BAC Information

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BAC

Clone NameB6Ng01-103D06
Chromosome3 (Build37)
Map Location 85,895,553 - 86,013,882
singlet/doubletdoublet
Overlap geneSh3d19, Rps3a, LOC634201
Upstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019
Downstream geneLrba, Mab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103D06.bB6Ng01-103D06.g
ACCDH911868DH911869
length3491,157
definitionDH911868|Mus musculus domesticus DNA, BAC clone: B6Ng01-103D06, 5' end.DH911869|Mus musculus domesticus DNA, BAC clone: B6Ng01-103D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,895,553 - 85,895,901)(86,012,714 - 86,013,882)
sequence
aatttcaggctccacattttttttccctcccaactcacccagcaaacatc
gttagccaaaaactataccagtaacgagcatagtagagatgccagaagca
gcaattacagcagaaattccacatgagaggctgactaccctgaacttgat
tagccttggttcttttaactagtccttttccagcaggaaacagatccctg
caagattctgaaaagtgggatgtaaccactgagggggttggtgaggtgaa
ggggggttggaaggcaaggccaggcttctgctgcctctagaggataagga
aggctggcggttctaggttccagcaggccatgggccagcttagaggcgg
gaattccatcccacctcgtgcaacatactcatcaccctaagacccttcac
gggacctcatcatctgctcctacacagaatgctcttgatttccatcccat
cctttgtccctttatcagtaattattctgacttcttttgtagtaagctga
gttctcaattatgtcctggtgacttttaatcagtgaaaatatttcaaggc
ctacatgggagctcatgaaaacaaaagcttggtcagcagtgtttcagatc
acattggcgaggtctggctggagagagagatggctcagcacttaagagta
ctgattcttcttctagagggcctggttaagttctcaccactcacaaggcc
aatatatatcacgtgaacatcttcctcaccttatcctgtccaccctccct
aaacaaacaacctattctatggcttgttagctgtctgctgtgatctcttt
ctactaggttcagtgtggcgtagaaaatgaaggtactttatttacctggc
cttcatttctgtttacagaatttctttggagcctttttgcaaagctccgt
tccatccactcccactgttgcacctgctgatccgattctaaccatcaacc
aatgagcaggaaggtctgaagccaatttctgatgggagaagtgggagggg
cactcatcaaactggtttgactaccccaagactgattaccctagttttaa
caagaaaaagaaaaaacttacaaaataacaggattctggacttcccaaat
ctcaaactggattttggagcactgaccaactatatgtttcacccctttaa
aatgtatgtattacactattgtagtgggagaggtgggtgccatgatattc
gtgtacttgcaaggggaaacttgcaagagtgagttctgtccctctactgt
gtatatccctgggatcacagttaggtcattagacctttgcatggccttta
gccatgagtcaactgattttgtctttatgttttgtttgagacaggttcgg
gctggccttgaacccacttatgtagcagagataccttaaacttctgagtt
tagattacaaggtgtggcaggaactgcttgtatcaagctgaagatcaatc
caagtctgaaggcaatcctaactagctctactgagtgagctacttgctag
cacaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_85895553_85895901
seq2: B6Ng01-103D06.b_53_401

seq1  AATTTCAGGCTCCACATTTTTTTTCCCTCCCAACTCACCCAGCAAACATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGGCTCCACATTTTTTTTCCCTCCCAACTCACCCAGCAAACATC  50

seq1  GTTAGCCAAAAACTATACCAGTAACGAGCATAGTAGAGATGCCAGAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCCAAAAACTATACCAGTAACGAGCATAGTAGAGATGCCAGAAGCA  100

seq1  GCAATTACAGCAGAAATTCCACATGAGAGGCTGACTACCCTGAACTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTACAGCAGAAATTCCACATGAGAGGCTGACTACCCTGAACTTGAT  150

seq1  TAGCCTTGGTTCTTTTAACTAGTCCTTTTCCAGCAGGAAACAGATCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTGGTTCTTTTAACTAGTCCTTTTCCAGCAGGAAACAGATCCCTG  200

seq1  CAAGATTCTGAAAAGTGGGATGTAACCACTGAGGGGGTTGGTGAGGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTCTGAAAAGTGGGATGTAACCACTGAGGGGGTTGGTGAGGTGAA  250

seq1  GGGGGGTTGGAAGGCAAGGCCAGGCTTCTGCTGCCTCTAGAGGATAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTTGGAAGGCAAGGCCAGGCTTCTGCTGCCTCTAGAGGATAAGGA  300

seq1  AGGCTGGCGGTTCTAGGTTCCAGCAGGCCAGGGGCCAGCACAGAGGCGG  349
      |||||||||||||||||||||||||||||| ||||||||  ||||||||
seq2  AGGCTGGCGGTTCTAGGTTCCAGCAGGCCATGGGCCAGCTTAGAGGCGG  349

seq1: chr3_86012714_86013882
seq2: B6Ng01-103D06.g_68_1224 (reverse)

seq1  GGGTGTGCTGGGGCAGTAGCTCACTCAGTAGAGTGCTAGTTTAGTATGCC  50
      |||||||||  |  ||||||||||||||||||  |||||||  |  ||||
seq2  GGGTGTGCT-AGCAAGTAGCTCACTCAGTAGA--GCTAGTTAGGATTGCC  47

