BAC Information

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BAC

Clone NameB6Ng01-103I03
Chromosome3 (Build37)
Map Location 103,738,514 - 103,887,379
singlet/doubletdoublet
Overlap geneRsbn1, Phtf1, Magi3
Upstream geneSycp1, Nr1h5, 5730470L24Rik, Csde1, Nras, Ampd1, Dennd2c, Bcas2, Trim33, Syt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452
Downstream geneEG433634, LOC668622, Lrig2, Slc16a1, EG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103I03.bB6Ng01-103I03.g
ACCDH912077DH912078
length1,153927
definitionDH912077|Mus musculus domesticus DNA, BAC clone: B6Ng01-103I03, 5' end.DH912078|Mus musculus domesticus DNA, BAC clone: B6Ng01-103I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,738,514 - 103,739,685)(103,886,455 - 103,887,379)
sequence
gaattcttatcagtcaatgagccttttagattccttaacctagtctcagg
cacctcttttttcttccctgggaactttagctcatgaagtaaaaagtagg
attgtttcatgtaagaaaagttagagtttctattacttttatatttttta
gttactatattgggtcaagctagggtccatgtataggctgtttttctttt
tgtttttaattttttaaaaagatttatttatttatttatttatttattta
tttatttatttattatatgtgtgtacactgtagctgtcttcagacactcc
agaagagggcatcaaatttttgttatggatggttgtgagtcaccatgtgg
ttgctgggatttgaactcaggaagagcagtcggcgctcttaaccgctgag
ccatctcacctgtcttgtttttaattttttaaaaagattttatttatttc
atttatatgagtacactgtaactgtcttcagacacaccagaattgggtat
gggatcctgttacagatggttgtgagccaccatgtagttgctgggaattg
aactcaggatctctggaagagcattcggttttcttaactgctgagccatc
cctgccccccctttaaacattttataatcattgactactttaacacttga
ggaggtaagttcattgtgtcggttggaacaccatgctgatccttgtttgc
ttacttcactcctagggactgaaggacagctttgtgaatttgaatttcta
aaagaccatgcatttattataattctgtaagagtattcatttctaatttt
taattggtcattggataagtctcagtcttgcccaaaaatgtttgaatgtt
tatctaatctttaggtcagttaatggagaaatttctatgttttttctttt
tttctaaaatttttatctgtatacattttaggatcatatgatttgtgctt
ttttttttcaagacagggtttctctgtgtagccctggctgtcctggaact
cactctgtagacagctggctcggactagaaatccgctgcctctgcctcag
tgctgggattaagggtgcgcccaccactgcccggctggatctttttaata
gggataaaattaagctatagattgaaaacgcttgaatattaggctgagtg
tta
gaattctagttcctgaggatctgatgcccgctggcaaccgtgggtactat
tccagaatgtggcgaatgtagacttacataggtacatactcatacatata
aaacaaatgcatttttccaacaataattgaaactaaactactaagtgaaa
atacagggagaaattgtatttaacaaagactttctgataggaaacaaaag
caacaacaacaaaggaggttataaactaaaaactttttcatgaggtggtc
agtgagtaaaaaggcaaattatgccataggagaaaagtctccaaaccatg
tgttgaacagagagtttgtagatacagcatacaggtgaatatttactgat
aggtaacagctttgttcctggacataatgtggcagatctgtgttaactgc
ttatgttacaatgcatgactatgagacagaatattagtgtagatccagaa
tgtttaacttttacattctaggaatagccttgtgaatactgttttattct
ctggggaatatttggtaagatcttaacagatgacctatttttgctaattt
agcaatcacatttgcattggtatactcaaagtcagacttttctcaagtag
aaattgaatttggtttaagaaggtatttccacagctttttttgtttgttt
tttctgaccatttgttttctcctaggaatctaggagttaggatctcttcc
attttactaaatttgattccactggttttattttagggctattctctctg
tgtaaggatgtatgacacacattctaaagtactctgtttcctatacaaat
tatttagtttatacacatggccgtggtctgctaacaagcatcatatttca
aaagtagtcacagactgtgagggctagagacagttagagaggtcacaggg
tggctttctactttatagccctcccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_103738514_103739685
seq2: B6Ng01-103I03.b_46_1198

seq1  GAATTCTTATCAGTCAATGAGCCTTTTAGATTCCTTAACCTAGTCTCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATCAGTCAATGAGCCTTTTAGATTCCTTAACCTAGTCTCAGG  50

seq1  CACCTCTTTTTTCTTCCCTGGGAACTTTAGCTCATGAAGTAAAAAGTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTTTTTTCTTCCCTGGGAACTTTAGCTCATGAAGTAAAAAGTAGG  100

