BAC Information

Click to search

BAC

Clone NameB6Ng01-105A23
Chromosome3 (Build37)
Map Location 55,089,187 - 55,221,378
singlet/doubletdoublet
Overlap geneDclk1
Upstream geneTrpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2
Downstream geneMab21l1, 4933417G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105A23.bB6Ng01-105A23.g
ACCDH913184DH913185
length1,181980
definitionDH913184|Mus musculus domesticus DNA, BAC clone: B6Ng01-105A23, 5' end.DH913185|Mus musculus domesticus DNA, BAC clone: B6Ng01-105A23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,220,198 - 55,221,378)(55,089,187 - 55,090,159)
sequence
gaattcacttttgctaattatgaactactttagaccatagatgctctctg
tgctcagcccttttttgtggcactgtcatctgtagggacacgaattaggt
aatcaactcctattgttgtgttttaattttatcataacttggtgccaaag
agacagtgtacagatgtacaaactgtcttgagcaaaaaccataaagcttt
ttcttcttggtggaaaaaaaaaaatgttcctaaaaaagtagcaggaaaca
gaaaagatatttccagaagtttctctgttgctgtctcaagccagggcctc
ctgagcagctctgagcactgatttgctaagtagggtcagactacattggg
ttcagcaatcccaatatcatgggtagcagctattttatggtgcagaagaa
gtaagacagaaagatgagaaaagaacttccagaggctggccaaggttgtt
ctggggccatgactgggttcataggaggggtttcctgggtgtactccatg
gctaaagtagtaaccccttcatggcagatacctatcaaaactgcagaggc
tgcccaggaccacagatagtgcaaaattcccattcatactcacgtaggcc
atgtttctttttcctatacatacctatgtacaatgaagtttagttcatca
gttaggtttactaggacattaataataactaataataaaatataataatt
ataaaaacatgccacacttacattgtcaacataactgctttggaggtcac
tcttacattaaataaatacatttgcaatgctacgccggttgggctgaaag
ctggggcagttaggagtgagcctgtgttgggtacggtgtggtgaggcagt
ttgggggggggaatcagctcctaattacatactttctgctcacttagcca
gtcaagtctctacatttctgaacaggatggtcctcccttgggatgcactg
gatggtcatcctgggagtgcactggatggtctcccttgggggtgcactgg
gatggttccttccctgggatgtcacttgaatggtcctcccctgggggagc
actggatgggtcctacttgggatgcactgtgcatgtcctcctgcggctca
tggaatggtcctcctatggcaggcacgtgaagatccttcttaagcgagga
ctagcaagtctcactggagtgcactggatgg
gaattcaatctagccgatgcactattcatcctctctgctttgttttggct
aatggatttctgtacattccttgtactctgctctggatcttcatgtgctt
tgataggtacgttatttttgcaaactaagaatcccttgcttgtccttgga
caggttggatgacttctctccatctcttgttcattgtctaaaatacatga
ctgatggctgcgtcagtgttaagataacatgtgtgaatgtctggtgaggt
aaacactgaggacccttgaactgcatcagctttccaaaagagccaaatct
gtagtggtgaatcagtagctgcctgggctgcaggtagaagcagagactga
tgacaaaagaggtttaaaactatattgtcgggctggccattcactgttga
ataacccatttagctgaataattctacagtatataaatacctcaataaag
ctgtttctgaaagtgtttgctataggcagaagtagaatattaaaccttgc
ttcttatgtgctttctaatgcctttaacgatatatttttattttatgtgt
atgaatgttttgcctcatgtatgactgggcatcccatgtgtacagtgact
ctagactagatgaggttgtcaaatcccctggaattggagttttagacact
tgtgagccaccaggtagatgctaagaaccaaactgggtcctttggaaggg
cagccagtgctcttaaccactgagccatctctccagcctatcttgtgcta
gttcggagggactgttagatcattttagaacatgctgtttaaaccaaaat
atcctagaacccacatagtgataactgtgaattacacatatttatgcaca
ttatgatacaacaaatagttataatcattatttgtcacaatattatgtaa
ttttgggatgccttatggacagctcaactttaatatcctgtggggattag
tacaaatattttgttgtgtttggtagctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_55220198_55221378
seq2: B6Ng01-105A23.b_43_1223 (reverse)

seq1  CCATCCAGTGCACCCCCAGGGAGGACCATCCAGTGCACCCCCAGGGAGGA  50
      |||||||||||| | |||| || |||   | ||| | | |  | | ||||
seq2  CCATCCAGTGCA-CTCCAGTGA-GACTTGCTAGTCCTCGCTTAAGAAGGA  48

seq1  CCATCCAGTGCACCCCCAGGGAGGACCATCCAGTGCACCCCCAGGGAGGA  100
       | ||  ||||   ||   |||||||||| |  || | || || ||||||
seq2  TCTTCACGTGCCTGCCATAGGAGGACCATTCCATG-AGCCGCA-GGAGGA  96

