BAC Information

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BAC

Clone NameB6Ng01-104J14
Chromosome3 (Build37)
Map Location 76,670,706 - 76,808,290
singlet/doubletdoublet
Overlap geneLOC100041625, LOC100041635
Upstream geneGolph4, Fstl5
Downstream geneDnmt3a-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104J14.bB6Ng01-104J14.g
ACCDH912848DH912849
length1,1671,068
definitionDH912848|Mus musculus domesticus DNA, BAC clone: B6Ng01-104J14, 5' end.DH912849|Mus musculus domesticus DNA, BAC clone: B6Ng01-104J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,670,706 - 76,671,893)(76,807,386 - 76,808,290)
sequence
gaattctttcataaatgtcttttcttttttcatgtgtacactcaactaga
tgacagccatttatgcacgatgtaggtaaacctgagggacattaacagct
cagtgagcttttcctgactcttcagctgcccaatgtggaattgaatttct
gttgtttacaagtcacacagtttgtaaattgtgctgtaccactgacagcc
gattcctcattatttgaaagtagtgtttcactttaagcctcaatttcctt
gtttacttagaaaagtagggaaatatttccaaattaacagaaatatgaat
gtatgagtttaagtaaaattccttgaaatcaatgaatgcatactaaatgc
ttatagtatcaataaaatagcccatgctaggcaaattgctgagctataac
aaaggcctcttaattttcttctttctttatttttttaagacaacctcaag
ttaattgtgcatgtttctttcaatgttataagtatgaaactcatgttaag
tgatgaatatcacagcacttcaaatcctttttacttgcttgaaaggctaa
caaaggctccagtgaaattactatggtaggaggcacttgaggcttctcac
ctgtgaaagacaaagagcacaagtatttgaagttacctagagaccattat
aaaggattcatttgcaaataaactgataagaggcaagttttaaactacag
aaaaaatatccaatcttggccttttcttcctctattgctataacaattga
tagatatattttggagaagccatagttctgtgaggataatggacacgtac
taaatcttatatctcaataaatgctttagagttgcttaaagtgaaaattc
taaaagaaatttggaatagttttgccagtaaaaggtgtattgtctgcagt
cattctggtaaactcttaatagaattgcaggcatctagaaacagacactt
cccttcccttgctgctgcacactgtgttgattcaggctcttcttcttaac
cccatctctgtatatttgtctctgttcatcctctgttccgccctcgtgat
cttctcaaactaattgtgtcgactccccccgtcttcagtgctgtcatgca
taaccacctcctgcatggtgtacgagattagtactttaataattatgaat
atgatcttacaatcttc
gaattccaatgtaaggaaatgaaaaacttagaatagttctagaagtcaac
atgtgaatctaatatctatgaccacaattttatataaggaataaaagaaa
aaacgataacttggacaataaaatttaaaattcagatttttcaaaattca
aagttaataaaatagaatacaaagtagatacaaagtagaaaaaataatct
caaagtccatatctaacaaggggtttttagttaaaaatatgtgtaaaagt
aacttttttccatatgtaattgtcatctcagaggcttactgctaaatatg
ctcaccctttctagctctttccaaactctggctgtttggttcaactcagc
tcttctagatcagacctctatttaagctaactaattcagtctggctactc
ttggctgctcactgaaggccaagcagagtcatttcgcaaactaattttac
ctatattttttggaatgaaacttgtgtacttagggcatgtctgtattcca
gccagatcatactgtagcccagagcacatcagccagatcatatagaacta
aaaagtctttcggtgtgtgatcccttgttggaggagccttgttagattaa
aattccaccacaatatggaacaaactttcagaatttcagataaaatagca
aataagctaactgaaaaataggatgagcaagttgtttctcgtcacatttc
cacaaaagtaagggagggtggtagatgagacagtactcaaatgtcattat
ttaacttcatccacagtgaccagctgatacattccaattaggatatagtg
aaacaggaaagattcacccacctagatactggctagacttggcgatatga
acaactgttatatgtgttccctagcatgtaaagctacaatcagtttttaa
agtttcttggtaaaaaattcttacatgcagtaaatgacactcaaagcatg
taatctttcttcaactgaggataacgaagaggtaggcaaacatgaaaaat
ctttgtggaataatgaacatttttagacatttcatttaggcatcgtgtta
ggcacagtgtcaaggtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_76670706_76671893
seq2: B6Ng01-104J14.b_43_1209

seq1  GAATTCTTTCATAAATGTCTTTTCTTTTTTCATGTGTACACTCAACTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATAAATGTCTTTTCTTTTTTCATGTGTACACTCAACTAGA  50

seq1  TGACAGCCATTTATGCACGATGTAGGTAAACCTGAGGGACATTAACAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCCATTTATGCACGATGTAGGTAAACCTGAGGGACATTAACAGCT  100

