BAC Information

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BAC

Clone NameB6Ng01-103M08
Chromosome3 (Build37)
Map Location 141,779,440 - 141,870,052
singlet/doubletdoublet
Overlap geneGabarapl2-ps3
Upstream genePdha2, Unc5c, LOC100039923, Bmpr1b
Downstream genePdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103M08.bB6Ng01-103M08.g
ACCDH912260DH912261
length1,2051,132
definitionDH912260|Mus musculus domesticus DNA, BAC clone: B6Ng01-103M08, 5' end.DH912261|Mus musculus domesticus DNA, BAC clone: B6Ng01-103M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,779,440 - 141,780,656)(141,868,891 - 141,870,052)
sequence
gaattctgtaatttcacatcctgaaaattttggaattagaaagtttaacg
ctaacaatacttctattatattttctacttgaaaactttttgttttgaaa
attttttaaactgtccaaattaataagattgtgttgttggccaccatgac
aagtatattcagctattcgatattatcattattttttacaataacccaaa
tatattagttgtcagaactggaccgaatagctaactctattttcatatat
ttactaaattatgcttccagattttaaattccaaaaccactgttttgttt
tccttcaagcctctcattgagacattgatgctatgaactccactgcctcc
atgttgaacttcccactgaccagaggtgctttccgaccatgcattagact
tccttctcaaatatgcaaatgtataatattcttacactactttgcaagcc
aattgttatccaatataataaattgtctccttgttttactctgtgtttcc
tatgagaaactttctaggatacaaggtctagattgtgtgcactctttttc
aaaacctgagcatctagggttcctttcctgtctgaccttctcaggcaagg
cctatttcctgagctgtctttctcaggacactgtgatggtcagcactgtg
ctggaatgcttaccaatttgtgctcagcacctaccagggcctcccatacc
cctgctaagcacaccaacaaattaagagcattgtccaaggaataaattcc
gagtgtcaggaagccataaagatcaagtatgtgttcttgtgaaaatttgt
atcctgaggaatttcactatctcatccatcttttgcaactatcacttctg
taagccatggaggcaaaaatctgaagagcagccagagcagccaggatgtg
gtccatgcggtcagatacataattgtaaataatgcaaagccacttttaca
aatcctgaatcataactttcacaccttttcatcctccacacctactctgc
ctggcaaggtacatttctgtctttgacagttcacccacatccacaacctc
agcatgaaaactgccacttaatatcactactctggatgaatgattctcta
aagtcatctgtttttaatgattatattcttcatttcaacttatgttcaga
gaaaccctggtgtgagtctttccacacggatctagatcatcccacctggg
aggct
gaattccattatttcttaataatgatactcatgttacagaaagtgaaact
tgctaaaacaacagaagctcaattattgaagtttggtttgaattattaag
gctttctacagctaattctcccaatgtcttcctaattcaataatcctgaa
ggtttctaactattttagccttatgagattccattaaaaagtcatatagg
accttgggaaatgagaagctatttttttcggcaattaaaagacccacaaa
ggtggggtcatataaaattagggaaacaatgctctccaataggaaactgt
tatagacgaaggactcttgattcccatcagacagtgctagctgaagtcaa
ttttccaatccccttgacttgatgtgggaagaaatgtgtttaaaggggca
tgagttctttagtaaatgggtgtgaggcaaaggcaggaactactttctag
gagaggccactctcagaggtgggggcagctttataaaatgatccggccca
ttggcccatcgataaatacagaacgtgtgctgaggttctgaggctgggcc
ctccttcaggaactgccctgggggagaaaagttaagatcccagagtaacc
aggaggtgttaaggaggcaataaaatcttttcctctgcatggcagccagg
atctggctgaaggagaaggtgtcaggggccatgaaaaggtccaaataact
tgaaccttgagcatcttttaagatcacaggctttggttgggataactgat
aaaatactgtataaaatgaagcagagtgtcaatctataaggtcctggcaa
aagtgagacagatgtgtaatatttaactggtatttggtaagagaataaat
cagtattgatttccacaacaaacatcttttgagtgtcgtgtagttttaca
cttaaccattttagtccttattttctacactcataaaagcaatgtactat
gaatttcccagtgccttttcactctgaaatgcttggccacattgcataga
tggagaatttacgaagagacacgcaacttttgaggtcgactcactgcttt
tctataacattcaagaataatgaatatttatttactagcactaggttgca
gcaggcacattctagagtcttaaaaatgtaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_141779440_141780656
seq2: B6Ng01-103M08.b_46_1250