seq1  ATTGTTTCATGTAAGAAAAGTTAGAGTTTCTATTACTTTTATATTTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTCATGTAAGAAAAGTTAGAGTTTCTATTACTTTTATATTTTTTA  150

seq1  GTTACTATATTGGGTCAAGCTAGGGTCCATGTATAGGCTGTTTTTCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTATATTGGGTCAAGCTAGGGTCCATGTATAGGCTGTTTTTCTTTT  200

seq1  TGTTTTTAATTTTTTAAAAAGATTTATTTATTTATTTATTTATTTATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAATTTTTTAAAAAGATTTATTTATTTATTTATTTATTTATTTA  250

seq1  TTTATTTATTTATTATATGTGTGTACACTGTAGCTGTCTTCAGACACTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTATATGTGTGTACACTGTAGCTGTCTTCAGACACTCC  300

seq1  AGAAGAGGGCATCAAATTTTTGTTATGGATGGTTGTGAGTCACCATGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGGCATCAAATTTTTGTTATGGATGGTTGTGAGTCACCATGTGG  350

seq1  TTGCTGGGATTTGAACTCAGGAAGAGCAGTCGGCGCTCTTAACCGCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGGATTTGAACTCAGGAAGAGCAGTCGGCGCTCTTAACCGCTGAG  400

seq1  CCATCTCACCTGTCTTGTTTTTAATTTTTTAAAAAGATTTTATTTATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCACCTGTCTTGTTTTTAATTTTTTAAAAAGATTTTATTTATTTC  450

seq1  ATTTATATGAGTACACTGTAACTGTCTTCAGACACACCAGAATTGGGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATGAGTACACTGTAACTGTCTTCAGACACACCAGAATTGGGTAT  500

seq1  GGGATCCTGTTACAGATGGTTGTGAGCCACCATGTAGTTGCTGGGAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCTGTTACAGATGGTTGTGAGCCACCATGTAGTTGCTGGGAATTG  550

seq1  AACTCAGGATCTCTGGAAGAGCATTCGGTTTTCTTAACTGCTGAGCCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGATCTCTGGAAGAGCATTCGGTTTTCTTAACTGCTGAGCCATC  600

seq1  CCTGCCCCCCCTTTAAACATTTTATAATCATTGACTACTTTAACACTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCCCCCTTTAAACATTTTATAATCATTGACTACTTTAACACTTGA  650

seq1  GGAGGTAAGTTCATTGTGTCGGTTGGAACACCATGCTGATCCTTGTTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAAGTTCATTGTGTCGGTTGGAACACCATGCTGATCCTTGTTTGC  700

seq1  TTACTTCACTCCTAGGGACTGAAGGACAGCTTTGTGAATTTGAATTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCACTCCTAGGGACTGAAGGACAGCTTTGTGAATTTGAATTTCTA  750

seq1  AAAGACCATGCATTTATTATAATTCTGTAAGAGTATTCATTTCTAATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCATGCATTTATTATAATTCTGTAAGAGTATTCATTTCTAATTTT  800

seq1  TAATTGGTCATTGGATAAGTCTCAGTCTTGGCCAAAAATGTTTGAATGTT  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAATTGGTCATTGGATAAGTCTCAGTCTTGCCCAAAAATGTTTGAATGTT  850

seq1  TATCTAATCTTTAGGTCAGTTAATGGAGAAATTTCTATGTTTTTTCTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAATCTTTAGGTCAGTTAATGGAGAAATTTCTATGTTTTTTCTTTT  900

seq1  TTTCTTAAAAATTTTTATCTGTATACATTTTAGGAATCAATATGATTTGT  950
      |||||  ||||||||||||||||||||||||||| ||| |||||||||||
seq2  TTTCT--AAAATTTTTATCTGTATACATTTTAGG-ATC-ATATGATTTGT  946

seq1  GCTTTTTTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGG  996

seq1  AACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCT  1050
      ||||||||||||||||   ||||| |||| ||| ||||||||| ||||||
seq2  AACTCACTCTGTAGAC--AGCTGG-CTCGGACT-AGAAATCCG-CTGCCT  1041

seq1  CTGCCTCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACTGCCCGGCTGT  1100
      |||||||  |||||||||||||| |||| || ||||||||||||||||| 
seq2  CTGCCTC--AGTGCTGGGATTAAGGGTGCGC-CCACCACTGCCCGGCTG-  1087

seq1  GATCTTTTTAATTAGGTATAAATTATAGCTATAGTATTGAAAACGCTTGT  1150
      ||||||||||| |||| ||||| |  |||||||| |||||||||||||| 
seq2  GATCTTTTTAA-TAGGGATAAAATTAAGCTATAG-ATTGAAAACGCTTG-  1134