seq1  CAGTGAGCTTTTCCTGACTCTTCAGCTGCCCAATGTGGAATTGAATTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGCTTTTCCTGACTCTTCAGCTGCCCAATGTGGAATTGAATTTCT  150

seq1  GTTGTTTACAAGTCACACAGTTTGTAAATTGTGCTGTACCACTGACAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTACAAGTCACACAGTTTGTAAATTGTGCTGTACCACTGACAGCC  200

seq1  GATTCCTCATTATTTGAAAGTAGTGTTTCACTTTAAGCCTCAATTTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTCATTATTTGAAAGTAGTGTTTCACTTTAAGCCTCAATTTCCTT  250

seq1  GTTTACTTAGAAAAGTAGGGAAATATTTCCAAATTAACAGAAATATGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTTAGAAAAGTAGGGAAATATTTCCAAATTAACAGAAATATGAAT  300

seq1  GTATGAGTTTAAGTAAAATTCCTTGAAATCAATGAATGCATACTAAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGTTTAAGTAAAATTCCTTGAAATCAATGAATGCATACTAAATGC  350

seq1  TTATAGTATCAATAAAATAGCCCATGCTAGGCAAATTGCTGAGCTATAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTATCAATAAAATAGCCCATGCTAGGCAAATTGCTGAGCTATAAC  400

seq1  AAAGGCCTCTTAATTTTCTTCTTTCTTTATTTTTTTAAGACAACCTCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCTCTTAATTTTCTTCTTTCTTTATTTTTTTAAGACAACCTCAAG  450

seq1  TTAATTGTGCATGTTTCTTTCAATGTTATAAGTATGAAACTCATGTTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTGCATGTTTCTTTCAATGTTATAAGTATGAAACTCATGTTAAG  500

seq1  TGATGAATATCACAGCACTTCAAATCCTTTTTACTTGCTTGAAAGGCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAATATCACAGCACTTCAAATCCTTTTTACTTGCTTGAAAGGCTAA  550

seq1  CAAAGGCTCCAGTGAAATTACTATGGTAGGAGGCACTTGAGGCTTCTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCTCCAGTGAAATTACTATGGTAGGAGGCACTTGAGGCTTCTCAC  600

seq1  CTGTGAAAGACAAAGAGCACAAGTATTTGAAGTTACCTAGAGACCATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAAGACAAAGAGCACAAGTATTTGAAGTTACCTAGAGACCATTAT  650

seq1  AAAGGATTCATTTGCAAATAAACTGATAAGAGGCAAGTTTTAAACTACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATTCATTTGCAAATAAACTGATAAGAGGCAAGTTTTAAACTACAG  700

seq1  AAAAAATATCCAATCTTGGCCTTTTCTTCCTCTATTGCTATAACAATTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATATCCAATCTTGGCCTTTTCTTCCTCTATTGCTATAACAATTGA  750

seq1  TAGATATATTTTGGAGAAGCCATAGTTCTGTGAGGATAATGGACACGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATATTTTGGAGAAGCCATAGTTCTGTGAGGATAATGGACACGTAC  800

seq1  TAAATCTTATATCTCAATAAATGCTTTAGAGTTGCTTAAAGTGAAAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTATATCTCAATAAATGCTTTAGAGTTGCTTAAAGTGAAAATTC  850

seq1  TAAAAGAAATTTGGAATAGTTTTGCCAGTAAAAGGTGTATTGTCTGCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAATTTGGAATAGTTTTGCCAGTAAAAGGTGTATTGTCTGCAGT  900

seq1  CATTCTGGTAAACTCTTAATAGAATTGCAGGCATCTTAGAAACAGACACT  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CATTCTGGTAAACTCTTAATAGAATTGCAGGCATC-TAGAAACAGACACT  949

seq1  TCCCTTCCCTTGCTGCTGCACACTGTGTTTGATTCCAGGCTCTTCCTTCT  1000
      ||||||||||||||||||||||||||| |||||| ||||||||| |||||
seq2  TCCCTTCCCTTGCTGCTGCACACTGTG-TTGATT-CAGGCTCTT-CTTCT  996

seq1  TAACCCCATCTCTGTATATTTGTTCTCTGTTCATCCTTCTGTTCCGCCCT  1050
      |||||||||||||||||||||| ||||||||||||| |||||||||||||
seq2  TAACCCCATCTCTGTATATTTG-TCTCTGTTCATCC-TCTGTTCCGCCCT  1044

seq1  CGTGATCTTTCTCAAACTAATTTGTGTCGACTCCCACCCGTCCTCCAGTG  1100
      ||||||| |||||||||||| |||||||||||||| ||||| || |||||
seq2  CGTGATC-TTCTCAAACTAA-TTGTGTCGACTCCC-CCCGT-CTTCAGTG  1090

