BAC Information

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BAC

Clone NameB6Ng01-105D19
Chromosome3 (Build37)
Map Location 142,663,767 - 142,821,755
singlet/doubletdoublet
Overlap geneLOC100039883
Upstream geneGabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053
Downstream gene1700001N15Rik, EG668889, EG621809, LOC100039938, LOC100039952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105D19.bB6Ng01-105D19.g
ACCDH913314DH913315
length1,1511,069
definitionDH913314|Mus musculus domesticus DNA, BAC clone: B6Ng01-105D19, 5' end.DH913315|Mus musculus domesticus DNA, BAC clone: B6Ng01-105D19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,663,767 - 142,664,939)(142,820,666 - 142,821,755)
sequence
gaattctttttttttcggtgggggaagaaaaggattaaaaaattattaaa
ggacatacatttgtgtagctgttcacagtttatgagagggtcttttgagg
ttatttgatgatctagctaagtacatttattcaaattcaaaataagaaaa
taggatctgattatttgaacttgctgatttagggagaaataattcattta
gatgcaccacaaattaatcttctttctaagaatcagaataaacaattgaa
attccattttgcagtgagctgtttagtaatgtctgtggggacccatttgt
ttatttgcctctgtatgatagtcttaggtaaacagcacacagccatatct
atgtgtgtctgggtagccttccacgtttttattatgcaacttagaaatga
aagggctaaatctgcagtacttagcagaacggtgaaatcacacacagtgt
aaaacactcccccaccttcttgccaaggagccttggcctttgaagaccat
ccctgaacaatcagtcccttctgtatgcctttcattcttaccgtattcca
ggctccccccttcaatgttttgtttctctgggctaaatttcatctcagtt
gattgcccaattcacttttcattcagtcataattgttttttgaattgtct
taaattctccaatggattatgacaatttgaaaattaacaatggtgcctta
attgcatggggccttgcgatccacaaaaccctgttggtggatggttccca
cctcccctctatccacctgtaatttttttccaatgtgaaaaggtaggaac
acatacacaagaataaaacacacgtggttgtgatttataaaaatacgtga
ctttctaatatttataactcaaccacagacccttgtaagaccatagcaac
aatgaagaaaaatctctctctctctctccatctctccctctctttctccc
tctgtctttctatccctctctttttttctctctttctcctatttttaaaa
aacagggtcttactatgtattatttctctggtgttctgactttctatgta
gtcctgatagcctagaacttccgagtcttgcgtgccaagctggaataagg
catgtgccaccattgagtcctcagcctctttgtggcaggaaaattacagg
g
gaattcagtgggtcagacgcatgagtaaggctttgaccctgctgccattg
aaacagtcacaggcattttgcagttggtggttgtggaatagcatgtggct
cctggcactctgggctccaattatccccattgtgttcacatctgcagcgc
aaagtaacatccctactgtgacatctgctctccggataagagtggccaga
cactgctcagggattctgggggacggtgaggacttcctccacaaatttac
tttccccattggtacgaagaggggagtctttcccaagtaggtgaaccagt
gttatgtaaaaatagtcaggaagtaggtctgtgggtgtgagtgtgtacta
tctcagcagggcaaaacagacgacagtgtggggaaaccgaaaagaaaata
ttcaccgtaaagttttgaatcattaggtgttctgatgtttgtgacattaa
ttccaacaagcaatagtcttaaatataagaacttgcacaattttttttct
atcttcaaagatggctacataaacttttcttttcattttcacatacaggg
ttagtacatgcaaataaatcatcccagtcagatagaggaaaggcgcagtt
gtcttgctagacatgaatgccatgaatcaaagacaaagatgaggactgaa
gtccgacactgatgcaatctatgattctgaaaaaacaaaaacaaaaacca
agcaacaaaagacaaacaaacaaacaaacaaacactgcattctgggttta
caatgtcactatctgtaaagtactttaactaacaaaagaattacagcttt
ttaccccaatgttcctccaagtagttcagctttgccactttcttatatag
agtactgtggggtttggggttggctttcttgttttttttcttttttttac
tttaaataaaccttgactttaaaaagttattgatctttgaattttcacct
ctgagcgatgatcagatttgatcagagcacacatatgcagcctccaacac
ttgtacttcagttcgaggatctgaatctcttctgtcttcatgggcacagt
cacacagattacacagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_142663767_142664939
seq2: B6Ng01-105D19.b_44_1194

seq1  GAATTCTTTTTTTTTCGGTGGGGGAAGAAAAGGATTAAAAAATTATTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTTTCGGTGGGGGAAGAAAAGGATTAAAAAATTATTAAA  50

