BAC Information

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BAC

Clone NameB6Ng01-101N17
Chromosome3 (Build37)
Map Location 41,153,655 - 41,238,915
singlet/doubletdoublet
Overlap geneEG666004
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream genePpia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101N17.bB6Ng01-101N17.g
ACCDH910917DH910918
length978489
definitionDH910917|Mus musculus domesticus DNA, BAC clone: B6Ng01-101N17, 5' end.DH910918|Mus musculus domesticus DNA, BAC clone: B6Ng01-101N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,153,655 - 41,154,631)(41,238,421 - 41,238,915)
sequence
gaattcatcacagcactgtactgggtttctttccaaaaacctagatacat
tttatcaactgaaaagaaaaaaaaagttcaagattgtgctattcaacttt
gttatccaagatgaggaaagtggcttaaatatgttactaattattataaa
tccagtctgtgcttgtctttcataatcgagaagcgcaaggtctgtggagg
aggctgatgacaatggtctgttcacattctagaagcacgccttttccctc
catcgcataaaagtcgctgaataaagaaaatcacagatttatattatcct
gagcagctgagttatgattcagtaacaagtcagtcaaggctagggaaatg
gctgacagcctggtggtgtgattattatgaacaatggtggagtgtgagaa
acataaggaaaagacttggcctccagaagcatcgtgcatgtgcagcccca
cagctctgtgcagagggacttcagggcgtctcggccttcttcctcatctt
cagcccccaacaccttgcttccatccttttccaaatacaaccaggaagat
ggtaaaaccaaatacggatggacatgccaccatgtccagttttgttgcag
ttgtagttgttgctgttgggtgttttgtttttgtttgtttgattgattga
tttttggtttgtgtttttaaacacgggttttgggaatcaaagtcaggtct
tcatgcttaaaaggcaagcacttttactgagcaagctgtcacctccagct
gctcctcagaatgtcaaggtgattccagtagctcagggccctctgtccca
gatgataagtagatctgaagccaaggcttcccgtgccttcctgtggaaat
cttagccggcctaggaaataaacttggtaagtgtgtgggttagcagggga
agggatgagtttttattacaattttttttcttgtggggacttctcagaaa
gggaatgatgcagggggtgggggagggg
tcagtctccagagtggacaaatagtctctcttctttatatattaccagtc
tcaattattctgttggagcagcacaaaagcagagacggataggcagggta
tgcagcggatggggccccttgcaaggaaggccagacccttgggaaaccca
gagagtaggtccttggaaggtacaggtgactggaacattctgcgtgtggc
tgtgtatgtgtgtagctgtgtttgtgtttgtgtattagggaggaaggtaa
ggtagaatgtgtaaggtcactctgtttttgctgaagtcttccttcatggg
tgatctgccttggctagagccactgtcccaaaagaaatgactcccactac
aatgtagaagactctaggccctaaagtcaaaggtgtcttcctataaagtg
ccctgaatgactggggtttaaatcttaattagagattctttttctttctt
tcttttttaatatctattttttaggagacataaatatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41153655_41154631
seq2: B6Ng01-101N17.b_48_1025

seq1  GAATTCATCACAGCACTGTACTGGGTTTCTTTCCAAAAACCTAGATACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACAGCACTGTACTGGGTTTCTTTCCAAAAACCTAGATACAT  50

seq1  TTTATCAACTGAAAAGAAAAAAAAAGTTCAAGATTGTGCTATTCAACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAACTGAAAAGAAAAAAAAAGTTCAAGATTGTGCTATTCAACTTT  100

seq1  GTTATCCAAGATGAGGAAAGTGGCTTAAATATGTTACTAATTATTATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCAAGATGAGGAAAGTGGCTTAAATATGTTACTAATTATTATAAA  150

seq1  TCCAGTCTGTGCTTGTCTTTCATAATCGAGAAGCGCAAGGTCTGTGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCTGTGCTTGTCTTTCATAATCGAGAAGCGCAAGGTCTGTGGAGG  200

seq1  AGGCTGATGACAATGGTCTGTTCACATTCTAGAAGCACGCCTTTTCCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGATGACAATGGTCTGTTCACATTCTAGAAGCACGCCTTTTCCCTC  250

seq1  CATCGCATAAAAGTCGCTGAATAAAGAAAATCACAGATTTATATTATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGCATAAAAGTCGCTGAATAAAGAAAATCACAGATTTATATTATCCT  300

seq1  GAGCAGCTGAGTTATGATTCAGTAACAAGTCAGTCAAGGCTAGGGAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCTGAGTTATGATTCAGTAACAAGTCAGTCAAGGCTAGGGAAATG  350

seq1  GCTGACAGCCTGGTGGTGTGATTATTATGAACAATGGTGGAGTGTGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAGCCTGGTGGTGTGATTATTATGAACAATGGTGGAGTGTGAGAA  400

seq1  ACATAAGGAAAAGACTTGGCCTCCAGAAGCATCGTGCATGTGCAGCCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGGAAAAGACTTGGCCTCCAGAAGCATCGTGCATGTGCAGCCCCA  450

