BAC Information

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BAC

Clone NameB6Ng01-101L23
Chromosome3 (Build37)
Map Location 76,887,621 - 77,018,889
singlet/doubletdoublet
Overlap genenone
Upstream geneFstl5, LOC100041625, LOC100041635
Downstream geneDnmt3a-ps1, EG626461, LOC667526, LOC626479
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101L23.bB6Ng01-101L23.g
ACCDH910835DH910836
length1,1541,118
definitionDH910835|Mus musculus domesticus DNA, BAC clone: B6Ng01-101L23, 5' end.DH910836|Mus musculus domesticus DNA, BAC clone: B6Ng01-101L23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,017,713 - 77,018,889)(76,887,621 - 76,888,405)
sequence
gaattcctagatgaagttatgaacattggccctgacaacattttcatcat
tttttgttgttgttgttctgtatttgtattgtgcccttcatttttgcttg
caagtttttccctgaaccggaaatccagttttattgctgttaatgcatct
gtatttcattcactctcacttcttttacatcttccatgtagatatccgtg
aatttagcaaagaatggaaaccaaaaatgagcagtttgacatagccaaag
actcctgaaggacaatgaacaatttcaattttaaagactgtgaaaagaac
ataaatatatacagactaaacctaatacatttttcatcaactaaaaaaaa
aatcaatgaaaaatacagtttgtggtgcatgttgaattgactcaactaaa
atgtgattgctactgactagtttacagcaagtggttctggataagttctg
cactgcatggtgtggcataaatacactctgccatatgtcatgtttattgt
tatttttcaaataaaatgttattgcattactgccttctatgtgtgaatct
attaatttaattttaaaatgtaatgtactattcaattatctgataataaa
aaatagaagcaacaactaataaaaacataaaacatagctatatcatcaaa
ctagtgttctttatacttgttaacctgtatatttttaagagtttcatgtt
ggttatatggtggtatttacagcaaatgtgtactgctgaagatgtattta
tgcattgcataccataatgtttttaggtagtcagtctctacacttttcac
ttctaatgccaatgtcataggaatcaagaagtcagccatttcaacaaccc
acaaaaatcaaacctttcttccattccattgtttacaagacaaatatatg
aagatgatcatagagcctgatatatatgcatgtatatatttatgttaaat
aaatgtattaatgtcctacgcatagcaagtatatatgtgaaaatagcatt
aatataaatactttgtagatgatagcatatcattataatgtgaaacaaat
atacccataagtgaaatacaaacctcactcccaagtaccaatgtaaaaat
tcaggtggaaatgatccataaagcacaaaggtttactattctaccaagga
ctga
gaattcaaacatgtccttattatagatttaaatccaaataacaaagtcag
ttttactttctagaagcaagcagccatgtttggaagtgatttctaattga
ggggtaaagtgttaaattacagaaagattcgacaaaatgagctagagata
ggtaggatatgcccaactcatacaagaacgacacagaaaagagaagaaac
ttatgagagcagagtggggttgggggtcacatttttaataggaaagattt
acaggcactggttgaaggtaaagacagaatataccagagaaggtaaagag
ccagactattagaacaaattgccagagttagaggccaaagagagcaattc
agtcagaaaatgagagaacccagtttgaattgttcagcttggagagaaat
tcgggccagagcagctgaatttaaccagcctgtcagaattcagaaagatt
tagaaagagtgagtttattcttcagtaagtgtctgagatgacaattacac
ccaaggagtgaaaggtatttatacatctggattgaataagggagcttgga
agattagattgtatggggactagaaatgtccagggctaggtctagggata
gttagaacagagaaggaaacacactgagctgatcccaagccatgtattca
cacagcttgcagatggctttcatcacatcactttatcttaggaaataaaa
gttaattttagatcatttggtttataatatttgttaggtccaacattttt
ctgtttagttttattctggaatatcagcctatggctgagttaccaaatgc
cactgtttgagggcaaatacatcattttaagctgcagtagtctttctttc
ttaatctcatgcagtgagaattttggtttattaagaactccagttatgtt
atgtcatcatgcctttgttttaatctcagtgtgggatatcagctgcttca
gattgtccacattcactaactgtaatttttctcatgatctcagagagggt
gtgattttgcagctgaacagagtcatgtgggattcagagacttcttgaga
gtataaaattgagagctggaaggcttggcagcgttggctctgttatgctt
ccatactcctgcagctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_77017713_77018889
seq2: B6Ng01-101L23.b_48_1201 (reverse)

seq1  TCAGTCCTTTGGTTAAGAAATAAGTAAAACTTTGTTGCTATTTATTTGAT  50
      ||||||| |||||  ||||   |||||| ||||| |||  |||| | |||
seq2  TCAGTCC-TTGGT--AGAA--TAGTAAACCTTTG-TGC--TTTA-TGGAT  41

