BAC Information

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BAC

Clone NameB6Ng01-101G11
Chromosome3 (Build37)
Map Location 21,378,036 - 21,448,298
singlet/doubletdoublet
Overlap geneLOC100040325
Upstream geneEG665094
Downstream gene7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506, LOC675593
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101G11.bB6Ng01-101G11.g
ACCDH910597DH910598
length1,1151,160
definitionDH910597|Mus musculus domesticus DNA, BAC clone: B6Ng01-101G11, 5' end.DH910598|Mus musculus domesticus DNA, BAC clone: B6Ng01-101G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,447,171 - 21,448,298)(21,378,036 - 21,379,216)
sequence
gaattcattttcaaatattggtaacatcgcagagtgacactgatagtttg
cttttttttttttttctttcttggcctggggttatacattttccatcatt
gctctcaaagaaggatattagtacaagagacagtcattttgtgtgtcttg
aagtcctggccattgatggaagtcctttcacagaatacttccaggctact
ttccacagacagaaattgaatgagaaaagctgctggccacatgggcattg
gtttgtgctgtttagatctcaagcttagtaattaggatacattatgaaga
atttccacatatcactgtagcaatcagctgaatgagttcctgtgtatttt
gaatttatgatctggtcagtcttaagtgattaagaatgtgaacactggca
cacacccatgatcccagcactcagaagacagaagcatggaagatcaggag
cttaagatccttctcagctacattaggagttggagctagcttgggataga
tgagactctgtctcaaaaccaagaaagaaggcaaaagaataaggaaaaga
gaagagaaaagaaaagaaaaaaaatgctatttagagcaacaactaattga
cagtgtgttttctccacatctggatatacagtatatctccccttgagtat
tagattagctgtaccatattgtggcttcctttgtgacactttcacacatg
accatcaagtactttgtattcaaccctaataaccctcttttatgccctcc
atcttgcttcctctgctacatttttaaataagttccttattaccttcatg
cccatttaaacaattcttttctttttactccaaatttcaaatattagtga
aaatatatggcatctgtcttcctgaatctgatggatttgcttaaaataat
gatccatccattctgaggcaaattataaagaagattaggcatactctaat
cttccttatattggctatactcaactgtgtgtacatgcatgatttcttca
tttattcttctttagacatctagatattcattacttagttgtgtaataat
gctgcattaatgcaggtgttcatgtttcttggatgctttggtaatatcag
gagtaataatgtgaa
gaattcttccctactgtatcttcccaacatattcctgtttgtgttcattt
tccatcctgtttaaagctccctagtgttgaaccgggaggggtcaggaact
cactctatgaaaacacccattaaaatctctggctgctttcagaaagaaat
gtgtcaacacaggcaaaggaaagaaaacatgtgatagaaatctctttgga
ctgggcttggctcccacgtggacagaatttgccttcaccagttcccacac
actgtcccccacccccgggtctgctctgctccatctgggtctgccctgct
ctgcttctcagggtctgccaatgcagatggctgtaggaagcaggctgtta
gcactttgaaaggctatgtggcactttctgccttttaaaaaggtacaaga
agctcttgtgcagccttcagtgatgagaccggcttgtggtgtaattcagt
ttacttaagggaacaatttggagccctgaagagcaaagcccagttctggc
cccacagtgctgggtcatgtggcctcatgactttctttcagtgggagaca
ctagaggataaaactgaaatcagtaagaaaagctggcatcttttttagtt
tgttcctggtacatccattacctaatattttatttaaaagctcagtccct
gcactaaatgaacgggctaatctcaatttaggagttggcctgccctcaca
tgatgacagctaactgttaactgtctttaaaaaatagaggaaagaaaaaa
ttaaaaagaaacaaagaggaagagaagaagaaatggctaagggtaattta
agggttgtgtaaacttattaaggaacaattgtttcaaagacaaaggatag
ccttaagggctgggttggggattagttggtagaatacttgattagcatac
acaaatccctggattcttgtccacagcaccacacacagtgtggtggccaa
agtcagtagtcttcagaactcagcagtaaaggcaggaggagcagagttca
ggtacttaggaagttgagtcagacagtatacttcgaccttacattaaaac
aatcaataaaaaaattcttttcgatactgtccttacatcattggcagtgg
ccggctctagtagtactggaagccaatttgtccttgaggctaccagctgg
caacctcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_21447171_21448298
seq2: B6Ng01-101G11.b_45_1159 (reverse)

