BAC Information

Click to search

BAC

Clone NameB6Ng01-103E20
Chromosome3 (Build37)
Map Location 13,362,596 - 13,501,789
singlet/doubletdoublet
Overlap geneLOC100039823, LOC100039861, 0710005M24Rik
Upstream geneEG621965, LOC100039798, EG668033, LOC668037
Downstream geneLOC100041679, LOC100041667, LOC100039882, EG622229, LOC668062, Slc7a12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103E20.bB6Ng01-103E20.g
ACCDH911933DH911934
length1,0671,173
definitionDH911933|Mus musculus domesticus DNA, BAC clone: B6Ng01-103E20, 5' end.DH911934|Mus musculus domesticus DNA, BAC clone: B6Ng01-103E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,362,596 - 13,363,461)(13,500,621 - 13,501,789)
sequence
gaattcaaggccaaccaactctaaaaagagaaggtcaggctatcctgggc
aacatagaaaaaagaaacaattcaaacaaagaaaaagaagtaagcaggtt
aaagaaatttagaaactgttgatacaaagatataaagttacaggtctgag
ccagaacatataaatatatacaaacacacttatagcacaaatttgtgttc
aaattgtgcttttaatatttcttaaaatatctaaaagaatataaataaat
acatttgaaatgaaccagcatagttttactgagaaatggtagtaaggcac
aaaacatagttgttggtgctaaagacattctttgcttgcctttatcccaa
ggcatttttaaaaaaaatttttattaggtattttcctcatttacatttcc
aatgctatcccagaagtcccccatacccacctccccccacactccctacc
cacccacacccacttctttgccctggcgttctcctgtactgaggcatata
gagtttgcacgaccaatgggcctctctttccactgatggccaaataggcc
atcttttgatacatatgcagctagagacaggagctccggagatactggtt
agttcatattgttgttccacctatagggttacagttccttttagcccatt
aggtactttctctaactcctcaatggggggccctgtgatccataaaatag
atgactgtgagcatccacttctgtgtttgctagatcccagcatagtctca
cacgagacaactatatcaggttcctttcagcaaaatcttcttagtgtatg
caatggcatcagtgtttggaggctgattatgggatggatccctggatatg
gcagtctctagatggtccagccttttgtctcagttccaaacttcgtctct
gtaactccttccatgagtgttttgttcccattctaagaggggcaaagtgt
ccacactttggtcttccttcttcttgagtttcatgtgtttgcatattgta
actatatctagggtattgtagtttctaggctatatccacttatcagtgag
tacatatcgtttggagt
gaattccaaaatctatatataaaatattaaaaaatgttaaaaaaacaaaa
caaaacaacaaaagcacttatcttttggatgagtggtgagaactagttaa
taaatggactatcttatgagaccaagacccctctacttttgtccaaaact
atccatttttaggctgattagcaaatgacattaaaaattaggtgtcttga
taaaacacaggtagtaagaagaaagttttcctagggaaagcctctgtaaa
atcctgtcataatttgctcttcagctgtatccgaggattctggatacata
ggaccacagctggaaaaatacctaacaacagaaataaatttgagtaaata
taaaatatgctcctaaatttctcattactttcctttcagcttaacaccaa
agtcgagccatgaagttctgaacgtactcaattccatttgtctttgccct
gtttatagtgttttgtttaaaagagttgtatgtgcacaaacatgtgaaca
ctaagttatttccaacatatattatttagtttaaatagtctgagacttga
ttacaaaagtaatttgcttacaaaagaaattttagtatgtatttcttaca
tgttattatatgaattttgtttaggaaattgtaattattttcctaataaa
aacgtcattaaatgctttaactatttcgaagagtaaagttacaaattaaa
attcagcctgagattgcctggtaggattatttatggagaagcaaagcaca
ctaagtggctggcagttctgacagcttatctactgagggtgagatccgca
tcacaatgctgcagagcttctgcacaggctcaaaggctaaactatcctca
ttgggctctatttaagagtggcaaggcagggaagccactgtttttagagc
agaggggtgacaggtgatagcagcattgtaccattgtacgcatggtacct
tagtcccaagaagtcaaggaacagaaagcattgatccacagatcgcttgt
ctgtgctgccctgtttagtgatgacccagagcacatggtgggacatgaag
ggttcaatatgccactatgttatattctctcggatcctggagcatccaag
atttggttgtttgaaggggatgcacatgaagacccttgtctgaaagttac
taaggacagtctagtctctgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_13362596_13363461
seq2: B6Ng01-103E20.b_43_908

seq1  GAATTCAAGGCCAACCAACTCTAAAAAGAGAAGGTCAGGCTATCCTGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAACCAACTCTAAAAAGAGAAGGTCAGGCTATCCTGGGC  50

