BAC Information

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BAC

Clone NameB6Ng01-104E21
Chromosome3 (Build37)
Map Location 23,427,186 - 23,582,995
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040378, LOC623751, LOC100039548
Downstream geneEG635702, EG665189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104E21.bB6Ng01-104E21.g
ACCDH912647DH912648
length1,085983
definitionDH912647|Mus musculus domesticus DNA, BAC clone: B6Ng01-104E21, 5' end.DH912648|Mus musculus domesticus DNA, BAC clone: B6Ng01-104E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,427,186 - 23,428,288)(23,582,011 - 23,582,995)
sequence
gaattcttgtttaccttcctgctagctttgcagttttagagcacatacaa
tttttgttacaaaagtaaaattaattttagaaagtcatacattgaaacaa
taaatatgcttatcttgtttaaattgaccttaaaggatgtcttgattatg
gaaaaatataaaattacaaataaagttgaaatttcttttgtatttttctt
ctacccagaagaaaactactatgagtacatctatctttgtaatccatact
attgcataacatttaatgttatgttctatacacataaccacatgcataca
tatatactacatacatagattaatatatacacaattatatacaaatatat
acatatatatatacatttgcaactacttctgtacatgaaatggatgctgt
aatttttatttctcctagtgtttcatgcaagtctaattcactgaattatt
ccatttatttaatagtcatcttatgtttttttcttgtttctctaaaaatt
ttcccttcttactgtttgtcaggtttgttgtgatcaaaatttatcatctt
ttaaaatattataagcaaattttatgtcttcattgtaaatattcttataa
taattggcacataaaattttatctttgatcaatgttgatgaaatttttat
attttctataaattttatgtgcattttattgttatttcagcatcatcaag
aggctgagggagcaggattgcagttctatgacagtttgggattatccagg
ctctgtatcaaaaaaggggggtgggagaatagaagggaaaagaggagagg
attaagctggattggagaagtgttttgctattccactgttgccaatgtta
ttcctttttaagtttgaaaggactttagtcgaagagatctgtagtccatc
tggaattattatgttttgtttgagtgtgaaaaagtagttcaactgtattt
ttaaatatgggattgccaattcctctaactctgggtttactgactacatc
aagaatttcaattcatcctcaattgggtatcttagagctgttagctcttt
cggcttctcagcacagagtttatgattctcacagg
gaattctttgtttagctctgttccccatttttaatggggttatttagatt
tctggggtccagcttcttgagctttttgtatatattggatattagttccc
tatcagatttaggattggtaaaaatcctttcctaatctgttggtggcctt
attgactcattgacagtgtcttttgccttgaatatgtacatgtattaaag
tagtgcatatccaaacagtataaaacatgataaatgtatggaaagactat
cattattatgatgatcaactgtcctgaaatcattgtagagtgttattgag
tttgaaaatcttaaaaaatgtgttcatttcctcataatccctgatatgta
ttttcccactctataggctgctactgtattttcatgattatttcctgtga
tgtgcagacatttctcactgtgatatgttcccatgtatttgtttgtgcct
ttgtagcctaagcttttgttgtgttatcttaaacaacaagaactcattgc
caaaatcaatgtcagggaacttcttgtagtgtgttatcacaggagtttta
tagattcaggtctcaagtttaagtcttttattcatcttattcatcttgag
tttgatctttctgttttgtaaaaaaaaaaaaaaaaaaaataaggctccaa
gtataaaaacaaaatttatttttagtactctttcttcttttctttttaac
aaattttttatttgatacttttcttcatcttagtatactgtttcttaaag
agatcatcctttcagatgtccttgtttccaacttgaaattagtggatact
cgcatccactttacacatgtggcaatattaacctaaggagattttaactt
ccaaacattataacaaactcatacattaacaagtatttacatggaaattc
tggtcgaaagtcaaaagatgttagcattcacatggtttaggggaacggac
gctttgaactacttggtagaatggagattgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_23427186_23428288
seq2: B6Ng01-104E21.b_41_1125

seq1  GAATTCTTGTTTACCTTCCTGCTAGCTTTGCAGTTTTAGAGCACATACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTTACCTTCCTGCTAGCTTTGCAGTTTTAGAGCACATACAA  50

seq1  TTTTTGTTACAAAAGTAAAATTAATTTTAGAAAGTCATACATTGAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTACAAAAGTAAAATTAATTTTAGAAAGTCATACATTGAAACAA  100

seq1  TAAATATGCTTATCTTGTTTAAATTGACCTTAAAGGATGTCTTGATTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGCTTATCTTGTTTAAATTGACCTTAAAGGATGTCTTGATTATG  150

seq1  GAAAAATATAAAATTACAAATAAAGTTGAAATTTCTTTTGTATTTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATATAAAATTACAAATAAAGTTGAAATTTCTTTTGTATTTTTCTT  200

