BAC Information

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BAC

Clone NameB6Ng01-103B05
Chromosome3 (Build37)
Map Location 80,404,872 - 80,531,629
singlet/doubletdoublet
Overlap geneGria2
Upstream genePpid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik, EG626797
Downstream geneGlrb, EG626841, Pdgfc, LOC229443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103B05.bB6Ng01-103B05.g
ACCDH911779DH911780
length1,1271,135
definitionDH911779|Mus musculus domesticus DNA, BAC clone: B6Ng01-103B05, 5' end.DH911780|Mus musculus domesticus DNA, BAC clone: B6Ng01-103B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,530,484 - 80,531,629)(80,404,872 - 80,406,016)
sequence
gaattcctttttgcaagctatgaagaccagtagattaatggaattaaatg
cattttttttaaccttagttactttcattttacagtgggttgatcactag
ttggcacctctgtacagtacaaggtcattcacctgcacctattttctatg
tcaatgacatagtaaagaaaatgtgccttaataatattcaaagacactaa
ctatagccattattagagtaatctctcattcaaagatgtaagcttatctt
gcctctgattcatgaagtaaaattagattcttggctactttgatgcctaa
agcaaaaagcattatttatctgaactattttttagctgcatcaaggataa
tattatattttctcattaatatcccctaatctttccataagctttatgcc
tgttatgtttttaatactgttgaattgtaattataacatgtcagaatttt
tatcaggtggttattttattaagacacaaatataggctgttagaaataaa
attattgcttgttatgaattaaatatagttgcttttatgtttccccctca
gaatgtgtggtatattttctgtactgaataaaaaaggggagttattttga
tttagtggttgacttcttaatagataacattattaatcactaaagtgaat
caatatattttcctgagaaatattctctgtatttgatacaaatgtttcat
tgaaaatgacttgtggaatataaaacttaaattttcatcttttgctaatt
agaccattgtagcataaattttgcaatgttgttcttcacatgtattaaat
gtttgtgttttatccttgctaggttattaccattggaaagcatgttaaag
ggtaccattatatcattgcaaatctggtaggtcaattaattgacattatt
tttatctattaatttttgttacgatatatttattgatatttcatgtgtat
gggtgtttggtctgcatgattatttgtgcactatctgcataaagtaccta
tgattgtagatgaggctatggtcatagactgaagtgacctatctggagca
tctgtcatactaatcccaaactgaactaatatagagcactccagtctcta
ctaccctttttttgttgttgttgcttt
gaattcctgtatgcatgtgccacagagtacatatgttaatatatgtggtc
agtcaacaccttccaccttgtttgagatggggtattattattgctgttct
gtgacatttactaagctagctggcctgcaagctcccagagcttctattgt
ctctgcctcccagtattcctgcctagggttacagacacctgtggtgtctg
gatgttgatgtattttagggattcaaactcaggtcctgtgtttttacaac
cattttacccactgatccatttctccagtccaggaaaatttatctttaaa
aattcatatcactacacttgggttatatcatttgttatagaaagacaaga
tttacataaatttagatgaaaatattttgaaagttttagaaaacaagttc
acttattgaaaagatggaagccttaccgatggacatctgttgttctaaag
tgaatcactcttaatatctaggaatgtagacttcttaggcacagggtgat
cagtttgttcattacttctttgttgcaggacacaaattgcagtaaaaata
ggatgtagcaagaattcagcggtacctacttgtatgacattcaatccatc
atggggagacatttgcctctaagtagggaaggatggatttaaaacttctg
acaagttaatagcaaacaactgaaatattagaaaatgcacttgtttataa
ctaaccccagagaagaaaatgaaaggattgcatttggaaaggtttagcaa
gcaattactttccagttacacaaacaaaagcaattgaattaatcagcttc
aagttggataatagaattcaccatattgccattagttgcctagtagcatg
aatatttaaataaatttcacttcattttatagaaaaaatctatagaaaat
gggggatgacagaaacttaactcagtagattatcaattccttctaattcc
taatttaaatggaaagatcaatgttatgtcattattactgttgatattgt
atcataagtatttacccattttatcagcacaacaataattaataacacca
gaagacctctgtcagagcctcagccatgaagaagatgcactcaggtaact
aaggattctgggtgaaggctgatgaccgctgctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_80530484_80531629
seq2: B6Ng01-103B05.b_49_1175 (reverse)

seq1  AAAGCAACAACAACAAAAAAGAGTAGGTAG-AGGGACTGGGAAGGTGGCT  49
      |||||||||||||||||||| ||  ||||| || ||||||  ||   |||
seq2  AAAGCAACAACAACAAAAAA-AG--GGTAGTAGAGACTGG--AG--TGCT  43

seq1  CTATATTTAAGTTCCAGGTTTGGGATTAAGTTATGACAGGATGGCTCCAG  99
      |||||||  |||||   |||||||||||   ||||||| ||| |||||||
seq2  CTATATT--AGTTC--AGTTTGGGATTA--GTATGACA-GAT-GCTCCAG  85

