BAC Information

Click to search

BAC

Clone NameB6Ng01-104H14
Chromosome3 (Build37)8 (Build37)
Map Location 41,058,921 - 41,059,73744,640,693 - 44,641,842
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104H14.bB6Ng01-104H14.g
ACCDH912763DH912764
length1,0051,136
definitionDH912763|Mus musculus domesticus DNA, BAC clone: B6Ng01-104H14, 5' end.DH912764|Mus musculus domesticus DNA, BAC clone: B6Ng01-104H14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,058,921 - 41,059,737)(44,640,693 - 44,641,842)
sequence
gaattctttgtttagcactgagccccattgttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattaggccct
atctgatttaggataggtaaagatctgttcccaatctgttggtggccttt
ttgtcttattgacagtgtcttttgccttacagaagctttgcaattttatg
aggtcccaattgtctattctccatcttacagcacaagccattgctgttct
attcaggaatttttcccccgtgcccctatcttcgaggcttttccccactt
tctcctctataagtttcactgtctctgcttttatgtggagttccttgatt
cacttaaatttgaccttagtacaaggagataggaatggatcaattcaaat
tcttctacatgataactgccagttgtgccagcaccatttgttgaaaatgc
tgtcttttttccactggatggttttagctcccttgttaaagatcaagtga
ccataggcgtgtgggttcatctctgggtcttcaattctattccattggtc
tacttgtctgtcactataccaataccacaagtttttgtgacaattggtct
gtagtacagcgttaggtcaggcatggtgattccaccagaggattttttat
ccttgagaagagtttttgctatcctaggatttttgttattcctgatgaat
ctgcagattgtcctttctaattcgttgaagaattgagttggaattttgat
ggggattgcattgaatctgtagattgcttttggcaagatagccattttta
ctgtattgatcctgccaatccatgagcatgggagatctttccatcttctg
agatctttaatttctttcttcagagacttgaagttcttttttttttcagt
aattcttataatttattcataagtcattcacaaactgtgagtgtgtggta
aatacataagtacacacatggaggaatacatattcaattataaaagagta
caagg
gaattctatgtgctcatctcaaaatggctttgggcaacacaactgaaagg
gcttgtaagaaacacaaaatccaatggacagattgaaataatgtgactca
ctttcttttaatagaatgtgactattaaaatcatgaagtctcagcaacca
tgtgtacctggacaaaagctgagtagaatcaaaccagccaacatattgcc
attgggtggaagaagggctgttgtgtgatagtttcttctgagatcattag
aggaatgacctttaagatgtaggatgttgaaagggatgtgtaccaccaga
attttctaagagtgagggttgttcagtaacaggatgttgaaaaggaggag
aaaccccaggatgctctaaggggaggtaaactgtgccattcatcagtgca
gctttgtaagcttaggaagtgaaaaactcaataaataaggaaacaactta
atttgactagattcacgaggaccctcctacaggagcatatattagtgtaa
ggactgctgagggatactctcgtagcaactgatttgcctgtgtgctctag
agacaagctgaacttctagaaggagtacatacagtttgagctgcctagaa
gtggctcagatctactctactacctggtcaggatacttttcaaactgttg
aatatatgccatttgtaaagggtactccaggtttcaaggtttcatgaggt
actgctatactgcacaggacttttgttgattgagctcttttgagtcacat
cttatgtctaaagatatacacaacccatattcctataacctcaataaaac
acaattaagggaatgtcagtgctcataatagctcattttttcatatagta
aggacatcatttaagtcactttgccacttattctaaaattagaataagtg
attgtgtatcctgctatgttatgtctagttcattgtttcatttggaaatt
aaaaatgacataaggagatatatttgtatttcaattgatagggaatatgt
gtgatagttatggcaaatttgatctgtaaatgatactggacatgtatctt
ggaatggcttaaaatcaaagtactgatttctatccccttgcatttggctt
agattggttttcttactgttgattttcagagaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41058921_41059737
seq2: B6Ng01-104H14.b_41_855 (reverse)

seq1  GGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAG  50
      ||||||||||| |  |||||||||||||||||||||||||||||||||||
seq2  GGCAGGATCAATACAGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAG  50

seq1  ATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTTG  100
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAG  100

