BAC Information

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BAC

Clone NameB6Ng01-103E04
Chromosome3 (Build37)
Map Location 22,209,627 - 22,343,584
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040325, 7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506
Downstream geneLOC675593, LOC100040378, LOC623751
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103E04.bB6Ng01-103E04.g
ACCDH911907DH911908
length1,0901,163
definitionDH911907|Mus musculus domesticus DNA, BAC clone: B6Ng01-103E04, 5' end.DH911908|Mus musculus domesticus DNA, BAC clone: B6Ng01-103E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,342,474 - 22,343,584)(22,209,627 - 22,210,812)
sequence
gaattcacttctggatcaagaagaaaaatgagttcagtgagaccagaaga
tgccacgtgcctctgctggccaattctcctagcccagctttgaagacagt
tgctgctatcaccaagagtagcactcctctactgatatggaccatatttt
actgatattgatgttgttttatttctcttttgtttcctcttctctttgga
agcagaaagtataaaagcaaaataaactcatttaagtgatttactctatg
agttttatatatctagtctttaatttacagtacaaaaaaatctaccaatg
gatccttacatatactcaagattcaatcatgatgacatacatctataatc
ccagaactcagacaggaagatgttcatgagtttgaaaccagcctgaactg
aataatgcagggtggattccaggaaaacctagagtggactttctcccaaa
aatgggagaggagcaatacaacagaaggggagcaatatccaaaaaacaaa
acccaggaaaggagctgcttgaggtaaactagagataggagacaatgtag
atgcctgtgaccaaaagaaatatctatggatgagcatgccatcatcatac
cacttatttgttcacatcactaatggatgctacattaattttaaaaagaa
agtataagttagcatcagagctgaaagcaatcactctcctgccgtgagga
tgctactagatattatctgattctctagtatccaggagatctcacaggcc
agactgacatgtttgtccttcactagaaaaggccacagaagccaaataag
agcaagaattgagggcagaagaaaagaacgaagaatgggggaggatagga
gaggagggcagaggagaggaaaggacagactggcacaagcaatgtaattt
gtcacaactgactgaagtcacacttactagtaatctgtttatatgctctc
tctcttcctgtctatcatacacgggaggggggggcagtgcacacaagcct
gacagactgtgtccctatagtacttaggagaaatcgacttggtcctaatc
agcacattcagaagaagaagcttgctctactttatcattc
gaattcaggtctgtgtaatttcaaggtaaacacttggttgatgagatatc
tcctcggacccccacattggttatgtgaagcaagcaatcgaggccatggt
taaattaaaacgtaggtgtgaacagaatttggaggttcatttattttctg
ctgttttaactgaattgttggaggctacaaggcccccaacactcctggtc
tgatagtccttcaccttgctctattggccgagagcgttacttgctttctg
cctgggctatctcctaaattccacagcagcaatgatcttatgttaagaac
cttaagtcattttgattgcattgttgacatcaaagagaaatcagaagata
tccttctggcatttgcaaaaaccactaaagatttgacttggtggtttgta
agtcacagtctggagcacactgtgctttttgtttcctatgtcaaatttgg
aatttcttacctcaagaagttgctgggaagaagttttattagttttgttt
tttgttgctattagaacattgacaaaagcaacttagggaagaaaggttta
tttttgctcacagttccaaagaggatacagctccatcatggctgtcatgg
agggcaaagtggggtaggaagactgtgagcctacattgcataggcagtca
ggaaacacagaaaaggaagtgaggttataaaatcttgaagctgcaatccc
ccaacatcctccctcgaacaaggctccacctcctaaaggttccccagcct
tccaaacagtgtgaccagctgggggccaggcgttcaaacatataaaccta
aggggcccatttcctattcaaaccaccacagaaatgaagaaagaaataag
tatcctggcttccatctgccacccagaattgttatattacacttctgcac
catttgttggatgcatttcttggtcactttgtttgtcctgtgcctatgta
cctggcatgtaacttagaataaaaaggcattgtatcagtgaaatttcatt
gtgaaatgaaactttttgttcatttctaagatgtactgcagagtatagga
aattcagactcctatgtgtgggattctcctagatcttactagatgtctgc
agctctgttctgtattcagtgatctatcaatgggttgttagaccagaatt
agtctaagggcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_22342474_22343584
seq2: B6Ng01-103E04.b_45_1134 (reverse)