seq1  CTACCCAGAAGAAAACTACTATGAGTACATCTATCTTTGTAATCCATACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCAGAAGAAAACTACTATGAGTACATCTATCTTTGTAATCCATACT  250

seq1  ATTGCATAACATTTAATGTTATGTTCTATACACATAACCACATGCATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATAACATTTAATGTTATGTTCTATACACATAACCACATGCATACA  300

seq1  TATATACTACATACATAGATTAATATATACACAATTATATACAAATATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACTACATACATAGATTAATATATACACAATTATATACAAATATAT  350

seq1  ACATATATATATACATTTGCAACTACTTCTGTACATGAAATGGATGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATATATACATTTGCAACTACTTCTGTACATGAAATGGATGCTGT  400

seq1  AATTTTTATTTCTCCTAGTGTTTCATGCAAGTCTAATTCACTGAATTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATTTCTCCTAGTGTTTCATGCAAGTCTAATTCACTGAATTATT  450

seq1  CCATTTATTTAATAGTCATCTTATGTTTTTTTCTTGTTTCTCTAAAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTATTTAATAGTCATCTTATGTTTTTTTCTTGTTTCTCTAAAAATT  500

seq1  TTCCCTTCTTACTGTTTGTCAGGTTTGTTGTGATCAAAATTTATCATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTCTTACTGTTTGTCAGGTTTGTTGTGATCAAAATTTATCATCTT  550

seq1  TTAAAATATTATAAGCAAATTTTATGTCTTCATTGTAAATATTCTTATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATTATAAGCAAATTTTATGTCTTCATTGTAAATATTCTTATAA  600

seq1  TAATTGGCACATAAAATTTTATCTTTGATCAATGTTGATGAAATTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGCACATAAAATTTTATCTTTGATCAATGTTGATGAAATTTTTAT  650

seq1  ATTTTCTATAAATTTTATGTGCATTTTATTGTTATTTCAGCATCATCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTATAAATTTTATGTGCATTTTATTGTTATTTCAGCATCATCAAG  700

seq1  AGGCTGAGGGAGCAGGATTGCAGTTCTATGACAGTTTGGGATTATCCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGGGAGCAGGATTGCAGTTCTATGACAGTTTGGGATTATCCAGG  750

seq1  CTCTGTATCAAAAAAGGGGGGGTGGAAGAATAGAAGGAAGAGGAGGAGAG  800
      ||||||||||||||| ||||||||| ||||||||||| | | ||||||||
seq2  CTCTGTATCAAAAAA-GGGGGGTGGGAGAATAGAAGGGAAAAGAGGAGAG  799

seq1  GATAAAGCTGGATTGGAGAAGTGTTTTGCTATTCCACTGTTGCCAATGTT  850
      ||| |||||||||||||||||||||||||||||||||||||||||||| |
seq2  GATTAAGCTGGATTGGAGAAGTGTTTTGCTATTCCACTGTTGCCAATG-T  848

seq1  TATTCTTTTTAAAGTTTGAAAGGTACTTTTAGTCGATGAGATCTGTAGTC  900
      ||||| |||| |||||||||||| || ||||||||| |||||||||||||
seq2  TATTCCTTTTTAAGTTTGAAAGG-AC-TTTAGTCGAAGAGATCTGTAGTC  896

seq1  CATCTGGAATTTATTATGTTTTGTTTGAGGTGTGAAAAAGTAGTCCAACT  950
      ||||||||| |||||||||||||||||| ||||||||||||||| |||||
seq2  CATCTGGAA-TTATTATGTTTTGTTTGA-GTGTGAAAAAGTAGTTCAACT  944

seq1  GTATTTTTTACATAT-GGAGTGCCAATTCCTCTAACTCTGGTTATCACTG  999
      ||| |||||| |||| ||| ||||||||||||||||||||| | | ||||
seq2  GTA-TTTTTAAATATGGGATTGCCAATTCCTCTAACTCTGGGT-TTACTG  992

seq1  ACTACATCAAGATTTTCAATTTCATCCTCATTTGTGTTATCTTTATAGCC  1049
      |||||||||||| |||||| |||||||||| ||| | |||| ||| || |
seq2  ACTACATCAAGAATTTCAA-TTCATCCTCAATTG-GGTATC-TTAGAG-C  1038

seq1  TGTTTAACTCTTTTTGTCTTCTCAGCAAACAAGAGTTTAATGAATACTCA  1099
      || ||| ||| ||| | ||||||||||    ||||||| ||| || ||||
seq2  TG-TTAGCTC-TTTCGGCTTCTCAGCA---CAGAGTTT-ATG-ATTCTCA  1081

