BAC Information

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BAC

Clone NameB6Ng01-101J04
Chromosome3 (Build37)
Map Location 41,103,943 - 41,258,696
singlet/doubletdoublet
Overlap geneEG666004
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream genePpia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101J04.bB6Ng01-101J04.g
ACCDH910715DH910716
length1,1601,103
definitionDH910715|Mus musculus domesticus DNA, BAC clone: B6Ng01-101J04, 5' end.DH910716|Mus musculus domesticus DNA, BAC clone: B6Ng01-101J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,257,518 - 41,258,696)(41,103,943 - 41,105,046)
sequence
gaattctcagtgtctccagaaagcttagacatggaatctctcctttacag
gtgtttggtgtcgtgtccccttgccttcttgtttgaccgtagagttggca
aaacaggttgaccaacatgactgcctgctataaatgtggtatgagacatt
tcttatcctccttctctccactgcatttcctcctcccctccccttcttca
cgtcctccattttcccctcccttcttctccttctccttttgtgtatgtga
gtatgcctgtgaggtatgtgtgtatgtatgcatatgtgcatatgcatgtg
agcccacaagttcacacaaggccagaggagaacatcaggtgccctgttcc
acccctcttctgtttctcttgaggaaggcccttctactgaatttagagct
gggctggttgccaacaagtccccgaaatcctccttctccaaccttctcag
cactggggtcacaagcatgagtggggccaagcctccgtctttacataggg
acgcgaagctcatgcttgcacagcaagggccctgtcttaagagtttcatt
gctgcgaagagacaccaggaccaaggcaactcccataaaggaaaacactt
ttttaatttaggctggcttacagcttcagaggtttactccattattgtca
gggtgggaagcatggcagtgtacaggtaaacaagatgctggaggagccag
aagttctacatctttatctgtaggaagcaggaggaacagacagccaggag
gaggctctcttccaaaagcagccaggaaaagactatattctacactgggt
gtagcttgagttatgtgagacttcaaaacccctagcccacaatggcacac
ctctttcagcaaggccatacctcctccaacaaggcacactcagacagaca
cactagtaagctggactacccccaaaggaaggtaatagatcttgaagcca
tttttcagagagggcatgcttctttcagcagagatgagccgtctgcaggg
gatctgatgatcagccatatggaaactgttcactattttgcgtgtttctg
atgttagacagtcactagccagattgaggtggctcagaatctgcaccata
ctaacccatatccttttgttgtcttaaccatatctgacaagactgtggaa
attatttttt
gaattcacacatctttgtctctcaggactgaggttaaagacacaagtcac
catgcttgactattgcatggggagatgagaactcagttccacacgttctt
tactcacagagatatctcctcaactcctcaagatgtattaagctttttta
tgttctaggtactaacataggccttgagggagacagaggctctgttctca
tgggggctatatcctagccagggaagataatgcataaatgagtagtacat
acacctgttgatagaaccaacagagactgactgggggttgactaagagag
ttacttaactgcaaacctggactctaaaggagctctccgaggaggtgaga
cactgacatctggaagtccacccactttcggggaaagagctttgcaagtg
agtggtctcacactctccatgagctcagtgaggcttgttggtggcagcag
tggggttggctaacgtcaacacttctgatcaccgctagctattctgtgcc
catcccccatccccatggacctggtctgattctgtgcccctcagtctccc
ctctgtcaccctctacccaagctattttgcatgtgagtattggaatcatt
gtgcttcagtggttggggtgtcacagactgatctttgagggtcacaaaca
tgtgcagcccttttgtctggggatttgactggaaatcaagtgtcaccgct
ctcactgtgcaccaaagaaacaccaagacagcggcctcaacctaacctaa
gcattcgggatgcactccctctattctggaagccagcagtctccctgcag
agcaacacttcatttctgggaaactctgtaggagaatttccctccctgcc
tcttccccaggtgtggaggagatgattgtgtttcttagctttcctcatct
ttcaaagacagcagggtaggtttggggcaatttcccttcgactctgagct
tcactctcatgtttcttgccttctgatggaatacatgtgtctgcctgact
actcgggacagggaaatcttcctttcatggccatctgactgagtctcaac
attagaatataaggtactacgaatgtttctctatgtcctaggaataggga
ttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41257518_41258696
seq2: B6Ng01-101J04.b_44_1203 (reverse)

