BAC Information

Click to search

BAC

Clone NameB6Ng01-102A03
Chromosome3 (Build37)
Map Location 57,188,998 - 57,352,465
singlet/doubletdoublet
Overlap geneTm4sf4, Wwtr1
Upstream geneLOC100040139, LOC666585, Tm4sf1, LOC383862
Downstream geneCommd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216, 4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102A03.bB6Ng01-102A03.g
ACCDH911023DH911024
length1,1191,048
definitionDH911023|Mus musculus domesticus DNA, BAC clone: B6Ng01-102A03, 5' end.DH911024|Mus musculus domesticus DNA, BAC clone: B6Ng01-102A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,188,998 - 57,190,123)(57,351,407 - 57,352,465)
sequence
gaattctggaatttttgtctccttagaaaaataaagaaatgtttaaagaa
tgtgcttttattttaatctcaggtataaggatgtgggctgcttcagattg
tctgcagcaactgactatgatttgcctcatgctctagcagaagcgggatt
ttgccagctgcagaccctcatttgctaaagtcttgattgccaggataagg
cgttctcaggaagtgagaaatggtgggacctttaggaggcaggcctagag
aaaacaagttaggatatcagggaatataccctcaaagggagctttggaaa
cctctctctctgcttctcagccaccctgaggtgactttaccacattctgc
ctgtgaggaaattctgtttcctcacaggcaatagtggtacactcagaact
ctctgaaacaaatgagacaaaacatttcctgctgtttttaacctcagtat
tatgttttagagccatgaagctgactaacacaattagggcaccacattct
tctctgttgtcaggatttagaattagtttgtaagaattagtttgcttggc
tcacattagcttgcactacatatagtcaacggtgtcacacacagcataat
ttctaaaattaccacaaatatattatggtaattgtgcttgttttttagat
gtgaagacccacctccctaaattttccacccctatagatatttctttggg
acagcacagaataaatgtgataagaagaccctacacctagtaaacaaaaa
actacacctgcaaaagaccccagcactttaatatatttgactctactgaa
cataccacttaaacttctcactaggaaaaagagcatcaaagacaattcag
tgtgaaattaaaaggtgacaccattgtcatctcaaagcaaaagtcagtca
gcttttacaggaaactcagtaaacaatttaagtctgtggggtgccatctt
tcagattgacagctgtgcctcctggtggcttcagacacaattttctcacg
ggtccttatttaaaaagtccttcttcctcaacaggtcattttatgcaaca
cattctatcagctaatccactgggataggttacatccagtcctgggaata
catactgacaatgcaaata
gaattctttaaagagcttcagatttctggtagtttatttgcttgtatctg
tttacctcagtcaccacaaggaaacagaatgtcccaaagggacagttcta
gatttgtgtgtgtgatccagaaatatattcttgcatgtttttttcttttt
ttttttgaattatttatttattttatgtatatgtgtacagtgtacactgc
atcagatcccattgcagatggttgtgagccaccatgtggttgctgggaat
taaactcaggacctctggaggatcagtcaatgcttttaaaccactgagcc
atctctccagccctgtttttttttttttttttgcaatggaaatattgtta
atggggactcatagatatctgaactgacatttgaggttttaaaacagaca
agaatcaaactcattcccattcctataaaaatgtcctgtcatgttcatag
ttaagattgattgtctgtcttaactatctctttcagttgtgtctgtctgt
ctgtctgtctctgtgtctgtgtgtctgtgtggtgtggtgtattttacaga
gcaaaggaatatgggtggagctgtaagatgcttgactctccagagagtca
taatgatctttggagcttaatttgtaggcacctgacccttcagaattgga
ggcagtccttctcttcttcatccagacctcagtgaagggaaggaatcctt
tccgtcagaccccaccttcatcttagtaggtgaattctgtagttgcttca
gcctaagggctgactgaccaaacaggtttcgagaaaattcagccctgctt
gcagccttcacactactaaccttgtgacctttgcatgttccacatgctga
gttccaactttatataataaaaagagactagtgctcagacccttctttat
gggatgtggcctagtgtagtggtaagtgtatggcttctggcctccatgtt
tggtttaatctgagtcctagtccatttccttatctcaaatggagatggta
gcatcctggaaacaaggccataaaggggttgagaaagcagtttatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_57188998_57190123
seq2: B6Ng01-102A03.b_45_1163

seq1  GAATTCTGGAATTTTTGTCTCCTTAGAAAAATAAAGAAATGTTTAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAATTTTTGTCTCCTTAGAAAAATAAAGAAATGTTTAAAGAA  50

seq1  TGTGCTTTTATTTTAATCTCAGGTATAAGGATGTGGGCTGCTTCAGATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTTATTTTAATCTCAGGTATAAGGATGTGGGCTGCTTCAGATTG  100

seq1  TCTGCAGCAACTGACTATGATTTGCCTCATGCTCTAGCAGAAGCGGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCAACTGACTATGATTTGCCTCATGCTCTAGCAGAAGCGGGATT  150