seq1  ATAGGTCACTTCAGTTCTAATGGACCATAGGCCCTCATCTACAATCATAG  149
      |||||||||||||| ||||   ||||||||  ||||||||||||||||||
seq2  ATAGGTCACTTCAG-TCTA--TGACCATAG--CCTCATCTACAATCATAG  130

seq1  GTACTTTATGCAGATAGTGCACAAATAATCATGCAGACCAAACACCCATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTATGCAGATAGTGCACAAATAATCATGCAGACCAAACACCCATA  180

seq1  CACATGAAATATCAATAAATATATCGTAACAAAAATTAATAGATAAAAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAAATATCAATAAATATATCGTAACAAAAATTAATAGATAAAAAT  230

seq1  AATGTCAATTAATTGACCTACCAGATTTGCAATGATATAATGGTACCCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAATTAATTGACCTACCAGATTTGCAATGATATAATGGTACCCTT  280

seq1  TAACATGCTTTCCAATGGTAATAACCTAGCAAGGATAAAACACAAACATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGCTTTCCAATGGTAATAACCTAGCAAGGATAAAACACAAACATT  330

seq1  TAATACATGTGAAGAACAACATTGCAAAATTTATGCTACAATGGTCTAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACATGTGAAGAACAACATTGCAAAATTTATGCTACAATGGTCTAAT  380

seq1  TAGCAAAAGATGAAAATTTAAGTTTTATATTCCACAAGTCATTTTCAATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAAGATGAAAATTTAAGTTTTATATTCCACAAGTCATTTTCAATG  430

seq1  AAACATTTGTATCAAATACAGAGAATATTTCTCAGGAAAATATATTGATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTGTATCAAATACAGAGAATATTTCTCAGGAAAATATATTGATT  480

seq1  CACTTTAGTGATTAATAATGTTATCTATTAAGAAGTCAACCACTAAATCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTAGTGATTAATAATGTTATCTATTAAGAAGTCAACCACTAAATCA  530

seq1  AAATAACTCCCCTTTTTTATTCAGTACAGAAAATATACCACACATTCTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTCCCCTTTTTTATTCAGTACAGAAAATATACCACACATTCTGA  580

seq1  GGGGGAAACATAAAAGCAACTATATTTAATTCATAACAAGCAATAATTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAACATAAAAGCAACTATATTTAATTCATAACAAGCAATAATTTT  630

seq1  ATTTCTAACAGCCTATATTTGTGTCTTAATAAAATAACCACCTGATAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAACAGCCTATATTTGTGTCTTAATAAAATAACCACCTGATAAAA  680

seq1  ATTCTGACATGTTATAATTACAATTCAACAGTATTAAAAACATAACAGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGACATGTTATAATTACAATTCAACAGTATTAAAAACATAACAGGC  730

seq1  ATAAAGCTTATGGAAAGATTAGGGGATATTAATGAGAAAATATAATATTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCTTATGGAAAGATTAGGGGATATTAATGAGAAAATATAATATTA  780

seq1  TCCTTGATGCAGCTAAAAAATAGTTCAGATAAATAATGCTTTTTGCTTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGATGCAGCTAAAAAATAGTTCAGATAAATAATGCTTTTTGCTTTA  830

seq1  GGCATCAAAGTAGCCAAGAATCTAATTTTACTTCATGAATCAGAGGCAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAAAGTAGCCAAGAATCTAATTTTACTTCATGAATCAGAGGCAAG  880

seq1  ATAAGCTTACATCTTTGAATGAGAGATTACTCTAATAATGGCTATAGTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTTACATCTTTGAATGAGAGATTACTCTAATAATGGCTATAGTTA  930

seq1  GTGTCTTTGAATATTATTAAGGCACATTTTCTTTACTATGTCATTGACAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTTGAATATTATTAAGGCACATTTTCTTTACTATGTCATTGACAT  980

seq1  AGAAAATAGGTGCAGGTGAATGACCTTGTACTGTACAGAGGTGCCAACTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAGGTGCAGGTGAATGACCTTGTACTGTACAGAGGTGCCAACTA  1030

seq1  GTGATCAACCCACTGTAAAATGAAAGTAACTAAGGTTAAAAAAAATGCAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCAACCCACTGTAAAATGAAAGTAACTAAGGTTAAAAAAAATGCAT  1080

seq1  TTAATTCCATTAATCTACTGGTCTTCATAGCTTGCAAAAAGGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCCATTAATCTACTGGTCTTCATAGCTTGCAAAAAGGAATTC  1127

seq1: chr3_80404872_80406016
seq2: B6Ng01-103B05.g_68_1202

seq1  GAATTCCTGTATGCATGTGCCACAGAGTACATATGTTAATATATGTGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTATGCATGTGCCACAGAGTACATATGTTAATATATGTGGTC  50

seq1  AGTCAACACCTTCCACCTTGTTTGAGATGGGGTATTATTATTGCTGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACACCTTCCACCTTGTTTGAGATGGGGTATTATTATTGCTGTTCT  100