seq1  AACATAGAAAAAAGAAACAATTCAAACAAAGAAAAAGAAGTAAGCAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGAAAAAAGAAACAATTCAAACAAAGAAAAAGAAGTAAGCAGGTT  100

seq1  AAAGAAATTTAGAAACTGTTGATACAAAGATATAAAGTTACAGGTCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATTTAGAAACTGTTGATACAAAGATATAAAGTTACAGGTCTGAG  150

seq1  CCAGAACATATAAATATATACAAACACACTTATAGCACAAATTTGTGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACATATAAATATATACAAACACACTTATAGCACAAATTTGTGTTC  200

seq1  AAATTGTGCTTTTAATATTTCTTAAAATATCTAAAAGAATATAAATAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTGCTTTTAATATTTCTTAAAATATCTAAAAGAATATAAATAAAT  250

seq1  ACATTTGAAATGAACCAGCATAGTTTTACTGAGAAATGGTAGTAAGGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGAAATGAACCAGCATAGTTTTACTGAGAAATGGTAGTAAGGCAC  300

seq1  AAAACATAGTTGTTGGTGCTAAAGACATTCTTTGCTTGCCTTTATCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATAGTTGTTGGTGCTAAAGACATTCTTTGCTTGCCTTTATCCCAA  350

seq1  GGCATTTTTAAAAAAAATTTTTATTAGGTATTTTCCTCATTTACATTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTTTAAAAAAAATTTTTATTAGGTATTTTCCTCATTTACATTTCC  400

seq1  AATGCTATCCCAGAAGTCCCCCATACCCACCTCCCCCCACACTCCCTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTATCCCAGAAGTCCCCCATACCCACCTCCCCCCACACTCCCTACC  450

seq1  CACCCACACCCACTTCTTTGCCCTGGCGTTCTCCTGTACTGAGGCATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACACCCACTTCTTTGCCCTGGCGTTCTCCTGTACTGAGGCATATA  500

seq1  GAGTTTGCACGACCAATGGGCCTCTCTTTCCACTGATGGCCAAATAGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGCACGACCAATGGGCCTCTCTTTCCACTGATGGCCAAATAGGCC  550

seq1  ATCTTTTGATACATATGCAGCTAGAGACAGGAGCTCCGGAGATACTGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTGATACATATGCAGCTAGAGACAGGAGCTCCGGAGATACTGGTT  600

seq1  AGTTCATATTGTTGTTCCACCTATAGGGTTACAGTTCCTTTTAGCCCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATATTGTTGTTCCACCTATAGGGTTACAGTTCCTTTTAGCCCATT  650

seq1  AGGTACTTTCTCTAACTCCTCAATGGGGGGCCCTGTGATCCATAAAATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTTTCTCTAACTCCTCAATGGGGGGCCCTGTGATCCATAAAATAG  700

seq1  ATGACTGTGAGCATCCACTTCTGTGTTTGCTAGATCCCAGCATAGTCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGTGAGCATCCACTTCTGTGTTTGCTAGATCCCAGCATAGTCTCA  750

seq1  CACGAGACAACTATATCAGGTTCCTTTCAGCAAAATCTTCTTAGTGTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGACAACTATATCAGGTTCCTTTCAGCAAAATCTTCTTAGTGTATG  800

seq1  CAATGGCATCAGTGTTTGGAGGCTGATTATGGGATGGATCCCTGGATATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCATCAGTGTTTGGAGGCTGATTATGGGATGGATCCCTGGATATG  850

seq1  GCAGTCTCTAGATGGT  866
      ||||||||||||||||
seq2  GCAGTCTCTAGATGGT  866

seq1: chr3_13500621_13501789
seq2: B6Ng01-103E20.g_68_1240 (reverse)

seq1  GCTCAGTGACTAGACTGTCCTTTAGTAAC-TTCAG--CAGGGTCTTCATG  47
      |||||| ||||||||||||| |||||||| |||||   ||||||||||||
seq2  GCTCAGAGACTAGACTGTCC-TTAGTAACTTTCAGACAAGGGTCTTCATG  49

seq1  ---ACTCCCTTC-AACAACCAAAATTCTTGGATGCT-CAAGATCCGAGAG  92
         |  |||||| ||||||||||  ||||||||||| || ||||||||||
seq2  TGCATCCCCTTCAAACAACCAAA--TCTTGGATGCTCCAGGATCCGAGAG  97

seq1  AAAATAACATAGTGGCAATATTGAACCCTTTCATGTCCCACCATGTGCTC  142
      || ||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  AATATAACATAGTGGC-ATATTGAACCC-TTCATGTCCCACCATGTGCTC  145

