BAC Information

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BAC

Clone NameB6Ng01-102D07
Chromosome3 (Build37)
Map Location 63,560,014 - 63,561,226
singlet/doubletsinglet
Overlap genePlch1
Upstream geneLOC676984, LOC666967, Mme
Downstream geneLOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102D07.bB6Ng01-102D07.g
ACCDH911164DH911165
length1,2451,210
definitionDH911164|Mus musculus domesticus DNA, BAC clone: B6Ng01-102D07, 5' end.DH911165|Mus musculus domesticus DNA, BAC clone: B6Ng01-102D07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctcacttcaggctggaagaaaataatgcacgtaacaaagagaat
ctaactctcccaggtaataagctcaatttactttcctgtgagcagggaag
tgaagaaaagaaggcaggatgagttgggggaatctgaggcatctgtcctc
tcagtagggttgggtacccatttttgagattaaacactagggccccttat
gtatttgggagtaagttgaaaatcatcggttcattcattttatgcgtcaa
tgaatgtatgtgaggtttatatacatatgcatttatggagtgtaaaagta
acctttattcaccaaatgtaattgttatcttggaggcatactgatgaata
agctcacactttctagctctttgtgaactctggatggctggttcaactca
gctgttctgacccaaagtcttctccaagcttactgattcaatatggtttc
tcttggctcctgactgaattgttgtgcttgctctgaaactaactctggca
atatgttctagtcttctggcttcttctcattctctggctcattttgtctt
cacgtctgtctagtttgttctgtttacaacctgtctctgtaaaaactgtc
ctgttaaaactgttatacacatttttcttcctctttgctattaagtaccc
tctcttttctgtgctgttctcctgagaattatgctatcctatctctgact
cattctgtcaaatctttctctgattcatcacttggtctgtccctcaatta
gacatcactttcaaacttgggtgcttccttctacaaactaaccttatctt
cattgttagggattaaaggtgtgcactaagggtgtgtctgtattctagcc
agagggattaaatgtgtgttattccaaacagattacacagatctaaatgt
tctttggatatctctagcatatcttgctagaacaaccatgtcactgaatt
aaaatttgtctacagtggaagccagaggagacatgagggtcctgctctgt
tattcttcatcttatctcttgagaagagtcactcctaaacctgatcgagc
tgatagtcaacaagttcaggcttctctctgcttgttcttgctactgcatt
tctgggaacagcagtatggttctgcctgcgttacattggtctggatcaac
aggttcttatgctgcctaagacaagtcttttatcacgacttcaccctaga
ttgttggaccatatgtggaatacaagaactcttgtgtatagttcg
gaattcatttctttaaacagcaattataaagaatgagggcagccttggga
ctgtagctcaatggtagagcacttgcctaacattgaaaaatctgtgatcc
ctagaacccaaaaaggaaaaaaatgacacttttatttaaaaaaaaaaaaa
aacaactcagtagtctaacagtgatgttttaaaatactttaagaatactt
taagaataggggctggagagatggttcagcagttagaaacactcactgtt
cttccagaggtcctgagttcagttcccagcaaccacatggtggctcacag
ccatctgtaaagggatccaatgccctcttcttgtgtgtctgaagacagtt
agagtgtactcatataaataaaataaataaatatttaaaaaatactgatg
aataatgataagaaaagccaatctttcaaggaaatatgaaataataaata
ctaaaaacattgtatgtactgtatgttatagtatatccatccaagattcc
actgtcttttacattcaatgggttttagtaaaatctatgttttttttttc
tctattaaatcatctatttaataggacttaatacgaaaataaggttaagt
aaacagaactggaaatcccccaaggtactccagagacccagaaggctgtg
aacagctccttagcttgtctactatttagacttaacacacatatccattt
ctcataatcaaagaaccacactttttacaccatggaaagactgagttccc
tttgcagttattcaggtaggaggcctttgttctaaggaacactcaaataa
accatcaggagcccatgagatctacagcaaggtacacacaacaaaactca
gcatcattctagagaaaagttcacggtagataagcagagaaatcattacc
ttgagacacaaaccagaaataatttttagaaatcatacttaaaaaatatt
cgccataattaatgaaattattagcaaagacacacaaactaagacatttt
ctagaaattactttctatcatttacagagtgaagtactcgttaatgagag
ttgaagtcatgtgaattctactctcattctggctcaggcttctcatgtag
taacatccacagcatgaccaaatctcattctttaagcctctctttatgga
tgcaggcagatgttcgtatttgctaaatcagccagatattgatacaatca
tctttgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_63560014_63561226
seq2: B6Ng01-102D07.g_69_1278

seq1  GAATTCATTTCTTTAAACAGCAATTATAAAGAATGAGGGCAGCCTTGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCTTTAAACAGCAATTATAAAGAATGAGGGCAGCCTTGGGA  50

seq1  CTGTAGCTCAATGGTAGAGCACTTGCCTAACATTGAAAAATCTGTGATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCTCAATGGTAGAGCACTTGCCTAACATTGAAAAATCTGTGATCC  100

seq1  CTAGAACCCAAAAAGGAAAAAAATGACACTTTTATTTAAAAAAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACCCAAAAAGGAAAAAAATGACACTTTTATTTAAAAAAAAAAAAA  150

