BAC Information

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BAC

Clone NameB6Ng01-101P05
Chromosome3 (Build37)
Map Location 11,036,273 - 11,037,389
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041480, Pmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16, LOC670564, LOC383826, EG667978
Downstream geneLOC667999
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101P05.bB6Ng01-101P05.g
ACCDH910981DH910982
length1,2651,099
definitionDH910981|Mus musculus domesticus DNA, BAC clone: B6Ng01-101P05, 5' end.DH910982|Mus musculus domesticus DNA, BAC clone: B6Ng01-101P05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagccattgttatcaaaaatgagaagattctgaaatttaataact
ttctgaaaaacattccagagttacagttacagcatttacaaccatttcct
attttgaatatgatgatgctaggaatgaaatctgatcgatccacccttta
tgtcttggcaaccatattatactgttaattcatcccaagctttggaaatt
cttcttactgataatactgttaaaatattaatattttataataaattatc
agcttctattccataatattaaattatcattttagatttaaacttactgt
tcaaagcagcatttttttcaatccctgctcaaaaacatcatatttgtcct
ttaggaggtttcttgcttttatatttaattatcatgttataaccattcag
agttttagtactgtcttagttagggtcttactgctgtgaacagacacaat
gaccaagataactcttttaagaacaacatttaattggggctagcttatag
gttcagaaattcggtcctttatcatcaaaggaggaacgtggcagtgttca
ggagaaaatgatgccggacagataagctgagaattctacatattcatctg
aaggttgctagtaaaatactggcttccagacagctaggatgagggtttta
aagcccacatccgcaatgacacacctattccaacatcaatctaatagtgc
ctctccctgggctgagcataaacaaaccatcacattccactccctggtcc
ccataggcttgtaacactctaaactcagattgatctactcctctgcctcc
aatggttctggtgatcatcccgtggtaccctacttaaacataccataatg
caaaatacatttagtctaacttcaaaagtccccatagtctacagcagtct
caaaatgctaaaagttcaaagttcaaatgtctctgagattcacccaatca
cttaactgtatccccaaagcagataggaaaaccagtggccaactcttcca
tctccatgtctgatgtaaagtgtatcagattcctaactccttttcatctg
ttgactgcacaactttttactttcctgggctggtttcattcctgttagcg
atttcttcacaatgctaatagccttgcactcaactcttggggttcaagca
gcttcgatttcagctctgtttctaggtctggatcccacatgatctctggt
ctcaggctgcatacttctagccttgcctgtgaactctagggcaagatgta
acatccccacggcat
gaattccgttgaggttaatagctgtgacgttaatgtactattattttgct
gaccaaattataataacccaccatgggggcaagcaaagtgagtccctagg
ccaaaggattacttagtgactatacaaaccaaccaatgcctaaaagggtt
actcgctacaccattgagaaccctattgctcaaatctgccccttacaaag
gtataaaaagtgtgttctttctttgtccttggtctttcctctggcctgcg
tgctagtgggggagtccccagcatgttggatcaataaaaatcctcattcg
ttttgcagcgatggtggcggtctctgtggtccttgtgagtaagggtcttt
tgacgaactccaacaccattacgaactaggtttcttgtgctcagtactag
aaattttgttagcctatggttgttgggagcacttttagtccaagtgtctt
aaatttctgtaagattttctctttttctgtctccctctcactgcatgcat
atatatacttacttatatgtattgtgtataatttaaggtaaatataaaat
aatatgattctttcattttcaagattggtagatggaggtatcgactagag
ttacttctcttcattaattgttttttagatttgcttacatatctaattca
tgcctcaaatatacctttacacattaactggtctttattagtaatttaaa
tatttcatttggattgttgagaagtaaaagaaaccagagtgtggggaatt
ccttttttaccacgtagtagtttggggactaagtcatttaagtcaaataa
tctccttataaaattataaaataaaagcaaaggattgtttctacttcagt
gtgaaactggagaaaattatgtctaaattaatttctattttttagaaaag
aataccatttgtgtggtctttctttaaaactgaataaatggactttgtat
tcttgttagcacacaggcctaaacatttcttgccaatttagcagttggga
tcttagcaaatgtggccacactgataatgattaatcttttgattccaata
aacttcgacatgtatgtaaatgcaaattctgtgggaagaacttgggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_11036273_11037389
seq2: B6Ng01-101P05.g_71_1169

seq1  GAATTCCGTTGAGGTTAATAGCTGTGACGTTAATGTACTATTATTTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTTGAGGTTAATAGCTGTGACGTTAATGTACTATTATTTTGCT  50

seq1  GACCAAATTATAATAACCCACCATGGGGGCAAGCAAAGTGAGTCCCTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAATTATAATAACCCACCATGGGGGCAAGCAAAGTGAGTCCCTAGG  100

seq1  CCAAAGGATTACTTAGTGACTATACAAACCAACCAATGCCTAAAAGGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGATTACTTAGTGACTATACAAACCAACCAATGCCTAAAAGGGTT  150