seq1  AATATTTTAGGCTGAGTTGTTA  1172
      ||||  |||||||||| |||||
seq2  AATA--TTAGGCTGAG-TGTTA  1153

seq1: chr3_103886455_103887379
seq2: B6Ng01-103I03.g_67_993 (reverse)

seq1  AGGGGAGGGCTATAAAGTAG-AAGCCACCCTGTGACCTCTCTAACTGTCT  49
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGGGGAGGGCTATAAAGTAGAAAGCCACCCTGTGACCTCTCTAACTGTCT  50

seq1  CTAGCCCTCACAGTCTGTGACTACTTTTG-AATATGATGCTTGTTAGCAG  98
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTAGCCCTCACAGTCTGTGACTACTTTTGAAATATGATGCTTGTTAGCAG  100

seq1  ACCACGGCCATGTGTATAAACTAAATAATTTGTATAGGAAACAGAGTACT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGGCCATGTGTATAAACTAAATAATTTGTATAGGAAACAGAGTACT  150

seq1  TTAGAATGTGTGTCATACATCCTTACACAGAGAGAATAGCCCTAAAATAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATGTGTGTCATACATCCTTACACAGAGAGAATAGCCCTAAAATAA  200

seq1  AACCAGTGGAATCAAATTTAGTAAAATGGAAGAGATCCTAACTCCTAGAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTGGAATCAAATTTAGTAAAATGGAAGAGATCCTAACTCCTAGAT  250

seq1  TCCTAGGAGAAAACAAATGGTCAGAAAAAACAAACAAAAAAAGCTGTGGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGAGAAAACAAATGGTCAGAAAAAACAAACAAAAAAAGCTGTGGA  300

seq1  AATACCTTCTTAAACCAAATTCAATTTCTACTTGAGAAAAGTCTGACTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTTCTTAAACCAAATTCAATTTCTACTTGAGAAAAGTCTGACTTT  350

seq1  GAGTATACCAATGCAAATGTGATTGCTAAATTAGCAAAAATAGGTCATCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATACCAATGCAAATGTGATTGCTAAATTAGCAAAAATAGGTCATCT  400

seq1  GTTAAGATCTTACCAAATATTCCCCAGAGAATAAAACAGTATTCACAAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGATCTTACCAAATATTCCCCAGAGAATAAAACAGTATTCACAAGG  450

seq1  CTATTCCTAGAATGTAAAAGTTAAACATTCTGGATCTACACTAATATTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCTAGAATGTAAAAGTTAAACATTCTGGATCTACACTAATATTCT  500

seq1  GTCTCATAGTCATGCATTGTAACATAAGCAGTTAACACAGATCTGCCACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATAGTCATGCATTGTAACATAAGCAGTTAACACAGATCTGCCACA  550

seq1  TTATGTCCAGGAACAAAGCTGTTACCTATCAGTAAATATTCACCTGTATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCCAGGAACAAAGCTGTTACCTATCAGTAAATATTCACCTGTATG  600

seq1  CTGTATCTACAAACTCTCTGTTCAACACATGGTTTGGAGACTTTTCTCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCTACAAACTCTCTGTTCAACACATGGTTTGGAGACTTTTCTCCT  650

seq1  ATGGCATAATTTGCCTTTTTACTCACTGACCACCTCATGAAAAAGTTTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATAATTTGCCTTTTTACTCACTGACCACCTCATGAAAAAGTTTTT  700

seq1  AGTTTATAACCTCCTTTGTTGTTGTTGCTTTTGTTTCCTATCAGAAAGTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATAACCTCCTTTGTTGTTGTTGCTTTTGTTTCCTATCAGAAAGTC  750

seq1  TTTGTTAAATACAATTTCTCCCTGTATTTTCACTTAGTAGTTTAGTTTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAAATACAATTTCTCCCTGTATTTTCACTTAGTAGTTTAGTTTCA  800

seq1  ATTATTGTTGGAAAAATGCATTTGTTTTATATGTATGAGTATGTACCTAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGTTGGAAAAATGCATTTGTTTTATATGTATGAGTATGTACCTAT  850

seq1  GTAAGTCTACATTCGCCACATTCTGGAATAGTACCCACGGTTGCCAGCGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCTACATTCGCCACATTCTGGAATAGTACCCACGGTTGCCAGCGG  900

seq1  GCATCAGATCCTCAGGAACTAGAATTC  925
      |||||||||||||||||||||||||||
seq2  GCATCAGATCCTCAGGAACTAGAATTC  927