BAC Information

Click to search

BAC

Clone NameB6Ng01-105C01
Chromosome3 (Build37)
Map Location 112,789,054 - 112,790,120
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625585, EG229746, LOC668717
Downstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3, Col11a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105C01.bB6Ng01-105C01.g
ACCDH913232DH913233
length1,0391,069
definitionDH913232|Mus musculus domesticus DNA, BAC clone: B6Ng01-105C01, 5' end.DH913233|Mus musculus domesticus DNA, BAC clone: B6Ng01-105C01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaagacttttatcattaatgggtgttagattttg
ccaaatgctttctcagcatctaaggagatgatcatgtggctttttgtctt
tgagtttgtttatatactggattacgttgatggatttccgtatattgaac
catccctgcatccctgggatgaaacctgcatccctgcatccctgggatga
aacctggtcaggatggatgattgttttgatgtgttcttggattcgtttag
caagaactttattgaggatttttgcaacaatattcataagggattttttc
tgaagttctttatctttgtggggcctttttgtggtttaggtatcagagta
attgtggcttcatagaatgagttgggtagagtaccttctgtttctatttt
gtggaagagtttgtgaagaactggggttagatcttctttgaaggtctgat
agaactctgcactaaacccatctggtcctgggcttttttttggttgcaag
actattaatgactgcttctatttctttgggggatattgggctgtttagat
cattaacctgatctttattcaactttggtacctggtatctgtctagaaac
ttctccatttcatccaggttctccagttttgttgagtatagcctttttgt
agaaggatctgatggtgtttttggatttcttcgggatctgttgttatgtc
tcctttttcatttctgattttgttaattagaatgctttccctgtgccctc
tagtgagtctggctaagggtttgtctatcttgtttgattttctcaaagaa
ccagctcctcgattggttgattctctgaatagttcttctgttttcacttg
gtttgatttcgcccctgagttgattattttcttgccatctactgctcttg
ggtgaattgctttcctttggttcagagcttttaggtgtgttgtccagctg
ctatgtatgctccctctagttctttttggaggcactcagagctatgagtt
tcctcctagaatgcctttcattgtttcccttaatgttgg
gaattccaaaacttaatttctgccatatttattagcaaacagttgtagct
ccaatactggtcaattctttacattctcttttttttattattatttaaag
ttatttcaatagaaaagctcttaacttctatcttctggttaaaatgtgat
ttgtgcattgttcataatacagattctcaggcattaaaaaagaatcacag
ttaaaatctacacaacaggttttataacttacagccccttctacctgtca
tcatgcttaccagagaaaatataaatagcctttatagacaaattatatga
gagtgagaagtaacagaaagcaataacaataggaatagaataaaatcaga
aaagaaaactgagtggctaaataaatgaagacatgtctataaggaactca
tcatgaaacagaaataaattaattaaacagaaaaaatgaaacaaacctaa
atgatataccaaagtcagagattagatctcaattgcagtgtaggaaagtt
atgtttacataatttaataattcatgacataatttgttttatgtgtgttc
tatatattaaacacacatacacctatgtacatacatcataagcacatata
cacatatgtatattctagatctacctatctatttggaaacagtgtaccac
agaagaaaactttaaatgaaatttttgttcaatgagtgtgaagactactg
aaatattgttgctacatagatcttatttgaagtgaagaatatacaagaaa
atttattgaaaaacatttgcacatgagtgtctaggatattaccaaaatca
atgaaacactcaaaaccaagggttaaaaaacatatttgatatattttaaa
aattaaataaaattggaccaacaaaagcatattatgttgacaatcagcag
atttcatctggaatacaaaaaaacctaggatagcaaaactcttctcaagg
aaaaaagaacctctgggtggaatcaccatgtctgacctaaagctgtactt
acaggagcaattgtgataaaactggcatggtactgggtatagcaacagga
cagtagaccatgggaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_112789054_112790120
seq2: B6Ng01-105C01.g_67_1135

seq1  GAATTCCAAAACTTAATTTCTGCCATATTTATTAGCAAACAGTTGTAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAACTTAATTTCTGCCATATTTATTAGCAAACAGTTGTAGCT  50

seq1  CCAATACTGGTCAATTCTTTACATTCTCTTTTTTTTATTATTATTTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATACTGGTCAATTCTTTACATTCTCTTTTTTTTATTATTATTTAAAG  100