seq1  -TCAGGCCCTGGGTTTGATCTTCAGCCTTGTACAAGCAGGTTTCCTTGCC  99
       ||||   || || |||||||||||| |  |||||||||  |||| ||||
seq2  TTCAG--ACTTGGATTGATCTTCAGCTTGATACAAGCAG--TTCC-TGCC  92

seq1  ACACC-TGTAATCCTAGACTCAGAAGTTTAAGGTTATCCTCTGCTACAT-  147
      ||||| |||||| ||| |||||||||||||||| ||| ||||||||||| 
seq2  ACACCTTGTAAT-CTAAACTCAGAAGTTTAAGG-TAT-CTCTGCTACATA  139

seq1  AGTGAGTTCAAGGCCAGCCCGAACCTGTCTCAAACAAAAACATAAAGACA  197
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGTGGGTTCAAGGCCAGCCCGAACCTGTCTCAAAC-AAAACATAAAGACA  188

seq1  AAATCAGTTGACTCATTGGCTAAAGGCCCATGCAAAGGTCTAATGACCTA  247
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  AAATCAGTTGACTCA-TGGCTAAAGG-CCATGCAAAGGTCTAATGACCTA  236

seq1  ACTGTGATCCCAGGGATATACACAGTAGAGGGACAGAACTCACTCTTGCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGATCCCAGGGATATACACAGTAGAGGGACAGAACTCACTCTTGCA  286

seq1  AGTTATCCCCTTGCAAGTACACGAATATCATGGCACCCACCTCTCCCACT  347
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTT-TCCCCTTGCAAGTACACGAATATCATGGCACCCACCTCTCCCACT  335

seq1  ACAATAGTGTAATACATACATTTTAAAGGGGTGAAACATATAGTTGGTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGTGTAATACATACATTTTAAAGGGGTGAAACATATAGTTGGTCA  385

seq1  GTGCTCCAAAATCCAGTTTGAGATTTGGGAAGTCCAGAATCCTGTTATTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCAAAATCCAGTTTGAGATTTGGGAAGTCCAGAATCCTGTTATTT  435

seq1  TGTAAGTTTTTTCTTTTTCTTGTTAAAACTAGGGTAATCAGTCTTGGGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTTTTTTCTTTTTCTTGTTAAAACTAGGGTAATCAGTCTTGGGGT  485

seq1  AGTCAAACCAGTTTGATGAGTGCCCCTCCCACTTCTCCCATCAGAAATTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAACCAGTTTGATGAGTGCCCCTCCCACTTCTCCCATCAGAAATTG  535

seq1  GCTTCAGACCTTCCTGCTCATTGGTTGATGGTTAGAATCGGATCAGCAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGACCTTCCTGCTCATTGGTTGATGGTTAGAATCGGATCAGCAGG  585

seq1  TGCAACAGTGGGAGTGGATGGAACGGAGCTTTGCAAAAAGGCTCCAAAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAGTGGGAGTGGATGGAACGGAGCTTTGCAAAAAGGCTCCAAAGA  635

seq1  AATTCTGTAAACAGAAATGAAGGCCAGGTAAATAAAGTACCTTCATTTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTAAACAGAAATGAAGGCCAGGTAAATAAAGTACCTTCATTTTC  685

seq1  TACGCCACACTGAACCTAGTAGAAAGAGATCACAGCAGACAGCTAACAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCCACACTGAACCTAGTAGAAAGAGATCACAGCAGACAGCTAACAAG  735

seq1  CCATAGAATAGGTTGTTTGTTTAGGGAGGGTGGACAGGATAAGGTGAGGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAATAGGTTGTTTGTTTAGGGAGGGTGGACAGGATAAGGTGAGGA  785

seq1  AGATGTTCACGTGATATATATTGGCCTTGTGAGTGGTGAGAACTTAACCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTCACGTGATATATATTGGCCTTGTGAGTGGTGAGAACTTAACCA  835

seq1  GGCCCTCTAGAAGAAGAATCAGTACTCTTAAGTGCTGAGCCATCTCTCTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCTAGAAGAAGAATCAGTACTCTTAAGTGCTGAGCCATCTCTCTC  885

seq1  TCCAGCCAGACCTCGCCAATGTGATCTGAAACACTGCTGACCAAGCTTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCAGACCTCGCCAATGTGATCTGAAACACTGCTGACCAAGCTTTT  935

seq1  GTTTTCATGAGCTCCCATGTAGGCCTTGAAATATTTTCACTGATTAAAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATGAGCTCCCATGTAGGCCTTGAAATATTTTCACTGATTAAAAG  985

seq1  TCACCAGGACATAATTGAGAACTCAGCTTACTACAAAAGAAGTCAGAATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGGACATAATTGAGAACTCAGCTTACTACAAAAGAAGTCAGAATA  1035

seq1  ATTACTGATAAAGGGACAAAGGATGGGATGGAAATCAAGAGCATTCTGTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGATAAAGGGACAAAGGATGGGATGGAAATCAAGAGCATTCTGTG  1085

seq1  TAGGAGCAGATGATGAGGTCCCGTGAAGGGTCTTAGGGTGATGAGTATGT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCAGATGATGAGGTCCCGTGAAGGGTCTTAGGGTGATGAGTATGT  1135

seq1  TGCACGAGGTGGGATGGAATTC  1169
      ||||||||||||||||||||||
seq2  TGCACGAGGTGGGATGGAATTC  1157