BAC Information

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BAC

Clone NameB6Ng01-102E09
Chromosome3 (Build37)
Map Location 96,641,393 - 96,660,360
singlet/doubletdoublet
Overlap genePdzk1
Upstream genePrpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160
Downstream geneGpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9, Olfr1402, Chd1l, Fmo5, Prkab2, Pde4dip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102E09.bB6Ng01-102E09.g
ACCDH911211DH911212
length2741,094
definitionDH911211|Mus musculus domesticus DNA, BAC clone: B6Ng01-102E09, 5' end.DH911212|Mus musculus domesticus DNA, BAC clone: B6Ng01-102E09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,660,087 - 96,660,360)(96,641,393 - 96,642,500)
sequence
cactgggctaactctgtacaacctgctcgaccttacattcaaggccatta
tgtagatgatgtgaagccagacatggtagggatctttacaccacagaaat
cagcaaatgccccaaatgtgttatttctttcaggaaagagctaaattagt
ctcacacatctgtccagatactaaagtctgcctgactactctgcaatggc
aatggggactccagcatccagtcacctggggcaacctggacagctctccc
tcctcctcctcctcctcctccacc
gaattccaggcaatgtataaaaaaccagactttgtggcaaagcagacagg
gtaagcagatggctggagagccctagggaaggaagaagtgtgtgacgccg
atcccctgataccatgccccattcctgcagctccccatgatggctggttc
caacagtgacacttgtaatgctgcacttcctctgtccgatgccatctccg
catggagagagctgcagggactggttggacagatacacttgattgcttag
cattctgtagatcctctgcctgcccccttcattctggtgtccgtttctag
gccgagcaggccctcatcacctgacagatcgctgcaatcgcctcttccct
ggcctgccttcagcgtgtctgttctagtccagtacacccatccctcctga
gcccagctctgaacttactgttcctctgtgtgaacacgccagtggtctct
gtgcactgttcaatcacagccagaccttggtctggaaatgaaattctttc
atgtctgccgcccacagtcttcctttgatttgatttttatctctgcctta
agcatgcagaaaggactttcccattctgtgccctgatagccattccctgt
ctaaaacagtcactcgctgcctccgatgcaggtgaaatctcgcccatctg
ttatcaaagtcaacccctcactcgttaactcgttccttaatctgttccat
ggtgcagatcttacacacgtatgctctgttcgcagtggtggttcccaccc
cctctttttttaaattttgttttgctttgagtgtatgggttttttgcctg
tgtgtgtaactgtgtgtcacatgcatgcttggtgaacatgggacaccagg
ggagggtatcacatgcatgcttggtgaacatgggacaccggaagagggta
tcacgtgcatgcttggtgaacatgggacaccaggggagggtatcagattc
cttggaagtgagctacagcaattgtgaaccatcatgtggctctgaaactg
atccggtcctctggcagcatggcggtgatgctttactgctgagcacttct
caagtcatgggaagatctttcacctttccctgacttaattgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_96660087_96660360
seq2: B6Ng01-102E09.b_53_326 (reverse)

seq1  GGAGGAGGAGGAGGAGGAGGAGGAGGGAGAGCTGTCCAGGTTGCCCCAGG  50
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGGAGGAGGAGGAGGAGGAGGGAGAGCTGTCCAGGTTGCCCCAGG  50

seq1  TGACTGGATGCTGGAGTCCCCATTGCCATTGCAGAGTAGTCAGGCAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGATGCTGGAGTCCCCATTGCCATTGCAGAGTAGTCAGGCAGACT  100

seq1  TTAGTATCTGGACAGATGTGTGAGACTAATTTAGCTCTTTCCTGAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATCTGGACAGATGTGTGAGACTAATTTAGCTCTTTCCTGAAAGAA  150

seq1  ATAACACATTTGGGGCATTTGCTGATTTCTGTGGTGTAAAGATCCCTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACATTTGGGGCATTTGCTGATTTCTGTGGTGTAAAGATCCCTACC  200

seq1  ATGTCTGGCTTCACATCATCTACATAATGGCCTTGAATGTAAGGTCGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGGCTTCACATCATCTACATAATGGCCTTGAATGTAAGGTCGAGC  250

seq1  AGGTTGTACAGAGTTAGCCCAGTG  274
      ||||||||||||||||||||||||
seq2  AGGTTGTACAGAGTTAGCCCAGTG  274

seq1: chr3_96641393_96642500
seq2: B6Ng01-102E09.g_67_1160

seq1  GAATTCCAGGCAATGTATAAAAAACCAGACTTTGTGGCAAAGCAGACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCAATGTATAAAAAACCAGACTTTGTGGCAAAGCAGACAGG  50

seq1  GTAAGCAGATGGCTGGAGAGCCCTAGGGAAGGAAGAAGTGTGTGACGCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCAGATGGCTGGAGAGCCCTAGGGAAGGAAGAAGTGTGTGACGCCG  100