seq1  TTGCCAGCTGCAGACCCTCATTTGCTAAAGTCTTGATTGCCAGGATAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGCTGCAGACCCTCATTTGCTAAAGTCTTGATTGCCAGGATAAGG  200

seq1  CGTTCTCAGGAAGTGAGAAATGGTGGGACCTTTAGGAGGCAGGCCTAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTCAGGAAGTGAGAAATGGTGGGACCTTTAGGAGGCAGGCCTAGAG  250

seq1  AAAACAAGTTAGGATATCAGGGAATATACCCTCAAAGGGAGCTTTGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGTTAGGATATCAGGGAATATACCCTCAAAGGGAGCTTTGGAAA  300

seq1  CCTCTCTCTCTGCTTCTCAGCCACCCTGAGGTGACTTTACCACATTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCTCTGCTTCTCAGCCACCCTGAGGTGACTTTACCACATTCTGC  350

seq1  CTGTGAGGAAATTCTGTTTCCTCACAGGCAATAGTGGTACACTCAGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGGAAATTCTGTTTCCTCACAGGCAATAGTGGTACACTCAGAACT  400

seq1  CTCTGAAACAAATGAGACAAAACATTTCCTGCTGTTTTTAACCTCAGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAACAAATGAGACAAAACATTTCCTGCTGTTTTTAACCTCAGTAT  450

seq1  TATGTTTTAGAGCCATGAAGCTGACTAACACAATTAGGGCACCACATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTAGAGCCATGAAGCTGACTAACACAATTAGGGCACCACATTCT  500

seq1  TCTCTGTTGTCAGGATTTAGAATTAGTTTGTAAGAATTAGTTTGCTTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTGTCAGGATTTAGAATTAGTTTGTAAGAATTAGTTTGCTTGGC  550

seq1  TCACATTAGCTTGCACTACATATAGTCAACGGTGTCACACACAGCATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTAGCTTGCACTACATATAGTCAACGGTGTCACACACAGCATAAT  600

seq1  TTCTAAAATTACCACAAATATATTATGGTAATTGTGCTTGTTTTTTAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAATTACCACAAATATATTATGGTAATTGTGCTTGTTTTTTAGAT  650

seq1  GTGAAGACCCACCTCCCTAAATTTTCCACCCCTATAGATATTTCTTTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGACCCACCTCCCTAAATTTTCCACCCCTATAGATATTTCTTTGGG  700

seq1  ACAGCACAGAATAAATGTGATAAGAAGACCCTACACCTAGTAAACAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACAGAATAAATGTGATAAGAAGACCCTACACCTAGTAAACAAAAA  750

seq1  ACTACACCTGCAAAAGACCCCAGCACTTTAATATATTTGACTCTACTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACCTGCAAAAGACCCCAGCACTTTAATATATTTGACTCTACTGAA  800

seq1  CATACCACTTAAACTTCTCACTAGGAAAAAGAGCATCAAAGACAATTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCACTTAAACTTCTCACTAGGAAAAAGAGCATCAAAGACAATTCAG  850

seq1  TGTGAAATTAAAAGGTGACACCATTGTCATCTCAAAGCAAAAGGTCAGTC  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTGAAATTAAAAGGTGACACCATTGTCATCTCAAAGCAAAA-GTCAGTC  899

seq1  AGCTTTTACAGGAAACTCAGTAAACAATTTAAGTCTGT-GTGTGCCATCT  949
      |||||||||||||||||||||||||||||||||||||| | |||||||||
seq2  AGCTTTTACAGGAAACTCAGTAAACAATTTAAGTCTGTGGGGTGCCATCT  949

seq1  TTCAGAATTGACAGCTGTGCCTCCTGGT-GCTTCAGACAC-ATTTTCTCA  997
      ||||| |||||||||||||||||||||| ||||||||||| |||||||||
seq2  TTCAG-ATTGACAGCTGTGCCTCCTGGTGGCTTCAGACACAATTTTCTCA  998

seq1  CGGGTCCTTTATTAAAAAGTCCTTCTTCCTTCCAAACCAGGTTCATTTTA  1047
      |||||||||  |||||||||||||||||||  |||  |||| ||||||||
seq2  CGGGTCCTTATTTAAAAAGTCCTTCTTCCT--CAA--CAGG-TCATTTTA  1043

seq1  TGCAACACATTCTATCAGCTAATCCACT-GGATAGTTTTACATCCAGTCC  1096
      |||||||||||||||||||||||||||| ||||||  |||||||||||||
seq2  TGCAACACATTCTATCAGCTAATCCACTGGGATAG-GTTACATCCAGTCC  1092

seq1  TTGGGAATACATACATGACAAATGCAAATA  1126
       ||||||||||||| |||| ||||||||||
seq2  -TGGGAATACATAC-TGAC-AATGCAAATA  1119

