BAC Information

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BAC

Clone NameB6Ng01-104E01
Chromosome3 (Build37)
Map Location 77,905,415 - 78,064,733
singlet/doubletdoublet
Overlap geneLOC626479
Upstream geneDnmt3a-ps1, EG626461, LOC667526
Downstream geneLOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104E01.bB6Ng01-104E01.g
ACCDH912607DH912608
length1,125568
definitionDH912607|Mus musculus domesticus DNA, BAC clone: B6Ng01-104E01, 5' end.DH912608|Mus musculus domesticus DNA, BAC clone: B6Ng01-104E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,905,415 - 77,906,547)(78,064,161 - 78,064,733)
sequence
gaattctttgggtcttacaatctcagattgattgtaagagatgatcttaa
gaaaaaagttgcatgacatatttttaaataataaattgaccatttcatat
attcattaaaggtggaagagcattatatatgtagatgagaagcaataaat
gccttacaaacaaattaaattaaattcatatttcactattttaatcattg
gcatcattgagaagaaacttaaggaaatgattataatacctttagttaat
aagaaagaaccagcaaaaattcagaaaaggaacaaagatcattcatttcc
agggcatttctgaaatagaaaaaagtctaggaattacagacggaagtctg
gaaaaaaaatgagaaaacaaagaagcttctgacgtttgtggtttggacca
ccgagtagatgccatagatagatgatggcagcaatcatcacacacatctt
ttcaaacctgaattacatttatctgcaaagaattggacatgaatgtgctt
aaacagctggactattgcccagaagaaatttagaaaaccagccgatagca
tttagtattatgggagtattatggcaacctgcacttgtaacctgaatcca
acacaattacctgtctgagtaccattatgcaagttaatgtaacctttcac
tctttgtgataagaaaacaagaagagaggataacaatgctgaatctgcta
ataaggacagattaatatagttgaaccagagaaaatttattgagtattac
ttggtattattattatagggatgaataatttaatcattagctcatataag
attggccaagacatacagaaaagaaaaacaagataaaaagattttcacag
ttcaaaatagagaaatataacattccagagaaaggatagaacacaataga
taataataaggtctagaccagcagaccgtgacagtccaggattgtctaag
atgatcaaacaacacaaacaggatgaaaatagaagtcagttttgtgatgt
atgattggaaacagtatgcagaatatataataatactaaattattccctg
ttttaagatgtggtgactttgccagagtatgtgcatctgacatattcaat
tgtttagtaaatatctagagcttat
cagggccaggaggcaggagagggtggactggggaggagggttagctggga
gggaataggggatttttggagaggaaactaggaaaggggataacatttga
tatgtgtataaaataattaaaaaataaataaataagataaataaatttta
aaaaatgacactctgaaagaaaaagtatttaagggaatttaagggaactc
atgttaatacaggccacaatgtggggcagtatgtccatcactgcaatgga
tgaaagtctctaaattagtggaagtgaacctcaatatctgtaacatctat
atcctggaaagtgaaaaccagatggaaatgaagtattcttaatgcaactg
gtcacatatataattcaggttttccaaaatttttaacagtactggattgc
tttatagaatttacaactgttattcagagagcgttctgaagccagaactg
cagctcttccttctattgccagggcttagcctctgaaataatcttttttt
ttttcttcacagtttttaataacactttatcagggtaataaaagttcttt
ttttatttaaaaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_77905415_77906547
seq2: B6Ng01-104E01.b_46_1170

seq1  GAATTCTTTGGGTCTTACAATCTCAGATTGATTGTAAGAGATGATCTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGGTCTTACAATCTCAGATTGATTGTAAGAGATGATCTTAA  50

seq1  GAAAAAAGTTGCATGACATATTTTTAAATAATAAATTGACCATTTCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGTTGCATGACATATTTTTAAATAATAAATTGACCATTTCATAT  100

seq1  ATTCATTAAAGGTGGAAGAGCATTATATATGTAGATGAGAAGCAATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTAAAGGTGGAAGAGCATTATATATGTAGATGAGAAGCAATAAAT  150

seq1  GCCTTACAAACAAATTAAATTAAATTCATATTTCACTATTTTAATCATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTACAAACAAATTAAATTAAATTCATATTTCACTATTTTAATCATTG  200

seq1  GCATCATTGAGAAGAAACTTAAGGAAATGATTATAATACCTTTAGTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATTGAGAAGAAACTTAAGGAAATGATTATAATACCTTTAGTTAAT  250

seq1  AAGAAAGAACCAGCAAAAATTCAGAAAAGGAACAAAGATCATTCATTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAACCAGCAAAAATTCAGAAAAGGAACAAAGATCATTCATTTCC  300

seq1  AGGGCATTTCTGAAATAGAAAAAAGTCTAGGAATTACAGACGGAAGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATTTCTGAAATAGAAAAAAGTCTAGGAATTACAGACGGAAGTCTG  350

seq1  GAAAAAAAATGAGAAAACAAAGAAGCTTCTGACGTTTGTGGTTTGGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAATGAGAAAACAAAGAAGCTTCTGACGTTTGTGGTTTGGACCA  400

seq1  CCGAGTAGATGCCATAGATAGATGATGGCAGCAATCATCACACACATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTAGATGCCATAGATAGATGATGGCAGCAATCATCACACACATCTT  450

seq1  TTCAAACCTGAATTACATTTATCTGCAAAGAATTGGACATGAATGTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACCTGAATTACATTTATCTGCAAAGAATTGGACATGAATGTGCTT  500

seq1  AAACAGCTGGACTATTGCCCAGAAGAAATTTAGAAAACCAGCCGATAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTGGACTATTGCCCAGAAGAAATTTAGAAAACCAGCCGATAGCA  550