seq1  AAAAAATAATTTTCCCCAACTCTTGTCAGATATGTGTTTAAGACATACTA  50
      ||||||||||||  ||  | ||||||||||||  || |||||||| || |
seq2  AAAAAATAATTT--CCACAGTCTTGTCAGATA--TGGTTAAGACA-AC-A  44

seq1  AAGGGATATGGGTTTGTATTGTTGCCAGATTCTGAGCCACATCAACTCTG  100
      || ||||||||||| |||| ||   ||||||||||||||| |||| ||||
seq2  AAAGGATATGGGTTAGTATGGT--GCAGATTCTGAGCCACCTCAA-TCTG  91

seq1  GCTCTGGTGACTGGTTCTAACATCTGGAACCACGCAAAAATAAGTGGACC  150
      |  || |||||||  |||||||||  ||| |||||||||   ||| || |
seq2  G--CTAGTGACTG--TCTAACATC-AGAAACACGCAAAA--TAGT-GAAC  133

seq1  AGTTTCCATATGGCTGATCATCAGATCCCCCTGCAGGCGGCTCATCTCTG  200
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  AGTTTCCATATGGCTGATCATCAGAT-CCCCTGCAGACGGCTCATCTCTG  182

seq1  CTGAAAGAAGCATGCCCTCTCTG-AAAATGGCTTCAAGATCTATTACCTT  249
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGAAAGAAGCATGCCCTCTCTGAAAAATGGCTTCAAGATCTATTACCTT  232

seq1  CCTTTGGGGGTAGTCCAGCTTACTAGTGTGTCTGTCTGAGTGTGGCCTTG  299
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCTTTGGGGGTAGTCCAGCTTACTAGTGTGTCTGTCTGAGTGT-GCCTTG  281

seq1  TTGGAGGAGGTATGGCCTTGCTGAAAGAGGTGTGCCATTGTGGGCTAGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGAGGTATGGCCTTGCTGAAAGAGGTGTGCCATTGTGGGCTAGGG  331

seq1  GTTTTGAAGTCTCACATAAACTCAAGCTACACCCAGTGTAGAATATAGTC  399
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTTTTGAAGTCTCACAT-AACTCAAGCTACACCCAGTGTAGAATATAGTC  380

seq1  TTTTCCTGGCTGCTTTTGGAAGAGAGCCTCCTCCTGGCTGTCTGTTCCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGGCTGCTTTTGGAAGAGAGCCTCCTCCTGGCTGTCTGTTCCTC  430

seq1  CTGCTTCCTACAGATAAAGATGTAGAACTTCTGGCTCCTCCAGCATCTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCTACAGATAAAGATGTAGAACTTCTGGCTCCTCCAGCATCTTG  480

seq1  TTTACCTGTACACTGCCATGCTTCCCACCCTGACAATAATGGAGTAAACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTGTACACTGCCATGCTTCCCACCCTGACAATAATGGAGTAAACC  530

seq1  TCTGAAGCTGTAAGCCAGCCTAAATTAAAAAAGTGTTTTCCTTTATGGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGCTGTAAGCCAGCCTAAATTAAAAAAGTGTTTTCCTTTATGGGA  580

seq1  GTTGCCTTGGTCCTGGTGTCTCTTCGCAGCAATGAAACTCTTAAGACAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTTGGTCCTGGTGTCTCTTCGCAGCAATGAAACTCTTAAGACAGG  630

seq1  GCCCTTGCTGTGCAAGCATGAGCTTCGCGTCCCTATGTAAAGACGGAGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGCTGTGCAAGCATGAGCTTCGCGTCCCTATGTAAAGACGGAGGC  680