seq1  CATTTC--ACTGATATTTTTTACAATTGGTAATTTGGGAGTGAGGTTTTG  98
      ||||||   |||  | ||||||| |||||| | |||||||||||||||  
seq2  CATTTCCACCTG--AATTTTTAC-ATTGGT-ACTTGGGAGTGAGGTTT--  85

seq1  GTATTTCACTTATGGGTATAATTTGTTTCACA-TATAATTGATATGCTTA  147
      ||||||||||||||||||| |||||||||||| ||||| |||||||| ||
seq2  GTATTTCACTTATGGGTAT-ATTTGTTTCACATTATAA-TGATATGC-TA  132

seq1  TCATTCTACAAAGTATTTATATTAATGCTATTTTCAACATATATACTTTG  197
      ||| ||||||||||||||||||||||||||||||| |||||||||| |||
seq2  TCA-TCTACAAAGTATTTATATTAATGCTATTTTC-ACATATATAC-TTG  179

seq1  CTATGCGTAGGAACATTAATACATTTATTTAACATAAATATATAACATGC  247
      ||||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  CTATGCGTAGG-ACATTAATACATTTATTTAACATAAATATAT-ACATGC  227

seq1  ATATAATATCAGGCTCTATGATCATCTTCATATATTTTGTCTTGTAAACA  297
      |||| ||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATAT-ATATCAGGCTCTATGATCATCTTCATATA-TTTGTCTTGTAAACA  275

seq1  ATGGAATGGAAAGAAAGGTTTGATTTTTGTGGGTTGTTGAAATGGCTGAC  347
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATGG-AAGAAAGGTTTGATTTTTGTGGGTTGTTGAAATGGCTGAC  324

seq1  TTCTTGATTCCTATGACATTGGCATTAGAAGTGAAAAGTGTAGAGACTGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATTCCTATGACATTGGCATTAGAAGTGAAAAGTGTAGAGACTGA  374

seq1  CTACCTAAAAACATTATGGTATGCAATGCATAAATACATCTTCAGCAGTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTAAAAACATTATGGTATGCAATGCATAAATACATCTTCAGCAGTA  424

seq1  CACATTTGCTGTAAATACCACCATATAACCAACATGAAACTCTTAAAAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTGCTGTAAATACCACCATATAACCAACATGAAACTCTTAAAAAT  474

seq1  ATACAGGTTAACAAGTATAAAGAACACTAGTTTGATGATATAGCTATGTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGTTAACAAGTATAAAGAACACTAGTTTGATGATATAGCTATGTT  524

seq1  TTATGTTTTTATTAGTTGTTGCTTCTATTTTTTATTATCAGATAATTGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTTTATTAGTTGTTGCTTCTATTTTTTATTATCAGATAATTGAA  574

seq1  TAGTACATTACATTTTAAAATTAAATTAATAGATTCACACATAGAAGGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACATTACATTTTAAAATTAAATTAATAGATTCACACATAGAAGGCA  624

seq1  GTAATGCAATAACATTTTATTTGAAAAATAACAATAAACATGACATATGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGCAATAACATTTTATTTGAAAAATAACAATAAACATGACATATGG  674

seq1  CAGAGTGTATTTATGCCACACCATGCAGTGCAGAACTTATCCAGAACCAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGTATTTATGCCACACCATGCAGTGCAGAACTTATCCAGAACCAC  724

seq1  TTGCTGTAAACTAGTCAGTAGCAATCACATTTTAGTTGAGTCAATTCAAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTAAACTAGTCAGTAGCAATCACATTTTAGTTGAGTCAATTCAAC  774

seq1  ATGCACCACAAACTGTATTTTTCATTGATTTTTTTTTTAGTTGATGAAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCACAAACTGTATTTTTCATTGATTTTTTTTTTAGTTGATGAAAA  824

seq1  ATGTATTAGGTTTAGTCTGTATATATTTATGTTCTTTTCACAGTCTTTAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTAGGTTTAGTCTGTATATATTTATGTTCTTTTCACAGTCTTTAA  874

seq1  AATTGAAATTGTTCATTGTCCTTCAGGAGTCTTTGGCTATGTCAAACTGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAATTGTTCATTGTCCTTCAGGAGTCTTTGGCTATGTCAAACTGC  924

seq1  TCATTTTTGGTTTCCATTCTTTGCTAAATTCACGGATATCTACATGGAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTGGTTTCCATTCTTTGCTAAATTCACGGATATCTACATGGAAG  974

seq1  ATGTAAAAGAAGTGAGAGTGAATGAAATACAGATGCATTAACAGCAATAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAAGAAGTGAGAGTGAATGAAATACAGATGCATTAACAGCAATAA  1024

