BAC Information

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BAC

Clone NameB6Ng01-105B03
Chromosome3 (Build37)
Map Location 6,753,905 - 6,754,964
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041165, LOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
Downstream geneEG667801, Pkia, LOC667807, 3110050N22Rik, Il7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105B03.bB6Ng01-105B03.g
ACCDH913190DH913191
length1,2421,072
definitionDH913190|Mus musculus domesticus DNA, BAC clone: B6Ng01-105B03, 5' end.DH913191|Mus musculus domesticus DNA, BAC clone: B6Ng01-105B03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgata
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttatcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagattttaccttagtacaaggagataagtatggatcgattcac
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaaaatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttccttattttctttcttcagagatttgaagttttatcatac
agatctttcactttccttagttagagtcacgccaaggtattttatattat
ttgtgactattgagaagggtgtgtttccctaatttctttctcagcctgtt
tattctttgttagagaaaggccattgacttgtttggagttatttttatat
ccaggctacttcaccgagctgtttatcagttaggagtctctggtagaaat
tttaggtctactataaataactatcaattcattctgcaaaagggaatttg
gacttctctttcaaattggatccttgatcctgtggccatgtctggctaaa
cttcagatatcagtgaaaatgcagagttgacgcgatgcagac
gaattcagacccttagctgcacaagatgctgagaataaagtcccattgag
gattcagctctaaaagtgacacttggaccaccattttcaggcttgtgaat
gctgcaaaagatggtacagagaacaaataaaagtcagccctatcttcagt
cagttatgcaggcagaggaggctcaagagccctactgcacacaagcgaat
tacttacaactaacagaatctgtgtgcttgggaggatagcgcctactgaa
aacccctcaaactttagtgaataagtccaaactcatggccacacagagga
ccgtaattaaattctgtgggatacaaaatgaaacccaaagtcatgatcct
gaggaccaggtctaccagggaagggtgctgaaggagtaggagggagaaaa
gaggtagggtagaggcagtgctctgaatgttttgtatacttgtatgaaac
tgtcaaagataaaaatatattaataaaaaggtaaaaaggaatggctagtt
gttcatttatttatactgtttatgcttctacaacttacaatgaaaaggat
tgaactacaacagtaacctaacaagagacgtttctctgactatctcaaaa
acattcttgaaagaaaatttgtgtttaacgctatgttgtctttgttcaat
attggaaacataaaagtgtatttccaagggatttactactgctaataatt
ttatgtttgacaaaattaaaaatattttgcatttggaaaatgagtatgaa
aatcaaggaagacttatagcaaatgtctttacaaatgataaaacttattg
ataagctacttatgagagaaattagaagcctaacttttctgtaagagaat
tttaaataaattaaagaattttaaacaaacattcatgggtggtcatttaa
ggagatagtgacaaaatttgtttactgttaaagtctggattttataaacc
agcatttctgataattttagttttgtatttaattcttgcactcaagcttt
agttctttcctttctttcttccttccttcttcttacatcatctttttttt
tggattctgattaggttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_6753905_6754964
seq2: B6Ng01-105B03.g_69_1140 (reverse)

seq1  AAAAAAACAAAAAAAAAA---AGAAAGAAAGA--AAGAAAGA--AAGAAA  43
      ||||||||  ||  | ||   | ||| |||||  | | ||||  ||| ||
seq2  AAAAAAACCTAATCAGAATCCAAAAAAAAAGATGATGTAAGAAGAAGGAA  50

seq1  GGAAGAAAGAAA-GAAAGAACTAAAGCTAGAGTGCAAGAATAAATAACAA  92
      |||||||||||| ||||||||||||||| |||||||||||| ||  ||||
seq2  GGAAGAAAGAAAGGAAAGAACTAAAGCTTGAGTGCAAGAATTAAATACAA  100

seq1  AACTAAAATTATCAGAAATGCTGGTTTATAAAAT-CAGACTTTAACAGTA  141
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AACTAAAATTATCAGAAATGCTGGTTTATAAAATCCAGACTTTAACAGTA  150

seq1  AACAAA-TTTGTCACTATCTCC-TAAATGA-CACCCATGAATGTTTGTTT  188
      |||||| ||||||||||||||| ||||||| |||||||||||||||||||
seq2  AACAAATTTTGTCACTATCTCCTTAAATGACCACCCATGAATGTTTGTTT  200