seq1  GAATGATAAAGTAGGAGCAAGCTTCCTCTCTCCTGAATTGTGCTTGATTT  50
      ||||||||||||| |||||||||||   ||| ||||| ||||| ||| ||
seq2  GAATGATAAAGTA-GAGCAAGCTTC--TTCTTCTGAA-TGTGC-TGA-TT  44

seq1  AGGACAATGTCGATTTTCTCCCTAAGTGCTTAATAAGGGACACAGTTCTG  100
      ||||| | ||||| ||||| ||||||| ||  || |||||||||| ||||
seq2  AGGACCAAGTCGA-TTTCT-CCTAAGTACT--AT-AGGGACACAG-TCTG  88

seq1  TTCAGGCTTTGTGTGCACTGCCCCCCCCTCCCCGTGTATGATAGGACAGG  150
       |||||| ||||||||||||||||||||| ||||||||||||| |||| |
seq2  -TCAGGC-TTGTGTGCACTGCCCCCCCCT-CCCGTGTATGATA-GACA-G  133

seq1  GAAGAGAGAGAAACATATAAACAGATTACTAGTTAGTTGTGACTTTCAGT  200
      |||||||||| | |||||||||||||||||||| || |||||| ||||||
seq2  GAAGAGAGAG-AGCATATAAACAGATTACTAGTAAG-TGTGAC-TTCAGT  180

seq1  CAGTTGTGACAAATTACATTGCTTTGTGCCAGTCTGTCCTTTCCTCTCCT  250
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAGTTGTGACAAATTACATTGC-TTGTGCCAGTCTGTCCTTTCCTCTCCT  229

seq1  CTGCCCTCCTCTCCTATCCTCCCCCCTTCTTCGTTCTTTTCTTCTGCCCT  300
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGCCCTCCTCTCCTATCCTCCCCCATTCTTCGTTCTTTTCTTCTGCCCT  279

seq1  CAATTCTTGCTCTTATTTGGCTTCTGTGGCCTTTTCTAGTGAAGGACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTTGCTCTTATTTGGCTTCTGTGGCCTTTTCTAGTGAAGGACAAA  329

seq1  CATGTCAGTCTGGCCTGTGAGATCTCCTGGATACTAGAGAATCAGATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAGTCTGGCCTGTGAGATCTCCTGGATACTAGAGAATCAGATAAT  379

seq1  ATCTAGTAGCATCCTCACGGCAGGAGAGTGATTGCTTTCAGCTCTGATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTAGCATCCTCACGGCAGGAGAGTGATTGCTTTCAGCTCTGATGC  429

seq1  TAACTTATACTTTCTTTTTAAAATTAATGTAGCATCCATTAGTGATGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTATACTTTCTTTTTAAAATTAATGTAGCATCCATTAGTGATGTGA  479

seq1  ACAAATAAGTGGTATGATGATGGCATGCTCATCCATAGATATTTCTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAAGTGGTATGATGATGGCATGCTCATCCATAGATATTTCTTTTG  529

seq1  GTCACAGGCATCTACATTGTCTCCTATCTCTAGTTTACCTCAAGCAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGGCATCTACATTGTCTCCTATCTCTAGTTTACCTCAAGCAGCTC  579

seq1  CTTTCCTGGGTTTTGTTTTTTGGATATTGCTCCCCTTCTGTTGTATTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGGGTTTTGTTTTTTGGATATTGCTCCCCTTCTGTTGTATTGCT  629

seq1  CCTCTCCCATTTTTGGGAGAAAGTCCACTCTAGGTTTTCCTGGAATCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCATTTTTGGGAGAAAGTCCACTCTAGGTTTTCCTGGAATCCAC  679