seq1  ATCCCCTGATACCATGCCCCATTCCTGCAGCTCCCCATGATGGCTGGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTGATACCATGCCCCATTCCTGCAGCTCCCCATGATGGCTGGTTC  150

seq1  CAACAGTGACACTTGTAATGCTGCACTTCCTCTGTCCGATGCCATCTCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTGACACTTGTAATGCTGCACTTCCTCTGTCCGATGCCATCTCCG  200

seq1  CATGGAGAGAGCTGCAGGGACTGGTTGGACAGATACACTTGATTGCTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGAGAGCTGCAGGGACTGGTTGGACAGATACACTTGATTGCTTAG  250

seq1  CATTCTGTAGATCCTCTGCCTGCCCCCTTCATTCTGGTGTCCGTTTCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGTAGATCCTCTGCCTGCCCCCTTCATTCTGGTGTCCGTTTCTAG  300

seq1  GCCGAGCAGGCCCTCATCACCTGACAGATCGCTGCAATCGCCTCTTCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAGCAGGCCCTCATCACCTGACAGATCGCTGCAATCGCCTCTTCCCT  350

seq1  GGCCTGCCTTCAGCGTGTCTGTTCTAGTCCAGTACACCCATCCCTCCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCCTTCAGCGTGTCTGTTCTAGTCCAGTACACCCATCCCTCCTGA  400

seq1  GCCCAGCTCTGAACTTACTGTTCCTCTGTGTGAACACGCCAGTGGTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCTCTGAACTTACTGTTCCTCTGTGTGAACACGCCAGTGGTCTCT  450

seq1  GTGCACTGTTCAATCACAGCCAGACCTTGGTCTGGAAATGAAATTCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTGTTCAATCACAGCCAGACCTTGGTCTGGAAATGAAATTCTTTC  500

seq1  ATGTCTGCCGCCCACAGTCTTCCTTTGATTTGATTTTTATCTCTGCCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGCCGCCCACAGTCTTCCTTTGATTTGATTTTTATCTCTGCCTTA  550

seq1  AGCATGCAGAAAGGACTTTCCCATTCTGTGCCCTGATAGCCATTCCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCAGAAAGGACTTTCCCATTCTGTGCCCTGATAGCCATTCCCTGT  600

seq1  CTAAAACAGTCACTCGCTGCCTCCGATGCAGGTGAAATCTCGCCCATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACAGTCACTCGCTGCCTCCGATGCAGGTGAAATCTCGCCCATCTG  650

seq1  TTATCAAAGTCAACCCCTCACTCGTTAACTCGTTCCTTAATCTGTTCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAAGTCAACCCCTCACTCGTTAACTCGTTCCTTAATCTGTTCCAT  700

seq1  GGTGCAGATCTTACACACGTATGCTCTGTTCGCAGTGGTGGTTCCCACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGATCTTACACACGTATGCTCTGTTCGCAGTGGTGGTTCCCACCC  750

seq1  CCTCTTTTTTTAAATTTTGTTTTGCTTTGAGTGTATGGGTTTTTTGCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTTTTTAAATTTTGTTTTGCTTTGAGTGTATGGGTTTTTTGCCTG  800

seq1  TGTGTGTAACTGTGTGTCACATGCATGCTTGGTGAACATGGGACACCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTAACTGTGTGTCACATGCATGCTTGGTGAACATGGGACACCAGG  850

seq1  GGAGGGTATCACATGCATGCTTGGTGAACATGGGACACCGGAAGAGGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTATCACATGCATGCTTGGTGAACATGGGACACCGGAAGAGGGTA  900

seq1  TCACGTGCATGCTTGGTGAACATGGGACACCAGGGGAGGGTATCAGATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTGCATGCTTGGTGAACATGGGACACCAGGGGAGGGTATCAGATTC  950

seq1  CTTGGAAGTGGAGCTACAGGCAATTGTGAACCATCATGTGGGCTCTGGAA  1000
      ||||||||| |||||||| |||||||||||||||||||| |||||| |||
seq2  CTTGGAAGT-GAGCTACA-GCAATTGTGAACCATCATGT-GGCTCT-GAA  996

seq1  ACTGAACCCGGCCCTCTGGCAGCATGGCCGGTGAGTGCTTTTAACTGCTG  1050
      |||| | |||| ||||||||||||||| |||||| ||||||  |||||||
seq2  ACTG-ATCCGGTCCTCTGGCAGCATGG-CGGTGA-TGCTTT--ACTGCTG  1041

seq1  AGCCACTTCTCCAGGTCATGGGGAAGATCTATCAACCCTTTCCCTGACCT  1100
      || ||||||| || ||||| |||||||||| |||  |||||||||||| |
seq2  AG-CACTTCT-CAAGTCAT-GGGAAGATCTTTCA--CCTTTCCCTGACTT  1086

seq1  AATTGACT  1108
      ||||||||
seq2  AATTGACT  1094