BAC Information

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BAC

Clone NameB6Ng01-105A08
Chromosome3 (Build37)
Map Location 118,717,881 - 118,860,579
singlet/doubletdoublet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105A08.bB6Ng01-105A08.g
ACCDH913154DH913155
length1,1761,082
definitionDH913154|Mus musculus domesticus DNA, BAC clone: B6Ng01-105A08, 5' end.DH913155|Mus musculus domesticus DNA, BAC clone: B6Ng01-105A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,859,387 - 118,860,579)(118,717,881 - 118,718,494)
sequence
gaattcttgaagtcaatctctggcctccacatgagcctgcacaagtgacc
cccacgcatacatatgaacacacacagacatactcattccaaacccaaat
gattagtgtccaatttccaaagaggtgtgtaaagtagaaatcatttgcaa
acaggagcggagcatcgttgtcgaagtttacagaagaaccctgactgcag
aaccagctttctcattcaggggatctcttgaactcacgctctactgtgct
accatctgtggcacactgaagaatgccgatgccctagctatcacattggc
ttactactttcaatttaatgtgtccttcactgttgcagacatcttcacag
acattgattggttctgccctttcttttttctccaggggagctggaagtat
gctacccatgggaggaaatcatgagcgtgttactgtatcggaagcggaag
ctgagcccacgatgaaaatgctctagatctcacagtagattttgctttgc
atgggaattggcaaaaataaaacattttgttctcaaggcaagtgcaaaaa
tgctattaaagaaaccaaggtttgcctttatccaaacttggataattgga
aagagtcaggtctcaagattcgaaatgtcaagcaatgcaaagcaaaacaa
cccaaaatataaacaaacaaactctgataaatgaagggactattacatag
aaacttgagagacgtgaaggagagaagagaggtcaaaagtacaagactag
ttagtgcaatgatagcgtgctcatgaaagaagctaagaaactgagccagg
cctgggattgtaatgtaggtaatcccacaagttggaaggcagagcaagga
gagtcacaagttcaagtcctgtctgggctacaaagagagttcaagctcag
ctaggtgatttgtatagaccctgtctccaaattaaaggagaaatggagat
aaagcttggtggtaggatgctgactatgcattctgaagtactggattcta
tcagtcgtcttcactcaccctaccctgcaaaaaatagcaaagaagagagt
ggggctgaaatgtgacttggtgatatcattcttttagagaacaagactca
atactggcacccacatcatggagctacaatgcgaataacccatccccaga
tctacagtccttctgcctactggagg
gaattcccaataaaatatattcctaggtattaggcacagctacttaagaa
tgggaatggtctgaggattatgagtgagtccataggagggagaaaagcag
tcttctaccaagacctgcttaatctcctggaatggagaaagagaacaagg
aaaggtcacagcaagaaaaaacagaaaatgagcctgcagaatttgatgtg
gcagagagaggagagagtaaaggtcagatttgcctacctgttttgctggt
ttactttcttctctgactgggatgtttctagggaacacctgctgtagtcg
gggactggaaaatcattttggctgggaaggaaggttagaggagaagtttt
gcatggttcactggagatggggaaacagaggtggggtcacagcaggtggt
ttgcaactgaattggaggtgaaactgggcgaattatttttgagaagaagg
agagaattacctcaagaatgaggttatctgctttctaggagtgtccttag
gtttctagggaatgcctgttgtatttgggggctcccataaagcaatttgt
aggcagggagttgagaggagaatttggagtgaagatctatatgatccact
ggtggtggggcagggcaggggtgagtagcagccagtggtctactataaac
ttggggatgaggctaaggagatttggagaagagacataagaggtgaaaat
gtggagttaggctgccttcttcatgggctggaagaacccacatttcctgt
atgcttctacagaatgcctgctggagttgtgggctgggataatggaataa
attaggagaagtttggagagaagatctttgtgatcctctggaattaggga
agaaagggaggccacagccatggtcttgctacagagctgaggatgagact
ggaaggttggattaggagaaaagaaaggaagataagatcctgcagtaggc
tacttgcttttcttggctaagttcatgcatttttttttaatacttcattc
aattttaggctagtgtactataaagatgacgaatcagttcccatataatt
cagcttcacctttttctatttacgcatgattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118859387_118860579
seq2: B6Ng01-105A08.b_48_1223 (reverse)