seq1  CAGCTCTGTGCAGAGGGACTTCAGGGCGTCTCGGCCTTCTTCCTCATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGTGCAGAGGGACTTCAGGGCGTCTCGGCCTTCTTCCTCATCTT  500

seq1  CAGCCCCCAACACCTTGCTTCCATCCTTTTCCAAATACAACCAGGAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCCAACACCTTGCTTCCATCCTTTTCCAAATACAACCAGGAAGAT  550

seq1  GGTAAAACCAAATACGGATGGACATGCCACCATGTCCAGTTTTGTTGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAACCAAATACGGATGGACATGCCACCATGTCCAGTTTTGTTGCAG  600

seq1  TTGTAGTTGTTGCTGTTGGGTGTTTTGTTTTTGTTTGTTTGATTGATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTTGTTGCTGTTGGGTGTTTTGTTTTTGTTTGTTTGATTGATTGA  650

seq1  TTTTTGGTTTGTGTTTTTAAACACGGGTTTTGGGAATCAAAGTCAGGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTTTGTGTTTTTAAACACGGGTTTTGGGAATCAAAGTCAGGTCT  700

seq1  TCATGCTTAAAAGGCAAGCAC-TTTACTGAGCAAGCTGTCACCTCCAGCT  749
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCATGCTTAAAAGGCAAGCACTTTTACTGAGCAAGCTGTCACCTCCAGCT  750

seq1  GCTCCTCAGAATGTCAAGGTGATTCCAGTAGCTCAGGGCCCTCTGTCCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCAGAATGTCAAGGTGATTCCAGTAGCTCAGGGCCCTCTGTCCCA  800

seq1  GATGATAAGTAGATCTGAAGCCAAGGCTTCCCGTGCC-TCCTGTGGAAAT  848
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GATGATAAGTAGATCTGAAGCCAAGGCTTCCCGTGCCTTCCTGTGGAAAT  850

seq1  CTTAGCCGGCCTAGGAAATAAACTT-GTAAGTGTGT-GGTTAGCAGGGGA  896
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  CTTAGCCGGCCTAGGAAATAAACTTGGTAAGTGTGTGGGTTAGCAGGGGA  900

seq1  AGGGATGAAGTTTTATTACAATTTTGTCTTCCTTGTGGGGACTTCTCAAG  946
      ||||||||  ||||||||||||||  | || |||||||||||||||| ||
seq2  AGGGATGAGTTTTTATTACAATTT--TTTTTCTTGTGGGGACTTCTC-AG  947

seq1  AAAGGGACAGATGCAGGGGGTGGGGGAGGGG  977
      |||||||  ||||||||||||||||||||||
seq2  AAAGGGAATGATGCAGGGGGTGGGGGAGGGG  978

seq1: chr3_41238421_41238915
seq2: B6Ng01-101N17.g_69_563 (reverse)

seq1  ACATATTTTTGTCTCCTAAAAAATAGATATTAAAAAAGAAAGAAAGAAAA  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTATGTCTCCTAAAAAATAGATATTAAAAAAGAAAGAAAGAAAA  50

seq1  AGAATCTCTAATTAAGATTTAAACCCCAGTCATTCAGGGCACTTTATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTCTAATTAAGATTTAAACCCCAGTCATTCAGGGCACTTTATAGG  100

seq1  AAGACACCTTTGACTTTAGGGCCTAGAGTCTTCTACATTGTAGTGGGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACCTTTGACTTTAGGGCCTAGAGTCTTCTACATTGTAGTGGGAGT  150

seq1  CATTTCTTTTGGGACAGTGGCTCTAGCCAAGGCAGATCACCCATGAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTTTGGGACAGTGGCTCTAGCCAAGGCAGATCACCCATGAAGGA  200

seq1  AGACTTCAGCAAAAACAGAGTGACCTTACACATTCTACCTTACCTTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCAGCAAAAACAGAGTGACCTTACACATTCTACCTTACCTTCCTC  250

seq1  CCTAATACACAAACACAAACACAGCTACACACATACACAGCCACACGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATACACAAACACAAACACAGCTACACACATACACAGCCACACGCAG  300

seq1  AATGTTCCAGTCACCTGTACCTTCCAAGGACCTACTCTCTGGGTTTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCCAGTCACCTGTACCTTCCAAGGACCTACTCTCTGGGTTTCCCA  350

seq1  AGGGTCTGGCCTTCCTTGCAAGGGGCCCCATCCGCTGCATACCCTGCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTGGCCTTCCTTGCAAGGGGCCCCATCCGCTGCATACCCTGCCTA  400

seq1  TCCGTCTCTGCTTTTGTGCTGCTCCAACAGAATAATTGAGACTGGTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCTCTGCTTTTGTGCTGCTCCAACAGAATAATTGAGACTGGTAATA  450

seq1  TATAAAGAAGAGAGACTATTTGTCCACTCTGGAGACTGAGAATTC  495
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGAAGAGAGACTATTTGTCCACTCTGGAGACTGAGAATTC  495