seq1  CCTGCATTATTCAGTTCAGGCTGGTTTCAAACTCATGAACATCTTCCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATTATTCAGTTCAGGCTGGTTTCAAACTCATGAACATCTTCCTGT  729

seq1  CTGAGTTCTGGGATTATAGATGTATGTCATCATGATTGAATCTTGAGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCTGGGATTATAGATGTATGTCATCATGATTGAATCTTGAGTAT  779

seq1  ATGTAAGGATCCATTGGTAGATTTTTTTGTACTGTAAATTAAAGACTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGGATCCATTGGTAGATTTTTTTGTACTGTAAATTAAAGACTAGA  829

seq1  TATATAAAACTCATAGAGTAAATCACTTAAATGAGTTTATTTTGCTTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAACTCATAGAGTAAATCACTTAAATGAGTTTATTTTGCTTTTA  879

seq1  TACTTTCTGCTTCCAAAGAGAAGAGGAAACAAAAGAGAAATAAAACAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTGCTTCCAAAGAGAAGAGGAAACAAAAGAGAAATAAAACAACA  929

seq1  TCAATATCAGTAAAATATGGTCCATATCAGTAGAGGAGTGCTACTCTTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATCAGTAAAATATGGTCCATATCAGTAGAGGAGTGCTACTCTTGG  979

seq1  TGATAGCAGCAACTGTCTTCAAAGCTGGGCTAGGAGAATTGGCCAGCAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCAGCAACTGTCTTCAAAGCTGGGCTAGGAGAATTGGCCAGCAGA  1029

seq1  GGCACGTGGCATCTTCTGGTCTCACTGAACTCATTTTTCTTCTTGATCCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGTGGCATCTTCTGGTCTCACTGAACTCATTTTTCTTCTTGATCCA  1079

seq1  GAAGTGAATTC  1111
      |||||||||||
seq2  GAAGTGAATTC  1090

seq1: chr3_22209627_22210812
seq2: B6Ng01-103E04.g_67_1229

seq1  GAATTCAGGTCTGTGTAATTTCAAGGTAAACACTTGGTTGATGAGATATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCTGTGTAATTTCAAGGTAAACACTTGGTTGATGAGATATC  50

seq1  TCCTCGGACCCCCACATTGGTTATGTGAAGCAAGCAATCGAGGCCATGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCGGACCCCCACATTGGTTATGTGAAGCAAGCAATCGAGGCCATGGT  100

seq1  TAAATTAAAACGTAGGTGTGAACAGAATTTGGAGGTTCATTTATTTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAAAACGTAGGTGTGAACAGAATTTGGAGGTTCATTTATTTTCTG  150

seq1  CTGTTTTAACTGAATTGTTGGAGGCTACAAGGCCCCCAACACTCCTGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTAACTGAATTGTTGGAGGCTACAAGGCCCCCAACACTCCTGGTC  200

seq1  TGATAGTCCTTCACCTTGCTCTATTGGCCGAGAGCGTTACTTGCTTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTCCTTCACCTTGCTCTATTGGCCGAGAGCGTTACTTGCTTTCTG  250

seq1  CCTGGGCTATCTCCTAAATTCCACAGCAGCAATGATCTTATGTTAAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCTATCTCCTAAATTCCACAGCAGCAATGATCTTATGTTAAGAAC  300

seq1  CTTAAGTCATTTTGATTGCATTGTTGACATCAAAGAGAAATCAGAAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTCATTTTGATTGCATTGTTGACATCAAAGAGAAATCAGAAGATA  350

seq1  TCCTTCTGGCATTTGCAAAAACCACTAAAGATTTGACTTGGTGGTTTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGGCATTTGCAAAAACCACTAAAGATTTGACTTGGTGGTTTGTA  400

seq1  AGTCACAGTCTGGAGCACACTGTGCTTTTTGTTTCCTATGTCAAATTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGTCTGGAGCACACTGTGCTTTTTGTTTCCTATGTCAAATTTGG  450