seq1  GAATTCTGTAATTTCACATCCTGAAAATTTTGGAATTAGAAAGTTTAACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAATTTCACATCCTGAAAATTTTGGAATTAGAAAGTTTAACG  50

seq1  CTAACAATACTTCTATTATATTTTCTACTTGAAAACTTTTTGTTTTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAATACTTCTATTATATTTTCTACTTGAAAACTTTTTGTTTTGAAA  100

seq1  ATTTTTTAAACTGTCCAAATTAATAAGATTGTGTTGTTGGCCACCATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAAACTGTCCAAATTAATAAGATTGTGTTGTTGGCCACCATGAC  150

seq1  AAGTATATTCAGCTATTCGATATTATCATTATTTTTTACAATAACCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATATTCAGCTATTCGATATTATCATTATTTTTTACAATAACCCAAA  200

seq1  TATATTAGTTGTCAGAACTGGACCGAATAGCTAACTCTATTTTCATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAGTTGTCAGAACTGGACCGAATAGCTAACTCTATTTTCATATAT  250

seq1  TTACTAAATTATGCTTCCAGATTTTAAATTCCAAAACCACTGTTTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAATTATGCTTCCAGATTTTAAATTCCAAAACCACTGTTTTGTTT  300

seq1  TCCTTCAAGCCTCTCATTGAGACATTGATGCTATGAACTCCACTGCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAAGCCTCTCATTGAGACATTGATGCTATGAACTCCACTGCCTCC  350

seq1  ATGTTGAACTTCCCACTGACCAGAGGTGCTTTCCGACCATGCATTAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGAACTTCCCACTGACCAGAGGTGCTTTCCGACCATGCATTAGACT  400

seq1  TCCTTCTCAAATATGCAAATGTATAATATTCTTACACTACTTTGCAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCAAATATGCAAATGTATAATATTCTTACACTACTTTGCAAGCC  450

seq1  AATTGTTATCCAATATAATAAATTGTCTCCTTGTTTTACTCTGTGTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTATCCAATATAATAAATTGTCTCCTTGTTTTACTCTGTGTTTCC  500

seq1  TATGAGAAACTTTCTAGGATACAAGGTCTAGATTGTGTGCACTCTTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAAACTTTCTAGGATACAAGGTCTAGATTGTGTGCACTCTTTTTC  550

seq1  AAAACCTGAGCATCTAGGGTTCCTTTCCTGTCTGACCTTCTCAGGCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGAGCATCTAGGGTTCCTTTCCTGTCTGACCTTCTCAGGCAAGG  600

seq1  CCTATTTCCTGAGCTGTCTTTCTCAGGACACTGTGATGGTCAGCACTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTCCTGAGCTGTCTTTCTCAGGACACTGTGATGGTCAGCACTGTG  650

seq1  CTGGAATGCTTACCAATTTGTGCTCAGCACCTACCAGGGCCTCCCATACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATGCTTACCAATTTGTGCTCAGCACCTACCAGGGCCTCCCATACC  700

seq1  CCTGCTAAGCACACCAACAAATTAAGAGCATTGTCCAAGGAATAAATTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTAAGCACACCAACAAATTAAGAGCATTGTCCAAGGAATAAATTCC  750

seq1  GAGTGTCAGGAAGCCATAAAGATCAAGTATGTGTTCTTGTGAAAATTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCAGGAAGCCATAAAGATCAAGTATGTGTTCTTGTGAAAATTTGT  800

seq1  ATCCTGAGGAATTTCACTATCTCATCCATCTTTTGCAACTATCACTTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAGGAATTTCACTATCTCATCCATCTTTTGCAACTATCACTTCTG  850