seq1  AAAGAGCAATCTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCA  150
      ||||  ||||||||| ||||||| ||||||||||||| ||||||||||||
seq2  AAAGGACAATCTGCAGATTCATCAGGAATAACAAAAATCCTAGGATAGCA  150

seq1  AAAACTCTTCTCAAGGATAACAGAACCTCTGGTGGAATCACCATGCCTGA  200
      |||||||||||||||||||| | | |||||||||||||||||||||||||
seq2  AAAACTCTTCTCAAGGATAAAAAATCCTCTGGTGGAATCACCATGCCTGA  200

seq1  CCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGT  250
      ||||| ||| ||||||||| ||||||| | |||||||   ||||| ||||
seq2  CCTAACGCTGTACTACAGACCAATTGTCACAAAAACT-TGTGGTATTGGT  249

seq1  ATAGTGACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAACG  300
      ||||||||||||||| ||||||||||||||||||||||||| |||| | |
seq2  ATAGTGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAGATG  299

seq1  AATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCAT  350
      || |||||| |||||||||||||||||||  |||||||||||||||||||
seq2  AACCCACACGCCTATGGTCACTTGATCTTTAACAAGGGAGCTAAAACCAT  349

seq1  CCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGC  399

seq1  TGTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACT  450
       ||||||||||||||||||  ||||||||||| |||||||||||||||||
seq2  AGTTATCATGTAGAAGAATTTGAATTGATCCATTCCTATCTCCTTGTACT  449

seq1  AAGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACT  500
      |||||||||| |||||| |||||||||| |||||||||| |||||||| |
seq2  AAGGTCAAATTTAAGTGAATCAAGGAACTCCACATAAAAGCAGAGACAGT  499

seq1  GAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAG  550
      ||||||||||||||||||||||||||||||||| ||||||| || ||| |
seq2  GAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGATAGGGGCACGG  549

seq1  GGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGA  600
      |||||||||||||| |||||||||||||||||||||||||||||| ||||
seq2  GGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATGGAGA  599

seq1  ATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGA  650
      |||||||| ||||||||||| ||| ||||||||||||| |||||||||||
seq2  ATAGACAATTGGGACCTCATAAAATTGCAAAGCTTCTGTAAGGCAAAAGA  649

seq1  CACCGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTA  699
      ||| |||||||||||||||||| |||||||||||||||||  ||||||||
seq2  CACTGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAACAGATCTTTA  699

seq1  CCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTC  749
      |||||||||||||||||| ||| |||||||||||||||||| ||||||||
seq2  CCTATCCTAAATCAGATA-GGGCCTAATATCCAATATATATAAAGAACTC  748

seq1  AAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTC  799
      ||||||||||| |||||||||||||||||||||||| || ||||||||||
seq2  AAGAAGGTGGACTCCAGAAAATCAAATAACCCCATT-AACAATGGGGCTC  797

seq1  AGAGCTAAACAAAGAATT  817
      || |||||||||||||||
seq2  AGTGCTAAACAAAGAATT  815

seq1: chr8_44640693_44641842
seq2: B6Ng01-104H14.g_67_1202

seq1  GAATTCTATGTGCTCATCTCAAAATGGCTTTGGGCAACACAACTGAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTGCTCATCTCAAAATGGCTTTGGGCAACACAACTGAAAGG  50

seq1  GCTTGTAAGAAACACAAAATCCAATGGACAGATTGAAATAATGTGACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTAAGAAACACAAAATCCAATGGACAGATTGAAATAATGTGACTCA  100

seq1  CTTTCTTTTAATAGAATGTGACTATTAAAATCATGAAGTCTCAGCAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTAATAGAATGTGACTATTAAAATCATGAAGTCTCAGCAACCA  150

seq1  TGTGTACCTGGACAAAAGCTGAGTAGAATCAAACCAGCCAACATATTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACCTGGACAAAAGCTGAGTAGAATCAAACCAGCCAACATATTGCC  200

seq1  ATTGGGTGGAAGAAGGGCTGTTGTGTGATAGTTTCTTCTGAGATCATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTGGAAGAAGGGCTGTTGTGTGATAGTTTCTTCTGAGATCATTAG  250

seq1  AGGAATGACCTTTAAGATGTAGGATGTTGAAAGGGATGTGTACCACCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGACCTTTAAGATGTAGGATGTTGAAAGGGATGTGTACCACCAGA  300