seq1  AAAATTCTTTAATTTATTTAAAATTCTCTTACAGAAAAGTTAGGCTTCTA  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTTTAATTTATTTAAAATTCTCTTACAGAAAAGTTAGGCTTCTA  250

seq1  ATTTCTCTCATAAGTAGCTTATCAATAAGTTTTATCATTTGTAAAGACAT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTCATAAGTAGCTTATCAATAAGTTTTATCATTTGTAAAGACAT  300

seq1  TTGCTATAAGTCTTCCTTGATTTTCATACTCATTTTCCAAATGCAAAATA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATAAGTCTTCCTTGATTTTCATACTCATTTTCCAAATGCAAAATA  350

seq1  TTTTTAATTTTGTCAAACATAAAATTATTAGCAGTAGTAAATCCCTTGGA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTTTGTCAAACATAAAATTATTAGCAGTAGTAAATCCCTTGGA  400

seq1  AATACACTTTTATGTTTCCAATATTGAACAAAGACAACATAGCGTTAAAC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACTTTTATGTTTCCAATATTGAACAAAGACAACATAGCGTTAAAC  450

seq1  ACAAATTTTCTTTCAAGAATGTTTTTGAGATAGTCAGAGAAACGTCTCTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTTCTTTCAAGAATGTTTTTGAGATAGTCAGAGAAACGTCTCTT  500

seq1  GTTAGGTTACTGTTGTAGTTCAATCCTTTTCATTGTAAGTTGTAGAAGCA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGTTACTGTTGTAGTTCAATCCTTTTCATTGTAAGTTGTAGAAGCA  550

seq1  TAAACAGTATAAATAAATGAACAACTAGCCATTCCTTTTTACCTTTTTAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTATAAATAAATGAACAACTAGCCATTCCTTTTTACCTTTTTAT  600

seq1  TAATATATTTTTATCTTTGACAGTTTCATACAAGTATACAAAACATTCAG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATTTTTATCTTTGACAGTTTCATACAAGTATACAAAACATTCAG  650

seq1  AGCACTGCCTCTACCCTACCTCTTTTCTCCCTCCTACTCCTTCAGCACCC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGCCTCTACCCTACCTCTTTTCTCCCTCCTACTCCTTCAGCACCC  700

seq1  TTCCCTGGTAGACCTGGTCCTCAGGATCATGACTTTGGGTTTCATTTTGT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGGTAGACCTGGTCCTCAGGATCATGACTTTGGGTTTCATTTTGT  750

seq1  ATCCCACAGAATTTAATTACGGTCCTCTGTGTGGCCATGAGTTTGGACTT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACAGAATTTAATTACGGTCCTCTGTGTGGCCATGAGTTTGGACTT  800

seq1  ATTCACTAAAGTTTGAGGGGTTTTCAGTAGGCGCTATCCTCCCAAGCACA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTAAAGTTTGAGGGGTTTTCAGTAGGCGCTATCCTCCCAAGCACA  850

seq1  CAGATTCTGTTAGTTGTAAGTAATTCGCTTGTGTGCAGTAGGGCTCTTGA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCTGTTAGTTGTAAGTAATTCGCTTGTGTGCAGTAGGGCTCTTGA  900

seq1  GCCTCCTCTGCCTGCATAACTGACTGAAGATAGGGCTGACTTTTATTTGT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTCTGCCTGCATAACTGACTGAAGATAGGGCTGACTTTTATTTGT  950

seq1  TCTCTGTACCATCTTTTGCAGCATTCACAAGCCTGAAAATGGTGGTCCAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTACCATCTTTTGCAGCATTCACAAGCCTGAAAATGGTGGTCCAA  1000

seq1  GTGTCACTTTTAGAGCTGAATCCTCAATGGGACTTTATTCTCAGCATCTT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACTTTTAGAGCTGAATCCTCAATGGGACTTTATTCTCAGCATCTT  1050

seq1  GTGCAGCTAAGGGTCTGAATTC  1060
      ||||||||||||||||||||||
seq2  GTGCAGCTAAGGGTCTGAATTC  1072