seq1  TTGGCCCCACTCATGCTTGTGACCCCAGTGCTGAGAAGGTTGGAGAAGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCCCACTCATGCTTGTGACCCCAGTGCTGAGAAGGTTGGAGAAGGA  730

seq1  GGATTTCGGGGACTTGTTGGCAACCAGCCCAGCTCTAAATTCAGTAGAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCGGGGACTTGTTGGCAACCAGCCCAGCTCTAAATTCAGTAGAAG  780

seq1  GGCCTTCCTCAAGAGAAACAGAAGAGGGGTGGAACAGGGCACCTGATGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCCTCAAGAGAAACAGAAGAGGGGTGGAACAGGGCACCTGATGTT  830

seq1  CTCCTCTGGCCTTGTGTGAACTTGTGGGCTCACATGCATATGCACATATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTGGCCTTGTGTGAACTTGTGGGCTCACATGCATATGCACATATG  880

seq1  CATACATACACACATACCTCACAGGCATACTCACATACACAAAAGGAGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATACACACATACCTCACAGGCATACTCACATACACAAAAGGAGAA  930

seq1  GGAGAAGAAGGGAGGGGAAAATGGAGGACGTGAAGAAGGGGAGGGGAGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGAAGGGAGGGGAAAATGGAGGACGTGAAGAAGGGGAGGGGAGGA  980

seq1  GGAAATGCAGTGGAGAGAAGGAGGATAAGAAATGTCTCATACCACATTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGCAGTGGAGAGAAGGAGGATAAGAAATGTCTCATACCACATTTA  1030

seq1  TAGCAGGCAGTCATGTTGGTCAACCTGTTTTGCCAACTCTACGGTCAAAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGCAGTCATGTTGGTCAACCTGTTTTGCCAACTCTACGGTCAAAC  1080

seq1  AAGAAGGCAAGGGGACACGACACCAAACACCTGTAAAGGAGAGATTCCAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGCAAGGGGACACGACACCAAACACCTGTAAAGGAGAGATTCCAT  1130

seq1  GTCTAAGCTTTCTGGAGACACTGAGAATTC  1179
      ||||||||||||||||||||||||||||||
seq2  GTCTAAGCTTTCTGGAGACACTGAGAATTC  1160

seq1: chr3_41103943_41105046
seq2: B6Ng01-101J04.g_70_1172

seq1  GAATTCACACATCTTTGTCTCTCAGGACTGAGGTTAAAGACACAAGTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACATCTTTGTCTCTCAGGACTGAGGTTAAAGACACAAGTCAC  50

seq1  CATGCTTGACTATTGCATGGGGAGATGAGAACTCAGTTCCACACGTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTGACTATTGCATGGGGAGATGAGAACTCAGTTCCACACGTTCTT  100

seq1  TACTCACAGAGATATCTCCTCAACTCCTCAAGATGTATTAAGCTTTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACAGAGATATCTCCTCAACTCCTCAAGATGTATTAAGCTTTTTTA  150

seq1  TGTTCTAGGTACTAACATAGGCCTTGAGGGAGACAGAGGCTCTGTTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAGGTACTAACATAGGCCTTGAGGGAGACAGAGGCTCTGTTCTCA  200

seq1  TGGGGGCTATATCCTAGCCAGGGAAGATAATGCATAAATGAGTAGTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCTATATCCTAGCCAGGGAAGATAATGCATAAATGAGTAGTACAT  250

seq1  ACACCTGTTGATAGAACCAACAGAGACTGACTGGGGGTTGACTAAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGTTGATAGAACCAACAGAGACTGACTGGGGGTTGACTAAGAGAG  300

seq1  TTACTTAACTGCAAACCTGGACTCTAAAGGAGCTCTCCGAGGAGGTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAACTGCAAACCTGGACTCTAAAGGAGCTCTCCGAGGAGGTGAGA  350