seq1  CCATC-CAGTGCATCCCCAGGGAGGA-CCATCCAGTGCACCCCCA-GGGA  147
      |   | |||||||| |||| | |||| ||||||||||| |||||| ||||
seq2  CATGCACAGTGCAT-CCCAAGTAGGACCCATCCAGTGCTCCCCCAGGGGA  145

seq1  GGACCA-TCCAGTG-CATCCCCAGGGAGG-ACCAT-CCAGTGCACCCCCA  193
      |||||| || |||| ||||||  || ||| ||||| ||||||||||||||
seq2  GGACCATTCAAGTGACATCCCAGGGAAGGAACCATCCCAGTGCACCCCCA  195

seq1  GGGAGGACCATCCAGTGCACCCCCAGGGAGGACCATCCAGTGCATCCCCA  243
       ||  ||||||||||||||| |||| ||| |||||||||||||||||| |
seq2  AGGGAGACCATCCAGTGCACTCCCA-GGATGACCATCCAGTGCATCCCAA  244

seq1  GGGAGGACCATCCTGTTTCAGAAATGTAGAGACTTGACTGGCTAAGTGAG  293
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGGAGGACCATCCTG-TTCAGAAATGTAGAGACTTGACTGGCTAAGTGAG  293

seq1  CAGAAAGTATGTAATTAGGAGCTGATTTCCCCCCCCAAACTGCCTCACCA  343
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGAAAGTATGTAATTAGGAGCTGATTCCCCCCCCCAAACTGCCTCACCA  343

seq1  CACCGTACCCAACACAGGCTCACTCCTAACTGCCCCAGCTTTCAGCCCAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTACCCAACACAGGCTCACTCCTAACTGCCCCAGCTTTCAGCCCAA  393

seq1  CCGGCGTAGCATTGCAAATGTATTTATTTAATGTAAGAGTGACCTCCAAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCGTAGCATTGCAAATGTATTTATTTAATGTAAGAGTGACCTCCAAA  443

seq1  GCAGTTATGTTGACAATGTAAGTGTGGCATGTTTTTATAATTATTATATT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTATGTTGACAATGTAAGTGTGGCATGTTTTTATAATTATTATATT  493

seq1  TTATTATTAGTTATTATTAATGTCCTAGTAAACCTAACTGATGAACTAAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTAGTTATTATTAATGTCCTAGTAAACCTAACTGATGAACTAAA  543

seq1  CTTCATTGTACATAGGTATGTATAGGAAAAAGAAACATGGCCTACGTGAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTGTACATAGGTATGTATAGGAAAAAGAAACATGGCCTACGTGAG  593

seq1  TATGAATGGGAATTTTGCACTATCTGTGGTCCTGGGCAGCCTCTGCAGTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATGGGAATTTTGCACTATCTGTGGTCCTGGGCAGCCTCTGCAGTT  643

seq1  TTGATAGGTATCTGCCATGAAGGGGTTACTACTTTAGCCATGGAGTACAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGGTATCTGCCATGAAGGGGTTACTACTTTAGCCATGGAGTACAC  693

seq1  CCAGGAAACCCCTCCTATGAACCCAGTCATGGCCCCAGAACAACCTTGGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAACCCCTCCTATGAACCCAGTCATGGCCCCAGAACAACCTTGGC  743

seq1  CAGCCTCTGGAAGTTCTTTTCTCATCTTTCTGTCTTACTTCTTCTGCACC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCTGGAAGTTCTTTTCTCATCTTTCTGTCTTACTTCTTCTGCACC  793

seq1  ATAAAATAGCTGCTACCCATGATATTGGGATTGCTGAACCCAATGTAGTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAGCTGCTACCCATGATATTGGGATTGCTGAACCCAATGTAGTC  843

seq1  TGACCCTACTTAGCAAATCAGTGCTCAGAGCTGCTCAGGAGGCCCTGGCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTACTTAGCAAATCAGTGCTCAGAGCTGCTCAGGAGGCCCTGGCT  893

seq1  TGAGACAGCAACAGAGAAACTTCTGGAAATATCTTTTCTGTTTCCTGCTA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGCAACAGAGAAACTTCTGGAAATATCTTTTCTGTTTCCTGCTA  943

seq1  CTTTTTTAGGAACATTTTTTTTTTTCCACCAAGAAGAAAAAGCTTTATGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTAGGAACATTTTTTTTTTTCCACCAAGAAGAAAAAGCTTTATGG  993

seq1  TTTTTGCTCAAGACAGTTTGTACATCTGTACACTGTCTCTTTGGCACCAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTCAAGACAGTTTGTACATCTGTACACTGTCTCTTTGGCACCAA  1043

seq1  GTTATGATAAAATTAAAACACAACAATAGGAGTTGATTACCTAATTCGTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGATAAAATTAAAACACAACAATAGGAGTTGATTACCTAATTCGTG  1093