seq1  CCTCCAGTAGGCAGAAGGGACTGTTAGATTCCTTGGAGATGGAGTTATTC  50
      |||||||||||||||| |||||| |||||    ||| ||||| |||||||
seq2  CCTCCAGTAGGCAGAA-GGACTG-TAGAT---CTGGGGATGG-GTTATTC  44

seq1  GCATTTGTAAGCTCCATGATGTGGGTGCCAGTATTTGAGTTCTTGTTCTC  100
      ||| |||| |||||||||||||||||||||||| ||||| ||||||||||
seq2  GCA-TTGT-AGCTCCATGATGTGGGTGCCAGTA-TTGAG-TCTTGTTCTC  90

seq1  TGAGAGAATGATTAATCACCAAGTCACATCTCCAGCCCCACTTCTCTTCT  150
      | | ||||||||  ||||||||||||||| | ||||||||| ||||||| 
seq2  TAAAAGAATGAT--ATCACCAAGTCACAT-TTCAGCCCCAC-TCTCTTC-  135

seq1  TTTGCTATTTTTTGCAGGGTAGGGTGAGTGAAGACGACTGATAGAATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATTTTTTGCAGGGTAGGGTGAGTGAAGACGACTGATAGAATCCA  185

seq1  GTACCTTCAGAATGCATAGTCAGCATCCTACCACCAAGCTTTATCTCCAT  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTA-CTTCAGAATGCATAGTCAGCATCCTACCACCAAGCTTTATCTCCAT  234

seq1  TTCTCCTTTAATTTTGGAGACAGGGTCTATACAAATCACCTAGCTGAGCT  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTTAA-TTTGGAGACAGGGTCTATACAAATCACCTAGCTGAGCT  283

seq1  TGAACTCTCTTTGTAGCCCAGACAGGACTTGAACTTGTGACTCTCCTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCTCTTTGTAGCCCAGACAGGACTTGAACTTGTGACTCTCCTTGC  333

seq1  TCTGCCTTCCAACTTGTGGGATTACCTACATTACAATCCCAGGCCTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTCCAACTTGTGGGATTACCTACATTACAATCCCAGGCCTGGCT  383

seq1  CAGTTTCTTAGCTTCTTTCATGAGCACGCTATCATTGCACTAACTAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTTAGCTTCTTTCATGAGCACGCTATCATTGCACTAACTAGTCT  433

seq1  TGTACTTTTGACCTCTCTTCTCTCCTTCACGTCTCTCAAGTTTCTATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTTTGACCTCTCTTCTCTCCTTCACGTCTCTCAAGTTTCTATGTA  483

seq1  ATAGTCCCTTCATTTATCAGAGTTTGTTTGTTTATATTTTGGGTTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCCCTTCATTTATCAGAGTTTGTTTGTTTATATTTTGGGTTGTTTT  533

seq1  GCTTTGCATTGCTTGACATTTCGAATCTTGAGACCTGACTCTTTCCAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCATTGCTTGACATTTCGAATCTTGAGACCTGACTCTTTCCAATT  583

seq1  ATCCAAGTTTGGATAAAGGCAAACCTTGGTTTCTTTAATAGCATTTTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGTTTGGATAAAGGCAAACCTTGGTTTCTTTAATAGCATTTTTGC  633

seq1  ACTTGCCTTGAGAACAAAATGTTTTATTTTTGCCAATTCCCATGCAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCTTGAGAACAAAATGTTTTATTTTTGCCAATTCCCATGCAAAGC  683

seq1  AAAATCTACTGTGAGATCTAGAGCATTTTCATCGTGGGCTCAGCTTCCGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTACTGTGAGATCTAGAGCATTTTCATCGTGGGCTCAGCTTCCGC  733

seq1  TTCCGATACAGTAACACGCTCATGATTTCCTCCCATGGGTAGCATACTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGATACAGTAACACGCTCATGATTTCCTCCCATGGGTAGCATACTTC  783

seq1  CAGCTCCCCTGGAGAAAAAAGAAAGGGCAGAACCAATCAATGTCTGTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCCCTGGAGAAAAAAGAAAGGGCAGAACCAATCAATGTCTGTGAA  833

seq1  GATGTCTGCAACAGTGAAGGACACATTAAATTGAAAGTAGTAAGCCAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTGCAACAGTGAAGGACACATTAAATTGAAAGTAGTAAGCCAATG  883

seq1  TGATAGCTAGGGCATCGGCATTCTTCAGTGTGCCACAGATGGTAGCACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCTAGGGCATCGGCATTCTTCAGTGTGCCACAGATGGTAGCACAG  933