seq1  ATTTTCTAAGAGTGAGGGTTGTTCAGTAACAGGATGTTGAAAAGGAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTAAGAGTGAGGGTTGTTCAGTAACAGGATGTTGAAAAGGAGGAG  350

seq1  AAACCCCAGGATGCTCTAAGGGGAGGTAAACTGTGCCATTCATCAGTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCAGGATGCTCTAAGGGGAGGTAAACTGTGCCATTCATCAGTGCA  400

seq1  GCTTTGTAAGCTTAGGAAGTGAAAAACTCAATAAATAAGGAAACAACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTAAGCTTAGGAAGTGAAAAACTCAATAAATAAGGAAACAACTTA  450

seq1  ATTTGACTAGATTCACGAGGACCCTCCTACAGGAGCATATATTAGTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACTAGATTCACGAGGACCCTCCTACAGGAGCATATATTAGTGTAA  500

seq1  GGACTGCTGAGGGATACTCTCGTAGCAACTGATTTGCCTGTGTGCTCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCTGAGGGATACTCTCGTAGCAACTGATTTGCCTGTGTGCTCTAG  550

seq1  AGACAAGCTGAACTTCTAGAAGGAGTACATACAGTTTGAGCTGCCTAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGCTGAACTTCTAGAAGGAGTACATACAGTTTGAGCTGCCTAGAA  600

seq1  GTGGCTCAGATCTACTCTACTACCTGGTCAGGATACTTTTCAAACTGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCAGATCTACTCTACTACCTGGTCAGGATACTTTTCAAACTGTTG  650

seq1  AATATATGCCATTTGTAAAGGGTACTCCAGGTTTCAAGGTTTCATGAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGCCATTTGTAAAGGGTACTCCAGGTTTCAAGGTTTCATGAGGT  700

seq1  ACTGCTATACTGCACAGGACTTTTGTTGATTGAGCTCTTTTGAGTCACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTATACTGCACAGGACTTTTGTTGATTGAGCTCTTTTGAGTCACAT  750

seq1  CTTATGTCTAAAGATATACACAACCCATATTCCTATAACCTCAATAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTCTAAAGATATACACAACCCATATTCCTATAACCTCAATAAAAC  800

seq1  ACAATTAAGGGAATGTCAGTGCTCATAATAGCTCA-TTTTTCATATAGTA  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACAATTAAGGGAATGTCAGTGCTCATAATAGCTCATTTTTTCATATAGTA  850

seq1  AGGACATCATTTAAGTCACCTTGCCACTTATTCTAAAATTAGAATAAGTG  899
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGGACATCATTTAAGTCACTTTGCCACTTATTCTAAAATTAGAATAAGTG  900

seq1  ATTGTTGTATCCTGCTATGTTATGTCTAGTTCATTGTTTCATTTGGAAAT  949
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTG-TGTATCCTGCTATGTTATGTCTAGTTCATTGTTTCATTTGGAAAT  949

seq1  TAAAAATGACATAAGGAGATATATTTGTATTTCAATTGATAAGGGAATAT  999
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAAAAATGACATAAGGAGATATATTTGTATTTCAATTGAT-AGGGAATAT  998

seq1  GTGTGATAGTTATGGCCAAATTTGATCTGTAAAATGAATAACTGGACAAT  1049
      ||||||||||||||| |||||||||||||| ||||||   ||||||| ||
seq2  GTGTGATAGTTATGG-CAAATTTGATCTGT-AAATGA--TACTGGAC-AT  1043

seq1  GTATCTT-GAATGGCATAAAAATCAAAGTTACTGATTTCTATTTCCCCTG  1098
      ||||||| ||||||| | |||||||||| ||||||||||||  |||||| 
seq2  GTATCTTGGAATGGC-TTAAAATCAAAG-TACTGATTTCTA--TCCCCT-  1088

seq1  GGCATTTTGCTTTAGTATGTGTTTCTTACTGTTTGACTTTTTCAGAGAAA  1148
       |||||| || ||||  ||  |||||||||| ||||  ||||||||||||
seq2  TGCATTTGGC-TTAGATTGGTTTTCTTACTG-TTGA--TTTTCAGAGAAA  1134

seq1  GA  1150
      ||
seq2  GA  1136