BAC Information

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BAC

Clone NameB6Ng01-104I06
Chromosome3 (Build37)
Map Location 72,652,885 - 72,654,126
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3, Bche
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104I06.bB6Ng01-104I06.g
ACCDH912792DH912793
length1,2331,263
definitionDH912792|Mus musculus domesticus DNA, BAC clone: B6Ng01-104I06, 5' end.DH912793|Mus musculus domesticus DNA, BAC clone: B6Ng01-104I06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtaagtaaggtttatcatgatctcagtttcatttcctggtttc
tgattacactgttgaacttcagttttgccctatcttggtgatacattgta
attgggaatccaataaaaacctttactttcaaagttgcttataataaatg
ctatatttcagcaaaagaaagtaactgaaacagcgtggttattgggaagg
tgaatctattttcactgtttttggatcgtagtatcaaaattagagttaat
ttttgtaattgaaaaagaatatgaatttttaactacctatacactgttaa
gtatttcttgattaaacaaaaaaattcaagaatttatgtattcattttat
tcacatccatatgatttacaaaaacaagtatctgcagaaaatcctgacaa
aattaaatggatagagtttataaattagccctcgccgtgcaataatactc
ataagaagtagtatgttttcagacttcaagtttatactttttatcaaata
ttttaggtgacaagtatttagaatggcttactgtgtggtaaatatatttt
ttaagctgtatgaattttgttacataataaacgtacccaataatagttgt
cacagcatacttaataaattggtcgtttaatgtattataaccattactta
cttaactggcaatggctcttatgactgctattaagtctcattgccaagaa
accaagcaatgactagcaagcatacttatgtcagattgtactttgtccca
aatataatacatagaagtacatgcatacacagaaatacacatagaagcct
gtaacacaacacaaacatcaccgagataaacacataaaaaaattcataca
tccacaacagacacatgcaattagagaaacacaaacacacatacacacac
acacatgagacatgtaaattgtcttgttctatgtattttattcttcttca
aaagaaattatttctgctttctctggccatgaacctgtactgtttttatt
gttattgctgcttttaaactataaacacctaattaaactatgaaacctct
atatgaactactaagattatatttttattataatttaataatttattaaa
taattttaaaggccataactaatttttgttaataagcattttgcatgctg
taggttcacattctggagagaatattcccttaatattcgattttattcag
accaactcgaatagtcgatctttcatctttaaa
gaattcttgctgttgtacattttaaaaccatagaaagtgaagatgtttta
ttctctttaagcctgaggagtgactatatctttctcaggtacctttgggt
gttacagcagaagcagaggaaactaaatttgactgcaggaaggtatgacc
aaagaactggttcactggtgaattaaaagatatggccggtttagtctaga
agggaggacatatgattatggccattccattacaagttttacacacggaa
atgaatgctgaagaagagaaaactgagtcctaaatttaaataaaacatat
acctgtgcctgcctttgcctgatctgaccaagtaagtttttccaaaggag
actgtaactacttatatcagctacaccccagttacatatgcagttattta
cacatatgtattgcaggtgatttaaaaggaacactcaatcataatgaata
aacatgggaaacatgtctttgtgctttgaagccaggtgtgttggggacat
ccttaattccaagcactttattggaggattggaaaacagagcttgtctta
tctacagagtgaattggaagttatattgggctgtatgagataatgtctca
aaacaaaattaactacactgaacaaacaaaaacatctgcctctttactaa
agggacataatccctaaataaatgtttgtccttgtacacatagataaatg
tagtcctcactcttgatcgtgaagctttctcttcacaatagacaccatta
aagaaaatcacaaccaaccaaaacagaaagtttgtagagctcatcccaac
tgatacatctactcttaacttctacatgtaaagtgcagggttcattatgg
acatggagcagaaagattctaaaaatcagaggattgagttgctgtgagac
tgtgtcacctagtaatatcagaatacaccactcatgcagtctcatcacac
aactgaccaaacatgaactgaacaaaaacagtaacaatacatgtgctaag
tgaaaggtaaagcctcagatgtattatcccttcacaagactacagacagg
aaaaatattggatgctaaaggagaatgatagttttcctgtaggaagaata
atccatttggtacacgatttctattttttccaaccttgaaaccttataat
tcaggacttaccagactatgcaggtgttatttatttatggattatccatt
atcttccattgataaacgtgctatggtgtgttcacacaattaatgggaag
aagaagaacagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_72652885_72654126
seq2: B6Ng01-104I06.b_46_1278

seq1  GAATTCAGTAAGTAAGGTTTATCATGATCTCAGTTTCATTTCCTGGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAGTAAGGTTTATCATGATCTCAGTTTCATTTCCTGGTTTC  50

seq1  TGATTACACTGTTGAACTTCAGTTTTGCCCTATCTTGGTGATACATTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACACTGTTGAACTTCAGTTTTGCCCTATCTTGGTGATACATTGTA  100

seq1  ATTGGGAATCCAATAAAAACCTTTACTTTCAAAGTTGCTTATAATAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGAATCCAATAAAAACCTTTACTTTCAAAGTTGCTTATAATAAATG  150