seq1  TTCACATTATTACTCCTGGATATTTACCCCAAAGCATCCAAG-AACATGA  49
      ||||||||||||||||| ||||||    |||||||||||||| |||||||
seq2  TTCACATTATTACTCCT-GATATT---ACCAAAGCATCCAAGAAACATGA  46

seq1  ACACCTGCATTTATTGCAGCATTATTTACAACAACTAAGTTATGGAATTA  99
      ||||||||| ||| |||||||||| |||| |||||||||| || ||||  
seq2  ACACCTGCA-TTAATGCAGCATTA-TTAC-ACAACTAAGTAAT-GAAT--  90

seq1  ATCTAGATGTCTAATAGAAGAATAAATGAAGAAATCATGCATGTACACAC  149
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATCTAGATGTCTAA-AGAAGAATAAATGAAGAAATCATGCATGTACACAC  139

seq1  AGTGGAGTATTAGCCAATTATAAGGAAGATTAGAGTTATGCCTAATCTTC  199
      ||| ||||| ||||||| ||||||||||||||||| ||||||||||||||
seq2  AGTTGAGTA-TAGCCAA-TATAAGGAAGATTAGAG-TATGCCTAATCTTC  186

seq1  TTTATAATTTGCCTCAGAATGGATGGATCATTATTTTAAGCAAATCCATC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATTTGCCTCAGAATGGATGGATCATTATTTTAAGCAAATCCATC  236

seq1  AGATTCAGGAAGACAGATGCCATATATTTTCACTAATATTTGAAATTTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAGGAAGACAGATGCCATATATTTTCACTAATATTTGAAATTTGG  286

seq1  AGTAAAAAGAAAAGAATTGTTTAAATGGGCATGAAGGTAATAAGGAACTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAGAAAAGAATTGTTTAAATGGGCATGAAGGTAATAAGGAACTT  336

seq1  ATTTAAAAATGTAGCAGAGGAAGCAAGATGGAGGGCATAAAAGAGGGTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAATGTAGCAGAGGAAGCAAGATGGAGGGCATAAAAGAGGGTTA  386

seq1  TTAGGGTTGAATACAAAGTACTTGATGGTCATGTGTGAAAGTGTCACAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTTGAATACAAAGTACTTGATGGTCATGTGTGAAAGTGTCACAAA  436

seq1  GGAAGCCACAATATGGTACAGCTAATCTAATACTCAAGGGGAGATATACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCACAATATGGTACAGCTAATCTAATACTCAAGGGGAGATATACT  486

seq1  GTATATCCAGATGTGGAGAAAACACACTGTCAATTAGTTGTTGCTCTAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCCAGATGTGGAGAAAACACACTGTCAATTAGTTGTTGCTCTAAA  536

seq1  TAGCATTTTTTTTCTTTTCTTTTCTCTTCTCTTTTCCTTATTCTTTTGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTTTTTTTCTTTTCTTTTCTCTTCTCTTTTCCTTATTCTTTTGCC  586

seq1  TTCTTTCTTGGTTTTGAGACAGAGTCTCATCTATCCCAAGCTAGCTCCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTGGTTTTGAGACAGAGTCTCATCTATCCCAAGCTAGCTCCAA  636

seq1  CTCCTAATGTAGCTGAGAAGGATCTTAAGCTCCTGATCTTCCATGCTTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAATGTAGCTGAGAAGGATCTTAAGCTCCTGATCTTCCATGCTTCT  686