seq1: chr3_57351407_57352465
seq2: B6Ng01-102A03.g_68_1115 (reverse)

seq1  AAGATAAACTGGCTCTCTCAACCACATTAATGGCCTAGTTTCCAAGATGC  50
      |||||||||| ||| |||||||| | || ||||||| ||||||| |||||
seq2  AAGATAAACT-GCTTTCTCAACC-CCTTTATGGCCTTGTTTCCAGGATGC  48

seq1  TTACCATCTCCATTTTGAGATAAGGAAATGAGACATAGGACTCAGAATTA  100
       ||||||||||| ||||||||||||||||| ||| |||||||||| ||||
seq2  -TACCATCTCCA-TTTGAGATAAGGAAATG-GAC-TAGGACTCAG-ATTA  93

seq1  AACCCAAACATTGTGAGGCCAGAAGCCATACACTTACCACTACACTAGGC  150
      || ||||||||   ||||||||||||||||||||||||||||||||||||
seq2  AA-CCAAACAT--GGAGGCCAGAAGCCATACACTTACCACTACACTAGGC  140

seq1  CACATCCCATAAAGAAGGGTCTGAGCACCTAGTCTCTTTTTATTATATAA  200
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CACATCCCATAAAGAAGGGTCTGAGCA-CTAGTCTCTTTTTATTATATAA  189

seq1  AGTTGGAACTCAGCATGTGGAACATGCAAAGGTCACAAGGTTAGTAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGAACTCAGCATGTGGAACATGCAAAGGTCACAAGGTTAGTAGTGT  239

seq1  GAAGGCTGCAAGCAGGGCTGAATTTTCTCGAAACCTGTTTGGTCAGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTGCAAGCAGGGCTGAATTTTCTCGAAACCTGTTTGGTCAGTCAG  289

seq1  CCCTTAGGCTGAAGCAACTACAGAATTCACCTACTAAGATGAAGGTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGGCTGAAGCAACTACAGAATTCACCTACTAAGATGAAGGTGGGG  339

seq1  TCTGACGGAAAGGATTCCTTCCCTTCACTGAGGTCTGGATGAAGAAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACGGAAAGGATTCCTTCCCTTCACTGAGGTCTGGATGAAGAAGAGA  389

seq1  AGGACTGCCTCCAATTCTGAAGGGTCAGGTGCCTACAAATTAAGCTCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGCCTCCAATTCTGAAGGGTCAGGTGCCTACAAATTAAGCTCCAA  439

seq1  AGATCATTATGACTCTCTGGAGAGTCAAGCATCTTACAGCTCCACCCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATTATGACTCTCTGGAGAGTCAAGCATCTTACAGCTCCACCCATA  489

seq1  TTCCTTTGCTCTGTAAAATACACCACACCACACAGACACACAGACACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGCTCTGTAAAATACACCACACCACACAGACACACAGACACAGA  539

seq1  GACAGACAGACAGACAGACACAACTGAAAGAGATAGTTAAGACAGACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAGACAGACAGACACAACTGAAAGAGATAGTTAAGACAGACAAT  589

seq1  CAATCTTAACTATGAACATGACAGGACATTTTTATAGGAATGGGAATGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTAACTATGAACATGACAGGACATTTTTATAGGAATGGGAATGAG  639

seq1  TTTGATTCTTGTCTGTTTTAAAACCTCAAATGTCAGTTCAGATATCTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTCTTGTCTGTTTTAAAACCTCAAATGTCAGTTCAGATATCTATG  689

seq1  AGTCCCCATTAACAATATTTCCATTGCAAAAAAAAAAAAAAAAACAGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCATTAACAATATTTCCATTGCAAAAAAAAAAAAAAAAACAGGGC  739

seq1  TGGAGAGATGGCTCAGTGGTTTAAAAGCATTGACTGATCCTCCAGAGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGATGGCTCAGTGGTTTAAAAGCATTGACTGATCCTCCAGAGGTC  789

seq1  CTGAGTTTAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGCAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGCAATG  839

seq1  GGATCTGATGCAGTGTACACTGTACACATATACATAAAATAAATAAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGATGCAGTGTACACTGTACACATATACATAAAATAAATAAATAA  889

seq1  TTCAAAAAAAAAAAGAAAAAAACATGCAAGAATATATTTCTGGATCACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAAAAAAAAGAAAAAAACATGCAAGAATATATTTCTGGATCACAC  939

seq1  ACACAAATCTAGAACTGTCCCTTTGGGACATTCTGTTTCCTTGTGGTGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATCTAGAACTGTCCCTTTGGGACATTCTGTTTCCTTGTGGTGAC  989

seq1  TGAGGTAAACAGATACAAGCAAATAAACTACCAGAAATCTGAAGCTCTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTAAACAGATACAAGCAAATAAACTACCAGAAATCTGAAGCTCTTT  1039

seq1  AAAGAATTC  1059
      |||||||||
seq2  AAAGAATTC  1048