seq1  CACTGACATCTGGAAGTCCACCCACTTTCGGGGAAAGAGCTTTGCAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACATCTGGAAGTCCACCCACTTTCGGGGAAAGAGCTTTGCAAGTG  400

seq1  AGTGGTCTCACACTCTCCATGAGCTCAGTGAGGCTTGTTGGTGGCAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCTCACACTCTCCATGAGCTCAGTGAGGCTTGTTGGTGGCAGCAG  450

seq1  TGGGGTTGGCTAACGTCAACACTTCTGATCACCGCTAGCTATTCTGTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTGGCTAACGTCAACACTTCTGATCACCGCTAGCTATTCTGTGCC  500

seq1  CATCCCCCATCCCCATGGACCTGGTCTGATTCTGTGCCCCTCAGTCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCCATCCCCATGGACCTGGTCTGATTCTGTGCCCCTCAGTCTCCC  550

seq1  CTCTGTCACCCTCTACCCAAGCTATTTTGCATGTGAGTATTGGAATCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCACCCTCTACCCAAGCTATTTTGCATGTGAGTATTGGAATCATT  600

seq1  GTGCTTCAGTGGTTGGGGTGTCACAGACTGATCTTTGAGGGTCACAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCAGTGGTTGGGGTGTCACAGACTGATCTTTGAGGGTCACAAACA  650

seq1  TGTGCAGCCC-TTTGTCTGGGGATTTGACTGGAAATCAAGTGTCACCGCT  699
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGCCCTTTTGTCTGGGGATTTGACTGGAAATCAAGTGTCACCGCT  700

seq1  CTCACTGTGCACCAAAGAAACACCAAGACAGCGGCCTCAACCTAACCTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGTGCACCAAAGAAACACCAAGACAGCGGCCTCAACCTAACCTAA  750

seq1  GCATTCGGGATGCACTCCCTCTATTCTGGAAGCCAGCAGTCTCCCTGCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCGGGATGCACTCCCTCTATTCTGGAAGCCAGCAGTCTCCCTGCAG  800

seq1  AGCAACAC-TCATTTCT-GGAAACTCTGTAGGAGAATTTCCCTCCCTGCC  847
      |||||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  AGCAACACTTCATTTCTGGGAAACTCTGTAGGAGAATTTCCCTCCCTGCC  850

seq1  TCTT-CCCAGGTGT-GAGGAGATGATTGTGTTTCTTAGC-TTCCTCATC-  893
      |||| ||||||||| |||||||||||||||||||||||| ||||||||| 
seq2  TCTTCCCCAGGTGTGGAGGAGATGATTGTGTTTCTTAGCTTTCCTCATCT  900

seq1  TTCAAAGACAGCAGGGTAGGTTT-GGGCAATTTCCCTTCGACTCTGAGCT  942
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCAAAGACAGCAGGGTAGGTTTGGGGCAATTTCCCTTCGACTCTGAGCT  950

seq1  TCACTCTCATGTTTCTTGCCTTCTGATGAATTACACTGTGTCTGCCTGAC  992
      |||||||||||||||||||||||||||| | |||| ||||||||||||||
seq2  TCACTCTCATGTTTCTTGCCTTCTGATGGAATACA-TGTGTCTGCCTGAC  999

seq1  TACTCGGGACAGGGAAATCTCCCATTTCATGGCCATCTGACTGATGTCCT  1042
      |||||||||||||||||||| || |||||||||||||||||||| || ||
seq2  TACTCGGGACAGGGAAATCTTCC-TTTCATGGCCATCTGACTGA-GT-CT  1046

seq1  CATACATTAGATATATAGTGTTACTACTGTATGTTTCTCTATGTCCTAGG  1092
      || |||||||| |||||  | |||||| | ||||||||||||||||||||
seq2  CA-ACATTAGA-ATATA-AGGTACTAC-GAATGTTTCTCTATGTCCTAGG  1092

seq1  AATTATGGATTG  1104
      || || ||||||
seq2  AA-TAGGGATTG  1103