seq1  AATTTCTTACCTCAAGAAGTTGCTGGGAAGAAGTTTTATTAGTTTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTACCTCAAGAAGTTGCTGGGAAGAAGTTTTATTAGTTTTGTTT  500

seq1  TTTGTTGCTATTAGAACATTGACAAAAGCAACTTAGGGAAGAAAGGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGCTATTAGAACATTGACAAAAGCAACTTAGGGAAGAAAGGTTTA  550

seq1  TTTTTGCTCACAGTTCCAAAGAGGATACAGCTCCATCATGGCTGTCATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTCACAGTTCCAAAGAGGATACAGCTCCATCATGGCTGTCATGG  600

seq1  AGGGCAAAGTGGGGTAGGAAGACTGTGAGCCTACATTGCATAGGCAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAAAGTGGGGTAGGAAGACTGTGAGCCTACATTGCATAGGCAGTCA  650

seq1  GGAAACACAGAAAAGGAAGTGAGGTTATAAAATCTTGAAGCTGCAATCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACAGAAAAGGAAGTGAGGTTATAAAATCTTGAAGCTGCAATCCC  700

seq1  CCAACATCCTCCCTCGAACAAGGCTCCACCTCCTAAAGGTTCCCCAGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATCCTCCCTCGAACAAGGCTCCACCTCCTAAAGGTTCCCCAGCCT  750

seq1  TCCAAACAGTGTGACCAGCTGGGGGCCAGGCGTTCAAACATATAAACCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACAGTGTGACCAGCTGGGGGCCAGGCGTTCAAACATATAAACCTA  800

seq1  AGGGGCCCATTTCCTATTCAAACCACCACAGAAATGAAGAAAGAAATAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCCCATTTCCTATTCAAACCACCACAGAAATGAAGAAAGAAATAAG  850

seq1  TATCCTGGCTTCCATCTGCCAACCCAGAATTGTTATATTACACTTCTGCA  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TATCCTGGCTTCCATCTGCC-ACCCAGAATTGTTATATTACACTTCTGCA  899

seq1  CCATTTGTTGGATGCATTTCTTGGTCACTTTGTTTGTCCCTGTGCCTATG  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCATTTGTTGGATGCATTTCTTGGTCACTTTGTTTGT-CCTGTGCCTATG  948

seq1  TACCTGGCATGTTACCTTAGGAATAAAAAGGCCATTGTATTCAGTGAAAT  1000
      ||||||||||| || |||| ||||||||||| ||||||| ||||||||||
seq2  TACCTGGCATG-TAACTTA-GAATAAAAAGG-CATTGTA-TCAGTGAAAT  994

seq1  TTCATTTGTGAAATTGAAACTTTTTGTCATTTTCTTAGATGGTAACTGCA  1050
      |||| |||||||| |||||||||||||   ||||| |||||   ||||||
seq2  TTCA-TTGTGAAA-TGAAACTTTTTGTTCATTTCTAAGATG--TACTGCA  1040

seq1  GAGTATTAGGAAAATCTCAGACTCCCATGGTGTTTGGATTCTCTCAGATC  1100
      ||||| |||||||   ||||||||| || ||| | ||||||||  |||| 
seq2  GAGTA-TAGGAAA--TTCAGACTCCTAT-GTG-TGGGATTCTCCTAGAT-  1084

seq1  CTAACTAGAATGTCTGCAGCTCCTGGTTCTGTATTCAGTTGGATCTAATC  1150
      || ||||| |||||||||||||   ||||||||||||||  ||||||   
seq2  CTTACTAG-ATGTCTGCAGCTC--TGTTCTGTATTCAGT--GATCTA--T  1127

seq1  CAATTGCTTGTTAGA-CAGAATTATGTCTAATGGCCT  1186
      |||| | |||||||| |||||||| |||||| |||||
seq2  CAATGGGTTGTTAGACCAGAATTA-GTCTAAGGGCCT  1163