BAC Information

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BAC

Clone NameB6Ng01-102D16
Chromosome3 (Build37)
Map Location 24,946,441 - 24,947,601
singlet/doubletsinglet
Overlap genenone
Upstream geneEG635702, EG665189
Downstream geneLOC100039592, Nlgn1, LOC621017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102D16.bB6Ng01-102D16.g
ACCDH911179DH911180
length1,1381,101
definitionDH911179|Mus musculus domesticus DNA, BAC clone: B6Ng01-102D16, 5' end.DH911180|Mus musculus domesticus DNA, BAC clone: B6Ng01-102D16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagaagtatcctcatgtgaagacatagcatgtacctaaaagtggc
atttatttgggctcattagcacacacttgtaatccctgacactgaagagg
tttgaggccaatccgagttacatattaagacttttttgacatcaaaacca
aataaaccattaagcccttgacattatatgtaaagcactacaaaagccat
tgtaagtcccaagttaaggaaagaaaataggtcattatacataatttttt
catttttattcatgtatggatctaggctcaaactgggacaatagtaactc
tgaaaataaattcaggccatcgctatgtggcagactgacgtcataggatt
aatgcagcttgttaacttactgctgtacaggacatctccatgtacaacct
cagtctatcccagtgagatcaaacatggcttctgactttgctcaaacctc
tcaggcttcttgtgcattgctgtccttgagaggcaaggataggccccact
gctgccctcctttcaattaagtccacagagagaaatcacttacccttctg
tatgaatgtgttttcacatggactggctttaacacatctggaaatattac
atacccatagttgggaaagactaattttattttacactcacacatgttct
gacaaaattaagacatagggactttctagcctcaagacaaagtattgtgt
ctactttaaaataagtaatacagtcacctaaggctttgagctgactacta
tccaacacatcactgagtgaaaaaattcacgttcatgtcagttattgctg
aacgtcttacagcaatgaaagtttcacagcactgcacctaaaaagttgac
aatattatttgttttcttttattaaaggactataaacaatataactgagt
gaggagtgaacagatactgacagaaacaggaatctggtaacaaaaatgcc
caccaagacaggagcacattcactacccagaaagtccctggcccctctgt
gtgtctttagcatatcctctggcaacacatttgtagatagtgttcaaaca
catacaatgcacaaacatctcgaatgtcattttctccttagcatgtgctt
ctctatcaatctggaatgttgcttcgagaattctattt
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
acccctgcatccctggaataaaacctacttggtcaggatggatgatttct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctatcttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtataagcttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttgat
taggattttgtccctttgccctctagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttgggttaatttcacccctgagtttgatta
cttccctgctgtctactcctcttgggtgaatttgcttccctttttttcta
gagcttttagatgtgttgtcaagctgctagtatgtgctcttctcccgttt
ctcttggagtattcagagctatgagtttcctctagaaatgctttcattgt
gtcccaaaggttgggtacgttggtggcctcatttcattaaactctaaaag
ctttatttccttccttattcctccttgacccaagggtatctatggagaaa
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_24946441_24947601
seq2: B6Ng01-102D16.b_46_1183

seq1  GAATTCAGAAGTATCCTCATGTGAAGACATAGCATGTACCTAAAAGTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGTATCCTCATGTGAAGACATAGCATGTACCTAAAAGTGGC  50

seq1  ATTTATTTGGGCTCATTAGCACACACTTGTAATCCCTGACACTGAAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTGGGCTCATTAGCACACACTTGTAATCCCTGACACTGAAGAGG  100

seq1  TTTGAGGCCAATCCGAGTTACATATTAAGACTTTTTTGACATCAAAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGCCAATCCGAGTTACATATTAAGACTTTTTTGACATCAAAACCA  150

seq1  AATAAACCATTAAGCCCTTGACATTATATGTAAAGCACTACAAAAGCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCATTAAGCCCTTGACATTATATGTAAAGCACTACAAAAGCCAT  200

seq1  TGTAAGTCCCAAGTTAAGGAAAGAAAATAGGTCATTATACATAATTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTCCCAAGTTAAGGAAAGAAAATAGGTCATTATACATAATTTTTT  250

seq1  CATTTTTATTCATGTATGGATCTAGGCTCAAACTGGGACAATAGTAACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTATTCATGTATGGATCTAGGCTCAAACTGGGACAATAGTAACTC  300