seq1  TGGGTCATCACTAAACAAGGCAGCACAGACAAGCGATCTGTGGATCAATG  192
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGGGTCATCACTAAACAGGGCAGCACAGACAAGCGATCTGTGGATCAATG  195

seq1  CTTTCTGTTCCTTGACTTCTTGGGACTAAGGTACCATGCGTACAATGGTA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTTCCTTGACTTCTTGGGACTAAGGTACCATGCGTACAATGGTA  245

seq1  CAATGCTGCTATCACCTGTCA-CCCTCTGCTCTAAAAACAGTGGCTTCCC  291
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAATGCTGCTATCACCTGTCACCCCTCTGCTCTAAAAACAGTGGCTTCCC  295

seq1  TGCCTTGCCACTCTTAAATAGAGCCCAATGAGGATAGTTTAGCCTTTGAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGCCACTCTTAAATAGAGCCCAATGAGGATAGTTTAGCCTTTGAG  345

seq1  CCTGTGCAGAAGCTCTGCAGCATTGTGATGCGGATCTCACCCTCAGTAGA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCAGAAGCTCTGCAGCATTGTGATGCGGATCTCACCCTCAGTAGA  395

seq1  TAAGCTGTCAGAACTGCCAGCCACTTAGTGTGCTTTGCTTCTCCATAAAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGTCAGAACTGCCAGCCACTTAGTGTGCTTTGCTTCTCCATAAAT  445

seq1  AATCCTACCAGGCAATCTCAGGCTGAATTTTAATTTGTAACTTTACTCTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTACCAGGCAATCTCAGGCTGAATTTTAATTTGTAACTTTACTCTT  495

seq1  CGAAATAGTTAAAGCATTTAATGACGTTTTTATTAGGAAAATAATTACAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATAGTTAAAGCATTTAATGACGTTTTTATTAGGAAAATAATTACAA  545

seq1  TTTCCTAAACAAAATTCATATAATAACATGTAAGAAATACATACTAAAAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAAACAAAATTCATATAATAACATGTAAGAAATACATACTAAAAT  595

seq1  TTCTTTTGTAAGCAAATTACTTTTGTAATCAAGTCTCAGACTATTTAAAC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGTAAGCAAATTACTTTTGTAATCAAGTCTCAGACTATTTAAAC  645

seq1  TAAATAATATATGTTGGAAATAACTTAGTGTTCACATGTTTGTGCACATA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATATATGTTGGAAATAACTTAGTGTTCACATGTTTGTGCACATA  695

seq1  CAACTCTTTTAAACAAAACACTATAAACAGGGCAAAGACAAATGGAATTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTTTTAAACAAAACACTATAAACAGGGCAAAGACAAATGGAATTG  745

seq1  AGTACGTTCAGAACTTCATGGCTCGACTTTGGTGTTAAGCTGAAAGGAAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACGTTCAGAACTTCATGGCTCGACTTTGGTGTTAAGCTGAAAGGAAA  795

seq1  GTAATGAGAAATTTAGGAGCATATTTTATATTTACTCAAATTTATTTCTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAGAAATTTAGGAGCATATTTTATATTTACTCAAATTTATTTCTG  845

seq1  TTGTTAGGTATTTTTCCAGCTGTGGTCCTATGTATCCAGAATCCTCGGAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGGTATTTTTCCAGCTGTGGTCCTATGTATCCAGAATCCTCGGAT  895

seq1  ACAGCTGAAGAGCAAATTATGACAGGATTTTACAGAGGCTTTCCCTAGGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGAAGAGCAAATTATGACAGGATTTTACAGAGGCTTTCCCTAGGA  945

seq1  AAACTTTCTTCTTACTACCTGTGTTTTATCAAGACACCTAATTTTTAATG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTCTTCTTACTACCTGTGTTTTATCAAGACACCTAATTTTTAATG  995

seq1  TCATTTGCTAATCAGCCTAAAAATGGATAGTTTTGGACAAAAGTAGAGGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGCTAATCAGCCTAAAAATGGATAGTTTTGGACAAAAGTAGAGGG  1045

seq1  GTCTTGGTCTCATAAGATAGTCCATTTATTAACTAGTTCTCACCACTCAT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGTCTCATAAGATAGTCCATTTATTAACTAGTTCTCACCACTCAT  1095

seq1  CCAAAAGATAAGTGCTTTTGTTGTTTTGTTTTGTTTTTTTAACATTTTTT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGATAAGTGCTTTTGTTGTTTTGTTTTGTTTTTTTAACATTTTTT  1145

seq1  AATATTTTATATATAGATTTTGGAATTC  1169
      ||||||||||||||||||||||||||||
seq2  AATATTTTATATATAGATTTTGGAATTC  1173