seq1  AACTGGATTTCCGGTTCAGGGAAAAACTTGCAAGCAAAAATGAAGGGCAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGATTTCCGGTTCAGGGAAAAACTTGCAAGCAAAAATGAAGGGCAC  1074

seq1  AATACAAATACAGAACAACAACAACAAAAAATGATGAAAATGTTGTCAGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAATACAGAACAACAACAACAAAAAATGATGAAAATGTTGTCAGG  1124

seq1  GCCAATGTTCATAACTTCATCTAGGAATTC  1177
      ||||||||||||||||||||||||||||||
seq2  GCCAATGTTCATAACTTCATCTAGGAATTC  1154

seq1: chr3_76887621_76888405
seq2: B6Ng01-101L23.g_421_1188

seq1  AGTCAGAAAATGAGAGAACCCAGTTTGAATTGTTCAGCTTGGAGAGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAAAATGAGAGAACCCAGTTTGAATTGTTCAGCTTGGAGAGAAAT  50

seq1  TCGGGCCAGAGCAGCTGAATTTAACCAGCCTGTCAGAATTCAGAAAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGCCAGAGCAGCTGAATTTAACCAGCCTGTCAGAATTCAGAAAGATT  100

seq1  TAGAAAGAGTGAGTTTATTCTTCAGTAAGTGTCTGAGATGACAATTACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGAGTGAGTTTATTCTTCAGTAAGTGTCTGAGATGACAATTACAC  150

seq1  CCAAGGAGTGAAAGGTATTTATACATCTGGATTGAATAAGGGAGCTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAGTGAAAGGTATTTATACATCTGGATTGAATAAGGGAGCTTGGA  200

seq1  AGATTAGATTGTATGGGGACTAGAAATGTCCAGGGCTAGGTCTAGGGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGATTGTATGGGGACTAGAAATGTCCAGGGCTAGGTCTAGGGATA  250

seq1  GTTAGAACAGAGAAGGAAACACACTGAGCTGATCCCAAGCCATGTATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAACAGAGAAGGAAACACACTGAGCTGATCCCAAGCCATGTATTCA  300

seq1  CACAGCTTGCAGATGGCTTTCATCACATCACTTTATCTTAGGAAATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTTGCAGATGGCTTTCATCACATCACTTTATCTTAGGAAATAAAA  350

seq1  GTTAATTTTAGATCATTTGGTTTATAATATTTGTTAGGTCCAACATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTTTAGATCATTTGGTTTATAATATTTGTTAGGTCCAACATTTTT  400

seq1  CTGTTTAGTTTTATTCTGGAATATCAGCCTATGGCTGAGTTACCAAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAGTTTTATTCTGGAATATCAGCCTATGGCTGAGTTACCAAATGC  450

seq1  CACTGTTTGAGGGCAAATACATCATTTTAAGCTGCAGTAGTCTTTCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTTGAGGGCAAATACATCATTTTAAGCTGCAGTAGTCTTTCTTTC  500

seq1  TTAATCTCATGCAGTGAGAATTTTGGTTTATTAAGAACTCCAGTTATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTCATGCAGTGAGAATTTTGGTTTATTAAGAACTCCAGTTATGTT  550

seq1  ATGTCATCATGCCTTTGTTTTAATCTCAGGTGTGGGATATCAGGCTGCTT  600
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  ATGTCATCATGCCTTTGTTTTAATCTCA-GTGTGGGATATCA-GCTGCTT  598

seq1  CAGATTGTCCACATTCACTAACTGTAATTTTTTCTCATGATCTCAGAGAG  650
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGATTGTCCACATTCACTAACTGTAA-TTTTTCTCATGATCTCAGAGAG  647

seq1  GGTGTGATTTTTGCCAGCTGAACAGAGTCAATGTTGGGGATTCAGAGAAC  700
      |||||||||||   ||||||||||||||| ||||  ||||||||||||  
seq2  GGTGTGATTTT--GCAGCTGAACAGAGTC-ATGT--GGGATTCAGAGACT  692

seq1  TCTTGAGAAGGTATAAATATGAGAGCCAGAGAGGGCTTGGGGCAGCGTTT  750
      ||||||||  |||||||  |||||||    || |||||  ||||||||| 
seq2  TCTTGAGA--GTATAAAATTGAGAGC--TGGAAGGCTT--GGCAGCGTTG  736

seq1  GCTCCCTGTAATGCTTCCCATACTCCTGCAGCTGT  785
      |||  |||| |||||| ||||||||||||||||||
seq2  GCT--CTGTTATGCTT-CCATACTCCTGCAGCTGT  768