seq1  TCCCTACAGATGACAGTGCCACAAAAAAGGGCTGAGCACAGAGAGCATCT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACAGATGACAGTGCCACAAAAAAGGGCTGAGCACAGAGAGCATCT  1143

seq1  ATGGTCTAAAGTAGTTCATAATTAGCAAAAGTGAATTC  1181
      ||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTAAAGTAGTTCATAATTAGCAAAAGTGAATTC  1181

seq1: chr3_55089187_55090159
seq2: B6Ng01-105A23.g_68_1047

seq1  GAATTCAATCTAGCCGATGCACTATTCATCCTCTCTGCTTTGTTTTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTAGCCGATGCACTATTCATCCTCTCTGCTTTGTTTTGGCT  50

seq1  AATGGATTTCTGTACATTCCTTGTACTCTGCTCTGGATCTTCATGTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATTTCTGTACATTCCTTGTACTCTGCTCTGGATCTTCATGTGCTT  100

seq1  TGATAGGTACGTTATTTTTGCAAACTAAGAATCCCTTGCTTGTCCTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGTACGTTATTTTTGCAAACTAAGAATCCCTTGCTTGTCCTTGGA  150

seq1  CAGGTTGGATGACTTCTCTCCATCTCTTGTTCATTGTCTAAAATACATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGGATGACTTCTCTCCATCTCTTGTTCATTGTCTAAAATACATGA  200

seq1  CTGATGGCTGCGTCAGTGTTAAGATAACATGTGTGAATGTCTGGTGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGCTGCGTCAGTGTTAAGATAACATGTGTGAATGTCTGGTGAGGT  250

seq1  AAACACTGAGGACCCTTGAACTGCATCAGCTTTCCAAAAGAGCCAAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGAGGACCCTTGAACTGCATCAGCTTTCCAAAAGAGCCAAATCT  300

seq1  GTAGTGGTGAATCAGTAGCTGCCTGGGCTGCAGGTAGAAGCAGAGACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGTGAATCAGTAGCTGCCTGGGCTGCAGGTAGAAGCAGAGACTGA  350

seq1  TGACAAAAGAGGTTTAAAACTATATTGTCGGGCTGGCCATTCACTGTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAAGAGGTTTAAAACTATATTGTCGGGCTGGCCATTCACTGTTGA  400

seq1  ATAACCCATTTAGCTGAATAATTCTACAGTATATAAATACCTCAATAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCATTTAGCTGAATAATTCTACAGTATATAAATACCTCAATAAAG  450

seq1  CTGTTTCTGAAAGTGTTTGCTATAGGCAGAAGTAGAATATTAAACCTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCTGAAAGTGTTTGCTATAGGCAGAAGTAGAATATTAAACCTTGC  500

seq1  TTCTTATGTGCTTTCTAATGCCTTTAACGATATATTTTTATTTTATGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATGTGCTTTCTAATGCCTTTAACGATATATTTTTATTTTATGTGT  550

seq1  ATGAATGTTTTGCCTCATGTATGACTGGGCATCCCATGTGTACAGTGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGTTTTGCCTCATGTATGACTGGGCATCCCATGTGTACAGTGACT  600

seq1  CTAGACTAGATGAGGTTGTCAAATCCCCTGGAATTGGAGTTTTAGACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTAGATGAGGTTGTCAAATCCCCTGGAATTGGAGTTTTAGACACT  650

seq1  TGTGAGCCACCAGGTAGATGCTAAGAACCAAACTGGGTCCTTTGGAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCACCAGGTAGATGCTAAGAACCAAACTGGGTCCTTTGGAAGGG  700

seq1  CAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCTATCTTGTGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCTATCTTGTGCTA  750

seq1  GTTCGGA-GGACTGTTAGATCATTTTAGAACATGCTGTTTAAACCAAAAT  799
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGGAGGGACTGTTAGATCATTTTAGAACATGCTGTTTAAACCAAAAT  800

seq1  ATCCTAGAACCCACATAGTGATAACTGTGAATTACACATATTTATGCACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGAACCCACATAGTGATAACTGTGAATTACACATATTTATGCACA  850

seq1  TTATGATACAACAAAATAGTTATAATCATTA-TTGTCACAATATTATGTA  898
      |||||||||||| |||||||||||||||||| ||||||||||||||||||
seq2  TTATGATACAAC-AAATAGTTATAATCATTATTTGTCACAATATTATGTA  899

seq1  ATTT--GGATGCC-TATGGACAGCTCAACTTTAATAT-CTGTGGGGA-TA  943
      ||||  ||||||| ||||||||||||||||||||||| ||||||||| ||
seq2  ATTTTGGGATGCCTTATGGACAGCTCAACTTTAATATCCTGTGGGGATTA  949

seq1  GTAC-AATA-TTTGTTGTGTTTTGGTAGCTGA  973
      |||| |||| ||||||||| ||||||||||||
seq2  GTACAAATATTTTGTTGTG-TTTGGTAGCTGA  980