BAC Information

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BAC

Clone NameB6Ng01-102C15
Chromosome3 (Build37)
Map Location 126,348,694 - 126,537,165
singlet/doubletdoublet
Overlap geneCamk2d
Upstream geneNdst4, Ugt8a, Arsj
Downstream geneAnk2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102C15.bB6Ng01-102C15.g
ACCDH911134DH911135
length9621,129
definitionDH911134|Mus musculus domesticus DNA, BAC clone: B6Ng01-102C15, 5' end.DH911135|Mus musculus domesticus DNA, BAC clone: B6Ng01-102C15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,348,694 - 126,349,566)(126,536,033 - 126,537,165)
sequence
gaattctctgaaggtatttctgctagtagataaagccaaagttcacatca
tatgtatctttaattagtgagatctgtatatttatgctcttattattttc
tgatttagacaaacattgttattattatttttttttagtcagaacttcta
accacaggaccatctctcaaggctctcccttttaatagtgtcatttgttt
gtttgtttgttctgatgtgtatgtgtttttaatcaagtgattgactgact
gatatctttacaaattaaattaaatttttttcaattaaatatgataacat
ttatttgaattcatcacttttttgtttacatctggatagcctttttcttt
tctttaaaaaaaaaaaccttttatttatttacttttacactccagatttt
ctgcaccctctgactgttgcacatcccatacctcttccctgccccctgtc
tccatgcggatgtcccccctcctacaccaccagacctctaaactccctgg
ggcctccagtctctcgagggttaggtgcatcttctcagattgaacccaga
cctgccagtcctctgctatatatgtgttggggacctcatatcagctgtgt
atgatgcctggttggtggtccagtgtttgagagatctcggggttccaggt
taattgagactgttgctcctcctacagggtcaccctcctcctcctcagct
tctttcagcttttccctaagtcgaccacaggggtcagcagcttctctcca
ttggttgggtataaatatctgcatctgattctttcagctgcttgttgggt
ctttcggagggcagtcatgataggtccctttttgtgagtactccatagcc
tcagtaatagtatcagccttgggacctacccttgagctggatcccacttt
gggcctgtcgctgggccttcttttcctcagctctctccatctcatccctg
taattctttcaa
gaattcaccctagctaccctcatcactctggctttgtgaatttttttttg
ttttgttttttattaacaaatgtgttactgaaaaatttaggttgtagaaa
gtaacagagaacaaacacctagctgcagagtaaagatggtcgacatcagg
tgtttactggcttcgtattccctgagtcaacctgcctggcccttccagaa
gggggacattaacaggatgatattaggccaccttattaagtaaatggtct
ttagtaaactctttaagttgcagcagaaatatatgaattggtgctacaaa
tgtgggcaataaacagatggcaacccccttgcaaaactattaaacccagc
aaacatcaaacataattagtgtcttttcctgtctaaaaattggtaaaatt
attaatggctggtctggttcagatatcacaccttaatcaactttctttcc
aactacacctgcttcaagttttctttcctcttcttaaatacctgaagttc
ctgcactgtccccttggtatccctgacaccttagaataaagcatgtggct
tgtttgactgctgtttaaactttgtacattgtgtcaaccgtgtcctccta
tttaaaaagaaagttctttgcaaacaaagaacatgctatttctttgtgtt
gcctaagaaatctttgttcaataaaatggacgttaaataattttttgagt
ttgatcagttgagacgatggataacgttttcttaatttcagaatgttggt
tgttttagtcatgaaatatgtctaaatattaatgttattagttttaaata
taaattatgtttaaatattaagttgactaggttttcagacagggggtcac
aaagttacttgcaattattctgtgcctcttgctcatcatgaagatgctaa
cctttgctttaattccttattgattgcaggaaccaatttgcatattttaa
atgatctgatcttctggatttaatgaaaacttaaagtgcatttacgtcaa
gaatcctgtttatcttaaatgaagtcatttcttataaaaataaattctgg
gaaaaataatttggactccataagactatctgacattacctcataccaaa
tttaatagtcaggctcctaaaggattatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_126348694_126349566
seq2: B6Ng01-102C15.b_44_915

seq1  GAATTCTCTGAAGGTATTTCTGCTAGTAGATAAAGCCAAAGTTCACATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAAGGTATTTCTGCTAGTAGATAAAGCCAAAGTTCACATCA  50

seq1  TATGTATCTTTAATTAGTGAGATCTGTATATTTATGCTCTTATTATTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATCTTTAATTAGTGAGATCTGTATATTTATGCTCTTATTATTTTC  100