seq1  CAGG  1103
      ||||
seq2  CAGG  1085

seq1: chr3_23582011_23582995
seq2: B6Ng01-104E21.g_68_1050 (reverse)

seq1  CATCAATCTACATTTCTACCAAGTATGTTCAAAGCGTCCGTTCCACTAAA  50
      ||||||||| || |||||||||||| |||||||||||||||||| |||||
seq2  CATCAATCTCCA-TTCTACCAAGTA-GTTCAAAGCGTCCGTTCCCCTAAA  48

seq1  CCATAGTGAATGCTAACATCTTTTGAC-TTCGACCAGAATTTCCATGTAA  99
      |||| |||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCAT-GTGAATGCTAACATCTTTTGACTTTCGACCAGAATTTCCATGTAA  97

seq1  CTACTTGTTAATTGTATGAGTTTGTTATAATGTTTGGAAGTTAAAATCTT  149
       |||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  ATACTTGTTAA-TGTATGAGTTTGTTATAATGTTTGGAAGTTAAAATCTC  146

seq1  CTTAGGTTATTATTTGCCACATGTGTAAAGTGGATGCGAGTATCCACTAA  199
      ||||||||| || |||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTTAATA-TTGCCACATGTGTAAAGTGGATGCGAGTATCCACTAA  195

seq1  TTTTCAAGTGGGAAACAAGGACATCTGAAAGGATGATCTCTTTAAGAAAC  249
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  -TTTCAAGTTGGAAACAAGGACATCTGAAAGGATGATCTCTTTAAGAAAC  244

seq1  AGTATACTAAGATGAAG-AAAGTATCAAATAAAAAATTTGTTAAAAAGAA  298
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGTATACTAAGATGAAGAAAAGTATCAAATAAAAAATTTGTTAAAAAGAA  294

seq1  AAGAAGAAAGAGTACT-AAAATAAATTTTGTTTTTATACTTGGAGCCTTA  347
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAGAGTACTAAAAATAAATTTTGTTTTTATACTTGGAGCCTTA  344

seq1  TTTTTTTTTTTTTTTTTTTTACAAAACAGAAAGATC-AACTCAAGATGAA  396
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTACAAAACAGAAAGATCAAACTCAAGATGAA  394

seq1  TAAGATGAATAAAAGACTTAAACTTGAGACCTGAATCTATAAAACTCCTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGAATAAAAGACTTAAACTTGAGACCTGAATCTATAAAACTCCTG  444

seq1  TGATAACACACTACAAGAAGTTCCCTGACATTGATTTTGGCAATGAGTTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACACACTACAAGAAGTTCCCTGACATTGATTTTGGCAATGAGTTC  494

seq1  TTGTTGTTTAAGATAACACAACAAAAGCTTAGGCTACAAAGGCACAAACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTTAAGATAACACAACAAAAGCTTAGGCTACAAAGGCACAAACA  544

seq1  AATACATGGGAACATATCACAGTGAGAAATGTCTGCACATCACAGGAAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATGGGAACATATCACAGTGAGAAATGTCTGCACATCACAGGAAAT  594

seq1  AATCATGAAAATACAGTAGCAGCCTATAGAGTGGGAAAATACATATCAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGAAAATACAGTAGCAGCCTATAGAGTGGGAAAATACATATCAGG  644

seq1  GATTATGAGGAAATGAACACATTTTTTAAGATTTTCAAACTCAATAACAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGAGGAAATGAACACATTTTTTAAGATTTTCAAACTCAATAACAC  694

seq1  TCTACAATGATTTCAGGACAGTTGATCATCATAATAATGATAGTCTTTCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAATGATTTCAGGACAGTTGATCATCATAATAATGATAGTCTTTCC  744

seq1  ATACATTTATCATGTTTTATACTGTTTGGATATGCACTACTTTAATACAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTATCATGTTTTATACTGTTTGGATATGCACTACTTTAATACAT  794

seq1  GTACATATTCAAGGCAAAAGACACTGTCAATGAGTCAATAAGGCCACCAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATATTCAAGGCAAAAGACACTGTCAATGAGTCAATAAGGCCACCAA  844

seq1  CAGATTAGGAAAGGATTTTTACCAATCCTAAATCTGATAGGGAACTAATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTAGGAAAGGATTTTTACCAATCCTAAATCTGATAGGGAACTAATA  894

seq1  TCCAATATATACAAAAAGCTCAAGAAGCTGGACCCCAGAAATCTAAATAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATATATACAAAAAGCTCAAGAAGCTGGACCCCAGAAATCTAAATAA  944

seq1  CCCCATTAAAAATGGGGAACAGAGCTAAACAAAGAATTC  985
      |||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTAAAAATGGGGAACAGAGCTAAACAAAGAATTC  983