seq1  TAAGCCATGGAGGCAAAAATCTGAAGAGCAGCCAGAGCAGCCAGGATGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCATGGAGGCAAAAATCTGAAGAGCAGCCAGAGCAGCCAGGATGTG  900

seq1  GTCCATGCGGTCAGATACATAATTGTAAACTAATGCAAAGCCACTCTTAC  950
      ||||||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  GTCCATGCGGTCAGATACATAATTGTAAA-TAATGCAAAGCCACTTTTAC  949

seq1  AAATCCTGAATCATAAACTTTCAACACCTTTTCCATCCTCCCACACCTAC  1000
      |||||||||||||| ||||||| ||||||||| |||||| ||||||||||
seq2  AAATCCTGAATCAT-AACTTTC-ACACCTTTT-CATCCT-CCACACCTAC  995

seq1  TCTGCCTGGCAAGGTACAATTTCTTGTTCTTTGACAGTTCACCCACATCC  1050
      ||||||||||||||||| ||||||   |||||||||||||||||||||||
seq2  TCTGCCTGGCAAGGTAC-ATTTCT--GTCTTTGACAGTTCACCCACATCC  1042

seq1  CACACCTCAGCATGAAAACTG-CACTTAAATATCACTACTCTGGATGGAA  1099
         |||||||||||||||||| ||||| |||||||||||||||||| |||
seq2  ACAACCTCAGCATGAAAACTGCCACTT-AATATCACTACTCTGGAT-GAA  1090

seq1  TGAATTTCTCTAAAGTCATCTGTTTTAAATGGATTATA-TCTTCATTTTC  1148
      |||  ||||||||||||||||||||| ||| ||||||| |||||||||  
seq2  TGA--TTCTCTAAAGTCATCTGTTTTTAAT-GATTATATTCTTCATTT--  1135

seq1  CAAACTATGTTCCAGA-AAACCCTGGTGT-AGTCTTTCCCACACGTATCA  1196
      |||  |||||| |||| |||||||||||| ||||||| ||||||| ||| 
seq2  CAACTTATGTT-CAGAGAAACCCTGGTGTGAGTCTTT-CCACACGGATCT  1183

seq1  GAATCA-CCCACCTGGGAGGCT  1217
        |||| |||||||||||||||
seq2  AGATCATCCCACCTGGGAGGCT  1205

seq1: chr3_141868891_141870052
seq2: B6Ng01-103M08.g_68_1199 (reverse)

seq1  TCTACATAGTCTTAACATTTTTAGACTCTAGCATGGTGCCTGCTGCAAAC  50
      |||||||          |||| ||||||||| || ||||||||||||| |
seq2  TCTACAT----------TTTTAAGACTCTAGAAT-GTGCCTGCTGCAACC  39

seq1  TAGTGCTTAGTAAATAAATATTCATTTATTCTATGAATGTTATAGAAAAG  100
      |||||| ||||||||||||||||| ||||||| |||||||||||||||||
seq2  TAGTGC-TAGTAAATAAATATTCA-TTATTCT-TGAATGTTATAGAAAAG  86

seq1  CAGTTGAGTCGACCTTCATAAATTTTCTGTGTTTCTCTTTTTCTTTAAAT  150
      ||| |||||||||| ||| || |    || || ||||||      |||||
seq2  CAG-TGAGTCGACC-TCAAAAGT----TGCGTGTCTCTT----CGTAAAT  126

seq1  TCTCCATCTATGGCAATGTGGCCAAAGCATTTCAGAGTGAAAAGGCACTT  200
      ||||||||||| ||||||||||| ||||||||||||||||||||||||| 
seq2  TCTCCATCTAT-GCAATGTGGCC-AAGCATTTCAGAGTGAAAAGGCACTG  174

seq1  GGGAATTCAATAGTACAATTGCTTTTATGAGTGTAAGAAAATAAGGACTA  250
      || ||||| ||||||| ||||||||||||||||| |||||||||||||||
seq2  GGAAATTC-ATAGTAC-ATTGCTTTTATGAGTGT-AGAAAATAAGGACTA  221