seq1  CTTGTCATGCATTAACACCTCCTGCAT-GTGTACGAGGATTTAGTAACTT  1149
      | |||||||||| | |||||||||||| |||||||||   ||||| ||||
seq2  C-TGTCATGCATAACCACCTCCTGCATGGTGTACGAG--ATTAGT-ACTT  1136

seq1  TAAATAATTAAAGGAATAATGATCTACACAAAAATCTTC  1188
      | |||||||  | |||| |||||||     | |||||||
seq2  T-AATAATT--ATGAAT-ATGATCT----TACAATCTTC  1167

seq1: chr3_76807386_76808290
seq2: B6Ng01-104J14.g_237_1135 (reverse)

seq1  ATACCTTGGCACTTGTTGCCTGTACACTGATGCTTAAATGGAAATGTCAT  50
      |||||||| ||||   |||||  |||| ||||| ||||| |||||||| |
seq2  ATACCTTGACACT--GTGCCT-AACAC-GATGCCTAAAT-GAAATGTC-T  44

seq1  AAACATGTTCATTATTCCACAAAGATTTTTCATGTTTGCCTACCTCTTCG  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTTCATTATTCCACAAAGATTTTTCATGTTTGCCTACCTCTTCG  94

seq1  TTAATCCTCAGTTGAAG-AAGATTACATGCTTTGAGTGTCATTTACTGCA  149
      || |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TT-ATCCTCAGTTGAAGAAAGATTACATGCTTTGAGTGTCATTTACTGCA  143

seq1  TGT-AGAATTTTTTACCAAGATACTTTAAAAACTGATTGTAAGCTTTACA  198
      ||| ||||||||||||||||| |||||||||||||||||| |||||||||
seq2  TGTAAGAATTTTTTACCAAGAAACTTTAAAAACTGATTGT-AGCTTTACA  192

seq1  TGCTAGGGAACACATATAACAGTTGTTCATATCGCCAAGTCTAGCCAGTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGGAACACATATAACAGTTGTTCATATCGCCAAGTCTAGCCAGTA  242

seq1  TCTAGGTGGGTGAATCTTTCCTGTTTCACTATATCCTAATTGGAATGTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTGGGTGAATCTTTCCTGTTTCACTATATCCTAATTGGAATGTAT  292

seq1  CAGCTGGTCACTGTGGATGAAGTTAAATAATGACATTTGAGTACTGTCTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGTCACTGTGGATGAAGTTAAATAATGACATTTGAGTACTGTCTC  342

seq1  ATCTACCACCCTCCCTTACTTTTGTGGAAATGTGACGAGAAACAACTTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCACCCTCCCTTACTTTTGTGGAAATGTGACGAGAAACAACTTGC  392

seq1  TCATCCTATTTTTCAGTTAGCTTATTTGCTATTTTATCTGAAATTCTGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTATTTTTCAGTTAGCTTATTTGCTATTTTATCTGAAATTCTGAA  442

seq1  AGTTTGTTCCATATTGTGGTGGAATTTTAATCTAACAAGGCTCCTCCAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTCCATATTGTGGTGGAATTTTAATCTAACAAGGCTCCTCCAAC  492

seq1  AAGGGATCACACACCGAAAGACTTTTTAGTTCTATATGATCTGGCTGATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATCACACACCGAAAGACTTTTTAGTTCTATATGATCTGGCTGATG  542

seq1  TGCTCTGGGCTACAGTATGATCTGGCTGGAATACAGACATGCCCTAAGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGGGCTACAGTATGATCTGGCTGGAATACAGACATGCCCTAAGTA  592

seq1  CACAAGTTTCATTCCAAAAAATATAGGTAAAATTAGTTTGCGAAATGACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTTTCATTCCAAAAAATATAGGTAAAATTAGTTTGCGAAATGACT  642

seq1  CTGCTTGGCCTTCAGTGAGCAGCCAAGAGTAGCCAGACTGAATTAGTTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGGCCTTCAGTGAGCAGCCAAGAGTAGCCAGACTGAATTAGTTAG  692

seq1  CTTAAATAGAGGTCTGATCTAGAAGAGCTGAGTTGAACCAAACAGCCAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATAGAGGTCTGATCTAGAAGAGCTGAGTTGAACCAAACAGCCAGA  742

seq1  GTTTGGAAAGAGCTAGAAAGGGTGAGCATATTTAGCAGTAAGCCTCTGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAAAGAGCTAGAAAGGGTGAGCATATTTAGCAGTAAGCCTCTGAG  792

seq1  ATGACAATTACATATGGAAAAAAGTTACTTTTACACATATTTTTAACTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAATTACATATGGAAAAAAGTTACTTTTACACATATTTTTAACTAA  842

seq1  AAACCCCTTGTTAGATATGGACTTTGAGATTATTTTTTCTACTTTGTATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCTTGTTAGATATGGACTTTGAGATTATTTTTTCTACTTTGTATC  892

seq1  TACTTTG  905
      |||||||
seq2  TACTTTG  899