seq1  GTCTTCTGAGTGCTGGGATCATGGGTGTGTGCCAGTGTTCACATTCTTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGAGTGCTGGGATCATGGGTGTGTGCCAGTGTTCACATTCTTAA  736

seq1  TCACTTAAGACTGACCAGATCATAAATTCAAAATACACAGGAACTCATTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAAGACTGACCAGATCATAAATTCAAAATACACAGGAACTCATTC  786

seq1  AGCTGATTGCTACAGTGATATGTGGAAATTCTTCATAATGTATCCTAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATTGCTACAGTGATATGTGGAAATTCTTCATAATGTATCCTAATT  836

seq1  ACTAAGCTTGAGATCTAAACAGCACAAACCAATGCCCATGTGGCCAGCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGCTTGAGATCTAAACAGCACAAACCAATGCCCATGTGGCCAGCAG  886

seq1  CTTTTCTCATTCAATTTCTGTCTGTGGAAAGTAGCCTGGAAGTATTCTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCATTCAATTTCTGTCTGTGGAAAGTAGCCTGGAAGTATTCTGT  936

seq1  GAAAGGACTTCCATCAATGGCCAGGACTTCAAGACACACAAAATGACTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGACTTCCATCAATGGCCAGGACTTCAAGACACACAAAATGACTGT  986

seq1  CTCTTGTACTAATATCCTTCTTTGAGAGCAATGATGGAAAATGTATAACC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTACTAATATCCTTCTTTGAGAGCAATGATGGAAAATGTATAACC  1036

seq1  CCAGGCCAAGAAAGAAAAAAAAAAAAAAGCAAACTATCAGTGTCACTCTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCAAGAAAGAAAAAAAAAAAAAAGCAAACTATCAGTGTCACTCTG  1086

seq1  CGATGTTACCAATATTTGAAAATGAATTC  1128
      |||||||||||||||||||||||||||||
seq2  CGATGTTACCAATATTTGAAAATGAATTC  1115

seq1: chr3_21378036_21379216
seq2: B6Ng01-101G11.g_67_1226

seq1  GAATTCTTCCCTACTGTATCTTCCCAACATATTCCTGTTTGTGTTCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCTACTGTATCTTCCCAACATATTCCTGTTTGTGTTCATTT  50

seq1  TCCATCCTGTTTAAAGCTCCCTAGTGTTGAACCGGGAGGGGTCAGGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCTGTTTAAAGCTCCCTAGTGTTGAACCGGGAGGGGTCAGGAACT  100

seq1  CACTCTATGAAAACACCCATTAAAATCTCTGGCTGCTTTCAGAAAGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTATGAAAACACCCATTAAAATCTCTGGCTGCTTTCAGAAAGAAAT  150

seq1  GTGTCAACACAGGCAAAGGAAAGAAAACATGTGATAGAAATCTCTTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAACACAGGCAAAGGAAAGAAAACATGTGATAGAAATCTCTTTGGA  200

seq1  CTGGGCTTGGCTCCCACGTGGACAGAATTTGCCTTCACCAGTTCCCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTTGGCTCCCACGTGGACAGAATTTGCCTTCACCAGTTCCCACAC  250

seq1  ACTGTCCCCCACCCCCGGGTCTGCTCTGCTCCATCTGGGTCTGCCCTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCCCCACCCCCGGGTCTGCTCTGCTCCATCTGGGTCTGCCCTGCT  300

seq1  CTGCTTCTCAGGGTCTGCCAATGCAGATGGCTGTAGGAAGCAGGCTGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTCAGGGTCTGCCAATGCAGATGGCTGTAGGAAGCAGGCTGTTA  350

seq1  GCACTTTGAAAGGCTATGTGGCACTTTCTGCCTTTTAAAAAGGTACAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTGAAAGGCTATGTGGCACTTTCTGCCTTTTAAAAAGGTACAAGA  400

seq1  AGCTCTTGTGCAGCCTTCAGTGATGAGACCGGCTTGTGGTGTAATTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTGTGCAGCCTTCAGTGATGAGACCGGCTTGTGGTGTAATTCAGT  450