seq1  GTGACATTTACTAAGCTAGCTGGCCTGCAAGCTCCCAGAGCTTCTATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATTTACTAAGCTAGCTGGCCTGCAAGCTCCCAGAGCTTCTATTGT  150

seq1  CTCTGCCTCCCAGTATTCCTGCCTAGGGTTACAGACACCTGTGGTGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCCAGTATTCCTGCCTAGGGTTACAGACACCTGTGGTGTCTG  200

seq1  GATGTTGATGTATTTTAGGGATTCAAACTCAGGTCCTGTGTTTTTACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGATGTATTTTAGGGATTCAAACTCAGGTCCTGTGTTTTTACAAC  250

seq1  CATTTTACCCACTGATCCATTTCTCCAGTCCAGGAAAATTTATCTTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTACCCACTGATCCATTTCTCCAGTCCAGGAAAATTTATCTTTAAA  300

seq1  AATTCATATCACTACACTTGGGTTATATCATTTGTTATAGAAAGACAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATATCACTACACTTGGGTTATATCATTTGTTATAGAAAGACAAGA  350

seq1  TTTACATAAATTTAGATGAAAATATTTTGAAAGTTTTAGAAAACAAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATAAATTTAGATGAAAATATTTTGAAAGTTTTAGAAAACAAGTTC  400

seq1  ACTTATTGAAAAGATGGAAGCCTTACCGATGGACATCTGTTGTTCTAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTGAAAAGATGGAAGCCTTACCGATGGACATCTGTTGTTCTAAAG  450

seq1  TGAATCACTCTTAATATCTAGGAATGTAGACTTCTTAGGCACAGGGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCACTCTTAATATCTAGGAATGTAGACTTCTTAGGCACAGGGTGAT  500

seq1  CAGTTTGTTCATTACTTCTTTGTTGCAGGACACAAATTGCAGTAAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTTCATTACTTCTTTGTTGCAGGACACAAATTGCAGTAAAAATA  550

seq1  GGATGTAGCAAGAATTCAGCGGTACCTACTTGTATGACATTCAATCCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTAGCAAGAATTCAGCGGTACCTACTTGTATGACATTCAATCCATC  600

seq1  ATGGGGAGACATTTGCCTCTAAGTAGGGAAGGATGGATTTAAAACTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGAGACATTTGCCTCTAAGTAGGGAAGGATGGATTTAAAACTTCTG  650

seq1  ACAAGTTAATAGCAAACAACTGAAATATTAGAAAATGCACTTGTTTATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTAATAGCAAACAACTGAAATATTAGAAAATGCACTTGTTTATAA  700

seq1  CTAACCCCAGAGAAGAAAATGAAAGGATTGCATTTGGAAAGGTTTAGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCCCAGAGAAGAAAATGAAAGGATTGCATTTGGAAAGGTTTAGCAA  750

seq1  GCAATTACTTTCCAGTTACACAAACAAAAGCAATTGAATTAATCAGCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTACTTTCCAGTTACACAAACAAAAGCAATTGAATTAATCAGCTTC  800

seq1  AAGTTGGATAATAGAATTCACCATATTGCCATTAGTTGCCTAGTAGCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGATAATAGAATTCACCATATTGCCATTAGTTGCCTAGTAGCATG  850

seq1  AATATTTAAATAAATTTTCACTTCATTTTATAGAAAAAAATCTATAGAAA  900
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  AATATTTAAATAAA-TTTCACTTCATTTTATAG-AAAAAATCTATAGAAA  898

seq1  ATGAGGGATGACAGAAACTTAACTCAGTAGATTATCAATTCCTTCTAATT  950
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGATGACAGAAACTTAACTCAGTAGATTATCAATTCCTTCTAATT  948

seq1  CCTAATTTTAAAATGGAAAGATCAATTGTTATGTCATTATTACTTGTTGA  1000
      ||||||||  ||||||||||||||| ||||||||||||||||| ||||||
seq2  CCTAATTT--AAATGGAAAGATCAA-TGTTATGTCATTATTAC-TGTTGA  994

seq1  TATTGTATCATAAGTATTTACCCAATTTTATCCAGCACAACAAATAAATA  1050
      ||||||||||||||||||||||| ||||||| ||||||||| ||||| ||
seq2  TATTGTATCATAAGTATTTACCC-ATTTTAT-CAGCACAAC-AATAATTA  1041

seq1  AATAAACACAAG-AGAACTCTGTCAGAG-CTCAGCCAATGAAGAAGATGC  1098
      |   ||||| || ||| ||||||||||| ||||||| |||||||||||||
seq2  A--TAACACCAGAAGACCTCTGTCAGAGCCTCAGCC-ATGAAGAAGATGC  1088

seq1  ACTTCAGGTAACTAAAGTATCT-GGTGAAGGCTGATGACAGCTGCTGC  1145
      || |||||||||||| |  ||| |||||||||||||||| ||||||||
seq2  AC-TCAGGTAACTAAGGATTCTGGGTGAAGGCTGATGACCGCTGCTGC  1135