seq1  TGATTTAGACAAACATTGTTATTATTATTTTTTTTTAGTCAGAACTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAGACAAACATTGTTATTATTATTTTTTTTTAGTCAGAACTTCTA  150

seq1  ACCACAGGACCATCTCTCAAGGCTCTCCCTTTTAATAGTGTCATTTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGGACCATCTCTCAAGGCTCTCCCTTTTAATAGTGTCATTTGTTT  200

seq1  GTTTGTTTGTTCTGATGTGTATGTGTTTTTAATCAAGTGATTGACTGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTCTGATGTGTATGTGTTTTTAATCAAGTGATTGACTGACT  250

seq1  GATATCTTTACAAATTAAATTAAATTTTTTTCAATTAAATATGATAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTTTACAAATTAAATTAAATTTTTTTCAATTAAATATGATAACAT  300

seq1  TTATTTGAATTCATCACTTTTTTGTTTACATCTGGATAGCCTTTTTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGAATTCATCACTTTTTTGTTTACATCTGGATAGCCTTTTTCTTT  350

seq1  TCTTTAAAAAAAAAAACCTTTTATTTATTTACTTTTACACTCCAGATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAAAAAAAAAACCTTTTATTTATTTACTTTTACACTCCAGATTTT  400

seq1  CTGCACCCTCTGACTGTTGCACATCCCATACCTCTTCCCTGCCCCCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCCTCTGACTGTTGCACATCCCATACCTCTTCCCTGCCCCCTGTC  450

seq1  TCCATGCGGATGTCCCCCCTCCTACACCACCAGACCTCTAAACTCCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCGGATGTCCCCCCTCCTACACCACCAGACCTCTAAACTCCCTGG  500

seq1  GGCCTCCAGTCTCTCGAGGGTTAGGTGCATCTTCTCAGATTGAACCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCAGTCTCTCGAGGGTTAGGTGCATCTTCTCAGATTGAACCCAGA  550

seq1  CCTGCCAGTCCTCTGCTATATATGTGTTGGGGACCTCATATCAGCTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAGTCCTCTGCTATATATGTGTTGGGGACCTCATATCAGCTGTGT  600

seq1  ATGATGCCTGGTTGGTGGTCCAGTGTTTGAGAGATCTCGGGGTTCCAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCCTGGTTGGTGGTCCAGTGTTTGAGAGATCTCGGGGTTCCAGGT  650

seq1  TAATTGAGACTGTTGCTCCTCCTACAGGGTCACCCTCCTCCTCCTCAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAGACTGTTGCTCCTCCTACAGGGTCACCCTCCTCCTCCTCAGCT  700

seq1  TCTTTCAGCTTTTCCCTAAGTCGACCACAGGGGTCAGCAGCTTCTCTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGCTTTTCCCTAAGTCGACCACAGGGGTCAGCAGCTTCTCTCCA  750

seq1  TTGGTTGGGTATAAATATCTGCATCTGATTCTTTCAGCTGCTTGTTGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGGGTATAAATATCTGCATCTGATTCTTTCAGCTGCTTGTTGGGT  800

seq1  CTTTCGGAGGGCAGTCATGATAGGTCCCTTTTTGTGAGTACTCCATAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCGGAGGGCAGTCATGATAGGTCCCTTTTTGTGAGTACTCCATAGCC  850

seq1  TCAGTAATAGTATCAGGCCTTGG  873
      ||||||||||||||| |||||||
seq2  TCAGTAATAGTATCA-GCCTTGG  872

seq1: chr3_126536033_126537165
seq2: B6Ng01-102C15.g_66_1194 (reverse)

seq1  AATAATCCTTTTATGAGGCCCCTGACTATTATATTTGGTATGAGGTAATG  50
      |||||||||||    |||  ||||||||||| ||||||||||||||||||
seq2  AATAATCCTTT----AGGAGCCTGACTATTAAATTTGGTATGAGGTAATG  46

seq1  TCAGATAGTCTTAATGGAGT-CAAATTATTTTT-CCAG-ATTTATTTTTT  97
      |||||||||||| ||||||| |||||||||||| |||| |||||||||| 
seq2  TCAGATAGTCTT-ATGGAGTCCAAATTATTTTTCCCAGAATTTATTTTT-  94

seq1  AATAAGAAATGACTTCATTT-AGATAAACAGGA-TCTTGAACGTAAATGC  145
       ||||||||||||||||||| |||||||||||| ||||| ||||||||||
seq2  -ATAAGAAATGACTTCATTTAAGATAAACAGGATTCTTG-ACGTAAATGC  142