seq1  TAGAGCGTGAGTTCAAGAGATCCCCTGAATGAGAAAGCTGGTTCTGCAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCGTGAGTTCAAGAGATCCCCTGAATGAGAAAGCTGGTTCTGCAGT  983

seq1  CAGGGTTCTTCTGTAAACTTCGACAACGATGCTCCGCTCCTGTTTGCAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTCTTCTGTAAACTTCGACAACGATGCTCCGCTCCTGTTTGCAAA  1033

seq1  TGATTTCTACTTTACACACCTCTTTGGAAATTGGACACTAATCATTTGGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTACTTTACACACCTCTTTGGAAATTGGACACTAATCATTTGGG  1083

seq1  TTTGGAATGAGTATGTCTGTGTGTGTTCATATGTATGCGTGGGGGTCACT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAATGAGTATGTCTGTGTGTGTTCATATGTATGCGTGGGGGTCACT  1133

seq1  TGTGCAGGCTCATGTGGAGGCCAGAGATTGACTTCAAGAATTC  1193
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGGCTCATGTGGAGGCCAGAGATTGACTTCAAGAATTC  1176

seq1: chr3_118717881_118718494
seq2: B6Ng01-105A08.g_547_1149

seq1  GCTTTCTAGGAGTGTCCTTAGGTTTCTAGGGAATGCCTGTTGTATTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTAGGAGTGTCCTTAGGTTTCTAGGGAATGCCTGTTGTATTTGGG  50

seq1  GGCTCCCATAAAGCAATTTGTAGGCAGGGAGTTGAGAGGAGAATTTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCATAAAGCAATTTGTAGGCAGGGAGTTGAGAGGAGAATTTGGAG  100

seq1  TGAAGATCTATATGATCCACTGGTGGTGGGGCAGGGCAGGGGTGAGTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATCTATATGATCCACTGGTGGTGGGGCAGGGCAGGGGTGAGTAGC  150

seq1  AGCCAGTGGTCTACTATAAACTTGGGGATGAGGCTAAGGAGATTTGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTGGTCTACTATAAACTTGGGGATGAGGCTAAGGAGATTTGGAGA  200

seq1  AGAGACATAAGAGGTGAAAATGTGGAGTTAGGCTGCCTTCTTCATGGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACATAAGAGGTGAAAATGTGGAGTTAGGCTGCCTTCTTCATGGGCT  250

seq1  GGAAGAACCCACATTTCCTGTATGCTTCTACAGAATGCCTGCTGGAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAACCCACATTTCCTGTATGCTTCTACAGAATGCCTGCTGGAGTTG  300

seq1  TGGGCTGGGATAATGGAATAAATTAGGAGAAGTTTGGAGAGAAGATCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGGGATAATGGAATAAATTAGGAGAAGTTTGGAGAGAAGATCTTT  350

seq1  GTGATCCTCTGGAATTAGGGAAGAAAGGGAGGCCACAGCCAATGGTC-TG  399
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  GTGATCCTCTGGAATTAGGGAAGAAAGGGAGGCCACAGCC-ATGGTCTTG  399

seq1  CTACAGAGCTGAGGATGAGACTGGAAGGTTGGATTAGGAGAAAAAGAAAG  449
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTACAGAGCTGAGGATGAGACTGGAAGGTTGGATTAGGAG-AAAAGAAAG  448

seq1  GAAGATAAAGAT-CTGCAGTTAGGCTACTTGCTTTTCTTGGCTAAGGTTC  498
      |||||| ||||| |||||| ||||||||||||||||||||||||| ||||
seq2  GAAGAT-AAGATCCTGCAG-TAGGCTACTTGCTTTTCTTGGCTAA-GTTC  495

seq1  AATGCATTTTTTTTTAAATACTTCATTCCAAATTTAGGCTAGTTGACTAT  548
       |||||||||||||| ||||||||||| ||| |||||||||||  |||||
seq2  -ATGCATTTTTTTTT-AATACTTCATT-CAATTTTAGGCTAGTGTACTAT  542

seq1  AAAGCAGACGAATCAATTTCCAATATAATTACATCTTCACCTCTTTTCCA  598
      ||||  |||||||| | |||| |||||||| || |||||||| ||||| |
seq2  AAAGATGACGAATC-AGTTCCCATATAATT-CAGCTTCACCT-TTTTCTA  589

seq1  TTTCAGGCTATGATTT  614
      ||| | || |||||||
seq2  TTT-ACGC-ATGATTT  603