seq1  ACTCGCTACACCATTGAGAACCCTATTGCTCAAATCTGCCCCTTACAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGCTACACCATTGAGAACCCTATTGCTCAAATCTGCCCCTTACAAAG  200

seq1  GTATAAAAAGTGTGTTCTTTCTTTGTCCTTGGTCTTTCCTCTGGCCTGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAAAGTGTGTTCTTTCTTTGTCCTTGGTCTTTCCTCTGGCCTGCG  250

seq1  TGCTAGTGGGGGAGTCCCCAGCATGTTGGATCAATAAAAATCCTCATTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTGGGGGAGTCCCCAGCATGTTGGATCAATAAAAATCCTCATTCG  300

seq1  TTTTGCAGCGATGGTGGCGGTCTCTGTGGTCCTTGTGAGTAAGGGTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAGCGATGGTGGCGGTCTCTGTGGTCCTTGTGAGTAAGGGTCTTT  350

seq1  TGACGAACTCCAACACCATTACGAACTAGGTTTCTTGTGCTCAGTACTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGAACTCCAACACCATTACGAACTAGGTTTCTTGTGCTCAGTACTAG  400

seq1  AAATTTTGTTAGCCTATGGTTGTTGGGAGCACTTTTAGTCCAAGTGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTGTTAGCCTATGGTTGTTGGGAGCACTTTTAGTCCAAGTGTCTT  450

seq1  AAATTTCTGTAAGATTTTCTCTTTTTCTGTCTCCCTCTCACTGCATGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTGTAAGATTTTCTCTTTTTCTGTCTCCCTCTCACTGCATGCAT  500

seq1  ATATATACTTACTTATATGTATTGTGTATAATTTAAGGTAAATATAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACTTACTTATATGTATTGTGTATAATTTAAGGTAAATATAAAAT  550

seq1  AATATGATTC-TTCATTTTCAAGATTGGTAGATGGAGGTATCGACTAGAG  599
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AATATGATTCTTTCATTTTCAAGATTGGTAGATGGAGGTATCGACTAGAG  600

seq1  TTACTTCTCTTCATTAATTGTTTTTTAGATTTGCTTACATATCTAATTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCTCTTCATTAATTGTTTTTTAGATTTGCTTACATATCTAATTCA  650

seq1  TGCCTCAAATATACCTTTACACATTAACTGGTCTTTATTAGTAATTTAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAAATATACCTTTACACATTAACTGGTCTTTATTAGTAATTTAAA  700

seq1  TA-TTCATTTGGATTGTTGAGAAGTAAAAGAAACCAGAGTGTGGGGAATT  748
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATTTGGATTGTTGAGAAGTAAAAGAAACCAGAGTGTGGGGAATT  750

seq1  CCTTTTTTACCACGTAGTAGTTTGGGGACTAAGTCATTAAAGTCAAATAA  798
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCTTTTTTACCACGTAGTAGTTTGGGGACTAAGTCATTTAAGTCAAATAA  800

seq1  TCTCCTTATAAAATTAT-AAATAAAAGCAAA-GATTGTTTCTAC-TCAGA  845
      ||||||||||||||||| ||||||||||||| |||||||||||| |||| 
seq2  TCTCCTTATAAAATTATAAAATAAAAGCAAAGGATTGTTTCTACTTCAG-  849

seq1  TGTGAAACTGAGGAAAATTATGTCTAAATTAAAATTTCTATTTTTTAGAA  895
      ||||||||||  ||||||||||||||||||  |||||||||||||||| |
seq2  TGTGAAACTGGAGAAAATTATGTCTAAATT--AATTTCTATTTTTTAG-A  896

seq1  AAAGAATACCAATTGTGTGGTCTTTCTTTAAAAACTGAATAAATTGGACT  945
      ||||||||||| ||||||||||||||||| ||||||||||||| ||||||
seq2  AAAGAATACCATTTGTGTGGTCTTTCTTT-AAAACTGAATAAA-TGGACT  944

seq1  TTGTATTTCTGTTAGCACAACAGGCTAAAACAATTTCATTGCACAATTTA  995
      |||||||  ||||||||| ||||||  |||| ||||| |||| |||||||
seq2  TTGTATTCTTGTTAGCAC-ACAGGCCTAAAC-ATTTC-TTGC-CAATTTA  990

seq1  GCAGTTTGGGGAATCTAAGCAAAATGT-GCCACA-TGATTAATTGATTAA  1043
      ||||||   || |||| ||| |||||| |||||| ||||  | |||||||
seq2  GCAGTT---GGGATCTTAGC-AAATGTGGCCACACTGAT--AATGATTAA  1034

seq1  TCTTTTGATTTCAAATAAAACATTTGGACAAGTAATGTAGATGGCAGAAA  1093
      |||||||| ||| |||||   | || |||| || ||||| |||    |||
seq2  TCTTTTGA-TTCCAATAA---ACTTCGACATGT-ATGTAAATG---CAAA  1076

seq1  TTCTGTGGAGAGAACTTTGGGCTG  1117
      ||||||||  ||||| ||||||||
seq2  TTCTGTGGGAAGAAC-TTGGGCTG  1099