seq1  AACTTTAAGTTTTCATTAAATCCAGAAGATCAGATCATTTAAAATATGCA  195
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ACTTTAAGTTTTCATTAAATCCAGAAGATCAGATCATTTAAAATATGCA  191

seq1  AATTGGTTCCTGCAATCAATAAGGAATTAAAGCAAAGGTTAGCATCTTCA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTTCCTGCAATCAATAAGGAATTAAAGCAAAGGTTAGCATCTTCA  241

seq1  TGATGAGCAAGAGGCACAGAATAATTGCAAGTAACTTTGTGACCCCCTGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGCAAGAGGCACAGAATAATTGCAAGTAACTTTGTGACCCCCTGT  291

seq1  CTGAAAACCTAGTCAACTTAATATTTAAACATAATTTATATTTAAAACTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAACCTAGTCAACTTAATATTTAAACATAATTTATATTTAAAACTA  341

seq1  ATAACATTAATATTTAGACATATTTCATGACTAAAACAACCAACATTCTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTAATATTTAGACATATTTCATGACTAAAACAACCAACATTCTG  391

seq1  AAATTAAGAAAACGTTATCCATCGTCTCAACTGATCAAACTCAAAAAATT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAGAAAACGTTATCCATCGTCTCAACTGATCAAACTCAAAAAATT  441

seq1  ATTTAACGTCCATTTTATTGAACAAAGATTTCTTAGGCAACACAAAGAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACGTCCATTTTATTGAACAAAGATTTCTTAGGCAACACAAAGAAA  491

seq1  TAGCATGTTCTTTGTTTGCAAAGAACTTTCTTTTTAAATAGGAGGACACG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGTTCTTTGTTTGCAAAGAACTTTCTTTTTAAATAGGAGGACACG  541

seq1  GTTGACACAATGTACAAAGTTTAAACAGCAGTCAAACAAGCCACATGCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACACAATGTACAAAGTTTAAACAGCAGTCAAACAAGCCACATGCTT  591

seq1  TATTCTAAGGTGTCAGGGATACCAAGGGGACAGTGCAGGAACTTCAGGTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAAGGTGTCAGGGATACCAAGGGGACAGTGCAGGAACTTCAGGTA  641

seq1  TTTAAGAAGAGGAAAGAAAACTTGAAGCAGGTGTAGTTGGAAAGAAAGTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAAGAGGAAAGAAAACTTGAAGCAGGTGTAGTTGGAAAGAAAGTT  691

seq1  GATTAAGGTGTGATATCTGAACCAGACCAGCCATTAATAATTTTACCAAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGGTGTGATATCTGAACCAGACCAGCCATTAATAATTTTACCAAT  741

seq1  TTTTAGACAGGAAAAGACACTAATTATGTTTGATGTTTGCTGGGTTTAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGACAGGAAAAGACACTAATTATGTTTGATGTTTGCTGGGTTTAAT  791

seq1  AGTTTTGCAAGGGGGTTGCCATCTGTTTATTGCCCACATTTGTAGCACCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGCAAGGGGGTTGCCATCTGTTTATTGCCCACATTTGTAGCACCA  841

seq1  ATTCATATATTTCTGCTGCAACTTAAAGAGTTTACTAAAGACCATTTACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATATATTTCTGCTGCAACTTAAAGAGTTTACTAAAGACCATTTACT  891

seq1  TAATAAGGTGGCCTAATATCATCCTGTTAATGTCCCCCTTCTGGAAGGGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGGTGGCCTAATATCATCCTGTTAATGTCCCCCTTCTGGAAGGGC  941

seq1  CAGGCAGGTTGACTCAGGGAATACGAAGCCAGTAAACACCTGATGTCGAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGGTTGACTCAGGGAATACGAAGCCAGTAAACACCTGATGTCGAC  991

seq1  CATCTTTACTCTGCAGCTAGGTGTTTGTTCTCTGTTACTTTCTACAACCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTACTCTGCAGCTAGGTGTTTGTTCTCTGTTACTTTCTACAACCT  1041

seq1  AAATTTTTCAGTAACACATTTGTTAATAAAAAACAAAACAAAAAAAAATT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTCAGTAACACATTTGTTAATAAAAAACAAAACAAAAAAAAATT  1091

seq1  CACAAAGCCAGAGTGATGAGGGTAGCTAGGGTGAATTC  1133
      ||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGCCAGAGTGATGAGGGTAGCTAGGGTGAATTC  1129