seq1  TGAAAATAAATTCAGGCCATCGCTATGTGGCAGACTGACGTCATAGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAAATTCAGGCCATCGCTATGTGGCAGACTGACGTCATAGGATT  350

seq1  AATGCAGCTTGTTAACTTACTGCTGTACAGGACATCTCCATGTACAACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGCTTGTTAACTTACTGCTGTACAGGACATCTCCATGTACAACCT  400

seq1  CAGTCTATCCCAGTGAGATCAAACATGGCTTCTGACTTTGCTCAAACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTATCCCAGTGAGATCAAACATGGCTTCTGACTTTGCTCAAACCTC  450

seq1  TCAGGCTTCTTGTGCATTGCTGTCCTTGAGAGGCAAGGATAGGCCCCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTTCTTGTGCATTGCTGTCCTTGAGAGGCAAGGATAGGCCCCACT  500

seq1  GCTGCCCTCCTTTCAATTAAGTCCACAGAGAGAAATCACTTACCCTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCTCCTTTCAATTAAGTCCACAGAGAGAAATCACTTACCCTTCTG  550

seq1  TATGAATGTGTTTTCACATGGACTGGCTTTAACACATCTGGAAATATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATGTGTTTTCACATGGACTGGCTTTAACACATCTGGAAATATTAC  600

seq1  ATACCCATAGTTGGGAAAGACTAATTTTATTTTACACTCACACATGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCATAGTTGGGAAAGACTAATTTTATTTTACACTCACACATGTTCT  650

seq1  GACAAAATTAAGACATAGGGACTTTCTAGCCTCAAGACAAAGTATTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAATTAAGACATAGGGACTTTCTAGCCTCAAGACAAAGTATTGTGT  700

seq1  CTACTTTAAAATAAGTAATACAGTCACCTAAGGCTTTGAGCTGACTACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTAAAATAAGTAATACAGTCACCTAAGGCTTTGAGCTGACTACTA  750

seq1  TCCAACACATCACTGAGTGAAAAAATTCACGTTCATGTCAGTTATTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACACATCACTGAGTGAAAAAATTCACGTTCATGTCAGTTATTGCTG  800

seq1  AACGTCTTACAGCAATGAAAGTTTCACAGCACTGCACCTAAAAAGTTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTCTTACAGCAATGAAAGTTTCACAGCACTGCACCTAAAAAGTTGAC  850

seq1  AATATTATTTGTTTTCTTTTATTAAAGGACTATAAACAATATAACTGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATTTGTTTTCTTTTATTAAAGGACTATAAACAATATAACTGAGT  900

seq1  GAGGAGTGAACAGATACTGACAGAAACAGGAATCTGGTAACAAAAATGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTGAACAGATACTGACAGAAACAGGAATCTGGTAACAAAAATGCC  950

seq1  CACCAAGACAGGAGCACATTCACTACCCAGAAAGTCCCCTGGCCCCCTCT  1000
      ||||||||||||||||||||||||||||||||||| |||||| |||||||
seq2  CACCAAGACAGGAGCACATTCACTACCCAGAAAGT-CCCTGG-CCCCTCT  998

seq1  GTGTGTCCTTTAGCATATTCCTCTTGGCAAACACATTTGTAGATAGTGTT  1050
      |||||| |||||||||| ||||| |||| ||||||||||||||||||| |
seq2  GTGTGT-CTTTAGCATA-TCCTC-TGGC-AACACATTTGTAGATAGTG-T  1043

seq1  TCAAAACCACATACAAATGCACAAACATTCTCGAATGTCCAATTTCTCTC  1100
      |||||  ||||||| |||||||||||| |||||||||||  |||| ||||
seq2  TCAAA--CACATAC-AATGCACAAACA-TCTCGAATGTC--ATTT-TCTC  1086

seq1  CTTTAGCCATGTGCTTCTCATATCAATCTTGGAGATGTTGCTTTTCAGAG  1150
      | |||| |||||||||||| |||||||| |||| |||||||||    |||
seq2  C-TTAG-CATGTGCTTCTC-TATCAATC-TGGA-ATGTTGCTT---CGAG  1128

seq1  TATTTCTATTT  1161
       | ||||||||
seq2  -AATTCTATTT  1138