seq1  TTATTTCAATAGAAAAGCTCTTAACTTCTATCTTCTGGTTAAAATGTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCAATAGAAAAGCTCTTAACTTCTATCTTCTGGTTAAAATGTGAT  150

seq1  TTGTGCATTGTTCATAATACAGATTCTCAGGCATTAAAAAAGAATCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCATTGTTCATAATACAGATTCTCAGGCATTAAAAAAGAATCACAG  200

seq1  TTAAAATCTACACAACAGGTTTTATAACTTACAGCCCCTTCTACCTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCTACACAACAGGTTTTATAACTTACAGCCCCTTCTACCTGTCA  250

seq1  TCATGCTTACCAGAGAAAATATAAATAGCCTTTATAGACAAATTATATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTTACCAGAGAAAATATAAATAGCCTTTATAGACAAATTATATGA  300

seq1  GAGTGAGAAGTAACAGAAAGCAATAACAATAGGAATAGAATAAAATCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGAAGTAACAGAAAGCAATAACAATAGGAATAGAATAAAATCAGA  350

seq1  AAAGAAAACTGAGTGGCTAAATAAATGAAGACATGTCTATAAGGAACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAACTGAGTGGCTAAATAAATGAAGACATGTCTATAAGGAACTCA  400

seq1  TCATGAAACAGAAATAAATTAATTAAACAGAAAAAATGAAACAAACCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAACAGAAATAAATTAATTAAACAGAAAAAATGAAACAAACCTAA  450

seq1  ATGATATACCAAAGTCAGAGATTAGATCTCAATTGCAGTGTAGGAAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATACCAAAGTCAGAGATTAGATCTCAATTGCAGTGTAGGAAAGTT  500

seq1  ATGTTTACATAATTTAATAATTCATGACATAATTTGTTTTATGTGTGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTACATAATTTAATAATTCATGACATAATTTGTTTTATGTGTGTTC  550

seq1  TATATATTAAACACACATACACCTATGTACATACATCATAAGCACATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTAAACACACATACACCTATGTACATACATCATAAGCACATATA  600

seq1  CACATATGTATATTCTAGATCTACCTATCTATTTGGAAACAGTGTACCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATGTATATTCTAGATCTACCTATCTATTTGGAAACAGTGTACCAC  650

seq1  AGAAGAAAACTTTAAATGAAATTTTTGTTCAATGAGTGTGAAGACTACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAACTTTAAATGAAATTTTTGTTCAATGAGTGTGAAGACTACTG  700

seq1  AAATATTGTTGCTACATAGATCTTATTTGAAGTGAAGAATATACAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGTTGCTACATAGATCTTATTTGAAGTGAAGAATATACAAGAAA  750

seq1  ATTTATTGAAAAACA-TTGCACATGAGTGTCTAGGATATTACCAAAATCA  799
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATTTATTGAAAAACATTTGCACATGAGTGTCTAGGATATTACCAAAATCA  800

seq1  ATGAAACACTCAAAACCAAGGGTTAAAAAACATATTTGATATATTTTAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACACTCAAAACCAAGGGTTAAAAAACATATTTGATATATTTTAAA  850

seq1  AATTAAATAAAAATTGGACCAACAAAAGCATATTATGTTGACAATCAGCA  899
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAT-AAAATTGGACCAACAAAAGCATATTATGTTGACAATCAGCA  899

seq1  GA-TTCATCTGGAATAACAAAAAAAACCTAGGATAGCAAAAACTCTTCTC  948
      || |||||||||||||   |||||||||||||||||| ||||||||||||
seq2  GATTTCATCTGGAATA--CAAAAAAACCTAGGATAGC-AAAACTCTTCTC  946

seq1  AAGGAAAAAAGAACCTCT-GGTGGAATCACCATGTCTGACCTAAAGCTGT  997
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGGAAAAAAGAACCTCTGGGTGGAATCACCATGTCTGACCTAAAGCTGT  996

seq1  AC-TACA-GAGCAATTGTGATAAAAACTGCATGGTACT-GGTATAGCAAC  1044
      || |||| |||||||||||||||||   |||||||||| |||||||||||
seq2  ACTTACAGGAGCAATTGTGATAAAACTGGCATGGTACTGGGTATAGCAAC  1046

seq1  AGACAAGTAGACCAATGGAACAA  1067
      ||   |||||||||  |||||||
seq2  AGGACAGTAGACCATGGGAACAA  1069