seq1  TTTAGTATTATGGGAGTATTATGGCAACCTGCACTTGTAACCTGAATCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTATTATGGGAGTATTATGGCAACCTGCACTTGTAACCTGAATCCA  600

seq1  ACACAATTACCTGTCTGAGTACCATTATGCAAGTTAATGTAACCTTTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATTACCTGTCTGAGTACCATTATGCAAGTTAATGTAACCTTTCAC  650

seq1  TCTTTGTGATAAGAAAACAAGAAGAGAGGATAACAATGCTGAATCTGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGATAAGAAAACAAGAAGAGAGGATAACAATGCTGAATCTGCTA  700

seq1  ATAAGGACAGATTAATATAGTTGAACCAGAGAAAATTTATTGAGTATTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGACAGATTAATATAGTTGAACCAGAGAAAATTTATTGAGTATTAC  750

seq1  TTGGTATTATTATTATAGGGATGAATAATTTAATCATTAGCTCATATAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATTATTATTATAGGGATGAATAATTTAATCATTAGCTCATATAAG  800

seq1  ATTGGCCAAGACATACAGAAAAGAAAAACAAGATAAAAAGATTTTCACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCAAGACATACAGAAAAGAAAAACAAGATAAAAAGATTTTCACAG  850

seq1  TTCAAAATAGAGAAATATAACATTCCAGAGAAAGGATAGAACACAATAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATAGAGAAATATAACATTCCAGAGAAAGGATAGAACACAATAGA  900

seq1  TAATAATAAGGTCTAGACCAGCAGACCGTGACAGTCCAGGATTGTCTAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAAGGTCTAGACCAGCAGACCGTGACAGTCCAGGATTGTCTAAG  950

seq1  ATGATCAAAACAACACAAACAGAATGAAAATTAGAAGTCAGTTTTGTGAT  1000
      |||||| ||||||||||||||| ||||||| |||||||||||||||||||
seq2  ATGATC-AAACAACACAAACAGGATGAAAA-TAGAAGTCAGTTTTGTGAT  998

seq1  GTATGATTGGAAACAGTATGCAGAATATATAATAATACTAAATTTATTCC  1050
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTATGATTGGAAACAGTATGCAGAATATATAATAATACTAAA-TTATTCC  1047

seq1  CTGTTTTAGGAATTGTGTGACTTTTGCAAGAGTATGTGCATTCTGACATA  1100
      |||||||| ||  || ||||| ||||| |||||||||||| |||||||||
seq2  CTGTTTTAAGATGTG-GTGAC-TTTGCCAGAGTATGTGCA-TCTGACATA  1094

seq1  TTTCAATTTGTTTAGTAAATATCTAGAGCTTAT  1133
       ||||| ||||||||||||||||||||||||||
seq2  -TTCAA-TTGTTTAGTAAATATCTAGAGCTTAT  1125

seq1: chr3_78064161_78064733
seq2: B6Ng01-104E01.g_67_640 (reverse)

seq1  TTTTTTTTTTAAAT-AAGAAAGAACTTTTATTACCCTGATAAAGTGTTAT  49
      |||||||||||||| || ||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAAATAAAAAAAGAACTTTTATTACCCTGATAAAGTGTTAT  50

seq1  TAAAAACTGTGAAGAAAAAAAAAAAGATTATTTCAGAGGCTAAGCCCTGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACTGTGAAGAAAAAAAAAAAGATTATTTCAGAGGCTAAGCCCTGG  100

seq1  CAATAGAAGGAAGAGCTGCAGTTCTGGCTTCAGAACGCTCTCTGAATAAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAAGGAAGAGCTGCAGTTCTGGCTTCAGAACGCTCTCTGAATAAC  150

seq1  AGTTGTAAATTCTATAAAGCAATCCAGTACTGTTAAAAATTTTGGAAAAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTAAATTCTATAAAGCAATCCAGTACTGTTAAAAATTTTGGAAAAC  200

seq1  CTGAATTATATATGTGACCAGTTGCATTAAGAATACTTCATTTCCATCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTATATATGTGACCAGTTGCATTAAGAATACTTCATTTCCATCTG  250

seq1  GTTTTCACTTTCCAGGATATAGATGTTACAGATATTGAGGTTCACTTCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCACTTTCCAGGATATAGATGTTACAGATATTGAGGTTCACTTCCA  300

seq1  CTAATTTAGAGACTTTCATCCATTGCAGTGATGGACATACTGCCCCACAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTAGAGACTTTCATCCATTGCAGTGATGGACATACTGCCCCACAT  350

seq1  TGTGGCCTGTATTAACATGAGTTCCCTTAAATTCCCTTAAATACTTTTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTGTATTAACATGAGTTCCCTTAAATTCCCTTAAATACTTTTTC  400

seq1  TTTCAGAGTGTCATTTTTTAAAATTTATTTATCTTATTTATTTATTTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGTGTCATTTTTTAAAATTTATTTATCTTATTTATTTATTTTTT  450

seq1  AATTATTTTATACACATATCAAATGTTATCCCCTTTCCTAGTTTCCTCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTATACACATATCAAATGTTATCCCCTTTCCTAGTTTCCTCTC  500

seq1  CAAAAATCCCCTATTCCCTCCCAGCTAACCCTCCTCCCCAGTCCACCCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATCCCCTATTCCCTCCCAGCTAACCCTCCTCCCCAGTCCACCCTC  550

seq1  TCCTGCCTCCTGGCCCTGGAATTC  573
      ||||||||||||||||||||||||
seq2  TCCTGCCTCCTGGCCCTGGAATTC  574