seq1  CTATATTTCAGCAAAAGAAAGTAACTGAAACAGCGTGGTTATTGGGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTTCAGCAAAAGAAAGTAACTGAAACAGCGTGGTTATTGGGAAGG  200

seq1  TGAATCTATTTTCACTGTTTTTGGATCGTAGTATCAAAATTAGAGTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTATTTTCACTGTTTTTGGATCGTAGTATCAAAATTAGAGTTAAT  250

seq1  TTTTGTAATTGAAAAAGAATATGAATTTTTAACTACCTATACACTGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAATTGAAAAAGAATATGAATTTTTAACTACCTATACACTGTTAA  300

seq1  GTATTTCTTGATTAAACAAAAAAATTCAAGAATTTATGTATTCATTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCTTGATTAAACAAAAAAATTCAAGAATTTATGTATTCATTTTAT  350

seq1  TCACATCCATATGATTTACAAAAACAAGTATCTGCAGAAAATCCTGACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCCATATGATTTACAAAAACAAGTATCTGCAGAAAATCCTGACAA  400

seq1  AATTAAATGGATAGAGTTTATAAATTAGCCCTCGCCGTGCAATAATACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATGGATAGAGTTTATAAATTAGCCCTCGCCGTGCAATAATACTC  450

seq1  ATAAGAAGTAGTATGTTTTCAGACTTCAAGTTTATACTTTTTATCAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAGTAGTATGTTTTCAGACTTCAAGTTTATACTTTTTATCAAATA  500

seq1  TTTTAGGTGACAAGTATTTAGAATGGCTTACTGTGTGGTAAATATATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGTGACAAGTATTTAGAATGGCTTACTGTGTGGTAAATATATTTT  550

seq1  TTAAGCTGTATGAATTTTGTTACATAATAAACGTACCCAATAATAGTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTGTATGAATTTTGTTACATAATAAACGTACCCAATAATAGTTGT  600

seq1  CACAGCATACTTAATAAATTGGTCGTTTAATGTATTATAACCATTACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATACTTAATAAATTGGTCGTTTAATGTATTATAACCATTACTTA  650

seq1  CTTAACTGGCAATGGCTCTTATGACTGCTATTAAGTCTCATTGCCAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTGGCAATGGCTCTTATGACTGCTATTAAGTCTCATTGCCAAGAA  700

seq1  ACCAAGCAATGACTAGCAAGCATACTTATGTCAGATTGTACTTTGTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCAATGACTAGCAAGCATACTTATGTCAGATTGTACTTTGTCCCA  750

seq1  AATATAATACATAGAAGTACATGCATACACAGAAATACACATAGAAGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATACATAGAAGTACATGCATACACAGAAATACACATAGAAGCCT  800

seq1  GTAACACAACACAAACATCACCGAGATAAACACATAAAAAAATTCATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACACAACACAAACATCACCGAGATAAACACATAAAAAAATTCATACA  850

seq1  TCCACAACAGACACATGCAATTAGAGAAACACAAACACACATACACACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAACAGACACATGCAATTAGAGAAACACAAACACACATACACACAC  900

seq1  ACACATGAGACATGTAAATTGTCTTGTTCTATGTATTTTATTCTCCTTCA  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACACATGAGACATGTAAATTGTCTTGTTCTATGTATTTTATTCTTCTTCA  950

seq1  AAAGAAATTATTTCTTGCTTCTCTGGCCATGAACCTGTACTGTTTTTATT  1000
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  AAAGAAATTATTTCTGCTTTCTCTGGCCATGAACCTGTACTGTTTTTATT  1000

seq1  GTTATTGCTGCTTTTAAACTAT-AACACCTAATTAAACTATGAAA-CTCT  1048
      |||||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  GTTATTGCTGCTTTTAAACTATAAACACCTAATTAAACTATGAAACCTCT  1050

seq1  ATATGAAACTACTAAGATTATA-TTTTATTATAATTTAATAATTTTATTA  1097
      ||||| |||||||||||||||| ||||||||||||||||||||||  | |
seq2  ATATG-AACTACTAAGATTATATTTTTATTATAATTTAATAATTTATTAA  1099

seq1  ATAA-TTTAAAGCCCATTAAATTAATATTTGTTAATATAGCATTTTGCAT  1146
      |||| ||||||| ||||  || |||| |||||||||| ||||||||||||
seq2  ATAATTTTAAAGGCCAT--AACTAATTTTTGTTAATA-AGCATTTTGCAT  1146

seq1  GCTGTA-GTTCACATTCTGAGAAGATAATCCCCTTATTAATTTCGTATTT  1195
      |||||| ||||||||||||   |||  || |||||| ||  ||||  |||
seq2  GCTGTAGGTTCACATTCTGGAGAGAATATTCCCTTAATA--TTCGATTTT  1194

seq1  ATATGGAAGTATTTAATTAGAAATTAGTAGTATCTTTCATCTTTAAA  1242
      ||   ||       || | |||  |||| | ||||||||||||||||
seq2  ATTCAGA-----CCAACTCGAA--TAGTCG-ATCTTTCATCTTTAAA  1233