seq1  AAATGGTTAAGTGTAAAACTACACGACACCTCAAAAGATGTTTGTTGTGG  300
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAATGGTTAAGTGTAAAACTACACGACA-CTCAAAAGATGTTTGTTGTGG  270

seq1  AAATCAATACTGATTTATTCTCTTACCAAATACCAGTTAAATATTACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATACTGATTTATTCTCTTACCAAATACCAGTTAAATATTACACA  320

seq1  TCTGTCTCACTTTTGCCAGGACCTTATAGATTGACACTCTGCTTCATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCACTTTTGCCAGGACCTTATAGATTGACACTCTGCTTCATTTT  370

seq1  ATACAGTATTTTATCAGTTATCCCAACCAAAGCCTGTGATCTTAAAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTATTTTATCAGTTATCCCAACCAAAGCCTGTGATCTTAAAAGAT  420

seq1  GCTCAAGGTTCAAGTTATTTGGACCTTTTCATGGCCCCTGACACCTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGGTTCAAGTTATTTGGACCTTTTCATGGCCCCTGACACCTTCTC  470

seq1  CTTCAGCCAGATCCTGGCTGCCATGCAGAGGAAAAGATTTTATTGCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCCAGATCCTGGCTGCCATGCAGAGGAAAAGATTTTATTGCCTCC  520

seq1  TTAACACCTCCTGGTTACTCTGGGATCTTAACTTTTCTCCCCCAGGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACCTCCTGGTTACTCTGGGATCTTAACTTTTCTCCCCCAGGGCAG  570

seq1  TTCCTGAAGGAGGGCCCAGCCTCAGAACCTCAGCACACGTTCTGTATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAAGGAGGGCCCAGCCTCAGAACCTCAGCACACGTTCTGTATTTA  620

seq1  TCGATGGGCCAATGGGCCGGATCATTTTATAAAGCTGCCCCCACCTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATGGGCCAATGGGCCGGATCATTTTATAAAGCTGCCCCCACCTCTGA  670

seq1  GAGTGGCCTCTCCTAGAAAGTAGTTCCTGCCTTTGCCTCACACCCATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCCTCTCCTAGAAAGTAGTTCCTGCCTTTGCCTCACACCCATTTA  720

seq1  CTAAAGAACTCATGCCCCTTTAAACACATTTCTTCCCACATCAAGTCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAACTCATGCCCCTTTAAACACATTTCTTCCCACATCAAGTCAAG  770

seq1  GGGATTGGAAAATTGACTTCAGCTAGCACTGTCTGATGGGAATCAAGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGGAAAATTGACTTCAGCTAGCACTGTCTGATGGGAATCAAGAGT  820

seq1  CCTTCGTCTATAACAGTTTCCTATTGGAGAGCATTGTTTCCCTAATTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGTCTATAACAGTTTCCTATTGGAGAGCATTGTTTCCCTAATTTTA  870

seq1  TATGACCCCACCTTTGTGGGTCTTTTAATTGCCGAAAAAAATAGCTTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACCCCACCTTTGTGGGTCTTTTAATTGCCGAAAAAAATAGCTTCTC  920

seq1  ATTTCCCAAGGTCCTATATGACTTTTTAATGGAATCTCATAAGGCTAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCAAGGTCCTATATGACTTTTTAATGGAATCTCATAAGGCTAAAA  970

seq1  TAGTTAGAAACCTTCAGGATTATTGAATTAGGAAGACATTGGGAGAATTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGAAACCTTCAGGATTATTGAATTAGGAAGACATTGGGAGAATTA  1020

seq1  GCTGTAGAAAGCCTTAATAATTCAAACCAAACTTCAATAATTGAGCTTCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGAAAGCCTTAATAATTCAAACCAAACTTCAATAATTGAGCTTCT  1070

seq1  GTTGTTTTAGCAAGTTTCACTTTCTGTAACATGAGTATCATTATTAAGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTAGCAAGTTTCACTTTCTGTAACATGAGTATCATTATTAAGAA  1120

seq1  ATAATGGAATTC  1162
      ||||||||||||
seq2  ATAATGGAATTC  1132