seq1  AACAACTCAGTAGTCTAACAGTGATGTTTTAAAATACTTTAAGAATACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTCAGTAGTCTAACAGTGATGTTTTAAAATACTTTAAGAATACTT  200

seq1  TAAGAATAGGGGCTGGAGAGATGGTTCAGCAGTTAGAAACACTCACTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATAGGGGCTGGAGAGATGGTTCAGCAGTTAGAAACACTCACTGTT  250

seq1  CTTCCAGAGGTCCTGAGTTCAGTTCCCAGCAACCACATGGTGGCTCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGAGGTCCTGAGTTCAGTTCCCAGCAACCACATGGTGGCTCACAG  300

seq1  CCATCTGTAAAGGGATCCAATGCCCTCTTCTTGTGTGTCTGAAGACAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGTAAAGGGATCCAATGCCCTCTTCTTGTGTGTCTGAAGACAGTT  350

seq1  AGAGTGTACTCATATAAATAAAATAAATAAATATTTAAAAAATACTGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTACTCATATAAATAAAATAAATAAATATTTAAAAAATACTGATG  400

seq1  AATAATGATAAGAAAAGCCAATCTTTCAAGGAAATATGAAATAATAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGATAAGAAAAGCCAATCTTTCAAGGAAATATGAAATAATAAATA  450

seq1  CTAAAAACATTGTATGTACTGTATGTTATAGTATATCCATCCAAGATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAACATTGTATGTACTGTATGTTATAGTATATCCATCCAAGATTCC  500

seq1  ACTGTCTTTTACATTCAATGGGTTTTAGTAAAATCTATGTTTTTTTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTTTTACATTCAATGGGTTTTAGTAAAATCTATGTTTTTTTTTTC  550

seq1  TCTATTAAATCATCTATTTAATAGGACTTAATACGAAAATAAGGTTAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAAATCATCTATTTAATAGGACTTAATACGAAAATAAGGTTAAGT  600

seq1  AAACAGAACTGGAAATCCCCCAAGGTACTCCAGAGACCCAGAAGGCTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAACTGGAAATCCCCCAAGGTACTCCAGAGACCCAGAAGGCTGTG  650

seq1  AACAGCTCCTTAGCTTGTCTACTATTTAGACTTAACACACATATCCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTCCTTAGCTTGTCTACTATTTAGACTTAACACACATATCCATTT  700

seq1  CTCATAATCAAAGAACCACACTTTTTACACCATGGAAAGACTGAGTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAATCAAAGAACCACACTTTTTACACCATGGAAAGACTGAGTTCCC  750

seq1  TTTGCAGTTATTCAGGTAGGAGGCCTTTGTTCTAAGGAACACTCAAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGTTATTCAGGTAGGAGGCCTTTGTTCTAAGGAACACTCAAATAA  800

seq1  ACCATCAGGAGCCCATGAGATCTACAGCAAGGTACACACAAC-AAACTCA  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACCATCAGGAGCCCATGAGATCTACAGCAAGGTACACACAACAAAACTCA  850

seq1  GCATCATTCTAGAGAAAAGTTCACGGTAGATAAGCAGAGAAATCATTACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATTCTAGAGAAAAGTTCACGGTAGATAAGCAGAGAAATCATTACC  900

seq1  TTGAGACACAAACCAGAAATAATTTTTAGAAATCATACTTAAAAAATATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACACAAACCAGAAATAATTTTTAGAAATCATACTTAAAAAATATT  950

seq1  CGCCAT-ATTAATGAAAATATTAGCAAAGACACCACAAAACTAAGACA-T  997
      |||||| |||||||||| |||||||||||||| ||| ||||||||||| |
seq2  CGCCATAATTAATGAAATTATTAGCAAAGACA-CAC-AAACTAAGACATT  998

seq1  TTCTAGAAATAACTTTCTATCAATTACAGAGTGAAGTACTCCGTTAATGA  1047
      |||||||||| ||||||||||| ||||||||||||||||| |||||||||
seq2  TTCTAGAAATTACTTTCTATCATTTACAGAGTGAAGTACT-CGTTAATGA  1047

seq1  GAGTTGAAGGTCATGTGAA-TCCACTCTCA-TCTGGCCCCAAGCCTTCTC  1095
      |||||||| |||||||||| || ||||||| |||||| |  || ||||||
seq2  GAGTTGAA-GTCATGTGAATTCTACTCTCATTCTGGCTC--AGGCTTCTC  1094

seq1  ATGTAAGTAACATCCCAACAGCATGACACAATCTCATTC-TTAAGCCTCT  1144
      |||| ||||||||||  ||||||||||  |||||||||| ||||||||||
seq2  ATGT-AGTAACATCC--ACAGCATGACCAAATCTCATTCTTTAAGCCTCT  1141

seq1  CTTTAT-GATGCCAGGCAGATGTACGTA-TTGCTATCAAAGCAGGATAGT  1192
      |||||| |||| ||||||||||| |||| ||||||    |||  |||| |
seq2  CTTTATGGATG-CAGGCAGATGTTCGTATTTGCTAAATCAGCCAGATATT  1190

seq1  GATTACAATCATCTTTGTTTT  1213
      || ||||||||||||||||||
seq2  GA-TACAATCATCTTTGTTTT  1210