seq1  TTACTTAAGGGAACAATTTGGAGCCCTGAAGAGCAAAGCCCAGTTCTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAAGGGAACAATTTGGAGCCCTGAAGAGCAAAGCCCAGTTCTGGC  500

seq1  CCCACAGTGCTGGGTCATGTGGCCTCATGACTTTCTTTCAGTGGGAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGTGCTGGGTCATGTGGCCTCATGACTTTCTTTCAGTGGGAGACA  550

seq1  CTAGAGGATAAAACTGAAATCAGTAAGAAAAGCTGGCATCTTTTTTAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGATAAAACTGAAATCAGTAAGAAAAGCTGGCATCTTTTTTAGTT  600

seq1  TGTTCCTGGTACATCCATTACCTAATATTTTATTTAAAAGCTCAGTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTGGTACATCCATTACCTAATATTTTATTTAAAAGCTCAGTCCCT  650

seq1  GCACTAAATGAACGGGCTAATCTCAATTTAGGAGTTGGCCTGCCCTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAAATGAACGGGCTAATCTCAATTTAGGAGTTGGCCTGCCCTCACA  700

seq1  TGATGACAGCTAACTGTTAACTGTCTTTAAAAAATAGAGGAAAGAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACAGCTAACTGTTAACTGTCTTTAAAAAATAGAGGAAAGAAAAAA  750

seq1  TTAAAAAGAAACAAAGAGGAAGAGAAGAAGAAATGGCTAAGGGTAATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGAAACAAAGAGGAAGAGAAGAAGAAATGGCTAAGGGTAATTTA  800

seq1  AGGGTTGTGTAAACTTATTAAAGGAACAATTGTTTCAAAGACAAAGGATA  850
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGGGTTGTGTAAACTTATT-AAGGAACAATTGTTTCAAAGACAAAGGATA  849

seq1  GCCTTAAGGGCTGGGTTGGGGATTAGTTGGTAGAATACTTGATTAGCATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAAGGGCTGGGTTGGGGATTAGTTGGTAGAATACTTGATTAGCATA  899

seq1  CACAAATCCCTGGATTC-TGTCCACAGCACCACACACAGTGTGGTGGCCA  949
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CACAAATCCCTGGATTCTTGTCCACAGCACCACACACAGTGTGGTGGCCA  949

seq1  AAGTCAGTAGTC-TCAGAACTCAGGCAGTAAAGGCAGGAGGAGCAGAAGT  998
      |||||||||||| |||||||||| |||||||||||||||||||||| |||
seq2  AAGTCAGTAGTCTTCAGAACTCA-GCAGTAAAGGCAGGAGGAGCAG-AGT  997

seq1  TCAAGGTTACATAGGAAGTTTGAGGTCAGACAGGTATACTTCAGACCCTA  1048
      |||  | ||| ||||||| |||| |||||||| ||||||||| |||| ||
seq2  TCA--GGTACTTAGGAAG-TTGA-GTCAGACA-GTATACTTC-GACCTTA  1041

seq1  ACCAATTAAAACAATCAAAATTAAAAAAAATTCTTTCAGATACTGTCCCT  1098
          ||||||||||||||     |||||||||||||  |||||||| |||
seq2  ---CATTAAAACAATCAA----TAAAAAAATTCTTTTCGATACTGT-CCT  1083

seq1  TACATTCATTTGGCAGTGG-CAGCTCTTAGTAGGTACTGGAAGCCAAAGT  1147
      |||| ||| |||||||||| | |||| ||||| |||||||||||| || |
seq2  TACA-TCA-TTGGCAGTGGCCGGCTC-TAGTA-GTACTGGAAGCC-AATT  1128

seq1  TGTCCTAGTAGGCTACACAGCT-GCAACACTCAGA  1181
      |||||| | ||||||| ||||| ||||| ||||||
seq2  TGTCCTTG-AGGCTAC-CAGCTGGCAAC-CTCAGA  1160