seq1  GGACATACATTTGTGTAGCTGTTCACAGTTTATGAGAGGGTCTTTTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATACATTTGTGTAGCTGTTCACAGTTTATGAGAGGGTCTTTTGAGG  100

seq1  TTATTTGATGATCTAGCTAAGTACATTTATTCAAATTCAAAATAAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGATGATCTAGCTAAGTACATTTATTCAAATTCAAAATAAGAAAA  150

seq1  TAGGATCTGATTATTTGAACTTGCTGATTTAGGGAGAAATAATTCATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCTGATTATTTGAACTTGCTGATTTAGGGAGAAATAATTCATTTA  200

seq1  GATGCACCACAAATTAATCTTCTTTCTAAGAATCAGAATAAACAATTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACCACAAATTAATCTTCTTTCTAAGAATCAGAATAAACAATTGAA  250

seq1  ATTCCATTTTGCAGTGAGCTGTTTAGTAATGTCTGTGGGGACCCATTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATTTTGCAGTGAGCTGTTTAGTAATGTCTGTGGGGACCCATTTGT  300

seq1  TTATTTGCCTCTGTATGATAGTCTTAGGTAAACAGCACACAGCCATATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGCCTCTGTATGATAGTCTTAGGTAAACAGCACACAGCCATATCT  350

seq1  ATGTGTGTCTGGGTAGCCTTCCACGTTTTTATTATGCAACTTAGAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTCTGGGTAGCCTTCCACGTTTTTATTATGCAACTTAGAAATGA  400

seq1  AAGGGCTAAATCTGCAGTACTTAGCAGAACGGTGAAATCACACACAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTAAATCTGCAGTACTTAGCAGAACGGTGAAATCACACACAGTGT  450

seq1  AAAACACTCCCCCACCTTCTTGCCAAGGAGCCTTGGCCTTTGAAGACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTCCCCCACCTTCTTGCCAAGGAGCCTTGGCCTTTGAAGACCAT  500

seq1  CCCTGAACAATCAGTCCCTTCTGTATGCCTTTCATTCTTACCGTATTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAACAATCAGTCCCTTCTGTATGCCTTTCATTCTTACCGTATTCCA  550

seq1  GGCTCCCCCCTTCAATGTTTTGTTTCTCTGGGCTAAATTTCATCTCAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCCCCTTCAATGTTTTGTTTCTCTGGGCTAAATTTCATCTCAGTT  600

seq1  GATTGCCCAATTCACTTTTCATTCAGTCATAATTGTTTTTTGAATTGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCCAATTCACTTTTCATTCAGTCATAATTGTTTTTTGAATTGTCT  650

seq1  TAAATTCTCCAATGGATTATGACAATTTGAAAATTAACAATGGTGCCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTCCAATGGATTATGACAATTTGAAAATTAACAATGGTGCCTTA  700

seq1  ATTGCATGGGGCCTTGCGATCCACAAAACCCTGTTGGTGGATGGTTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATGGGGCCTTGCGATCCACAAAACCCTGTTGGTGGATGGTTCCCA  750

seq1  CCTCCCCTCTATCCACCTGTAATTTTTTTCCAATGTGAAAAGGTAGGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTCTATCCACCTGTAATTTTTTTCCAATGTGAAAAGGTAGGAAC  800

seq1  ACATACACAAGAATAAAACACACGTGGTTGTGATTTATAAAAATACGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACAAGAATAAAACACACGTGGTTGTGATTTATAAAAATACGTGA  850

seq1  CTTTCTAATATTTATAACTCAACCACAGACCCTTGTAAGACCATAGCAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAATATTTATAACTCAACCACAGACCCTTGTAAGACCATAGCAAC  900

seq1  AATGAAGAAAAATCTCTCTCTCTCTCTCCATCTCTCCCTCTCTTTCTCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGAAAAATCTCTCTCTCTCTCTCCATCTCTCCCTCTCTTTCTCCC  950

seq1  TCTGTCTTTCTATCCCTCTCTTTTTTTTCTCTCTTTTCTTCCTATTTTTT  1000
      |||||||||||||||||||| |||||||||||||||   |||||||||| 
seq2  TCTGTCTTTCTATCCCTCTC-TTTTTTTCTCTCTTT--CTCCTATTTTT-  996

seq1  AAAAAACCAGGGTCTTACTATGTA-TATTTCTCTGGTTGTTCTGAACCTT  1049
       ||||| ||||||||||||||||| ||||||||||| ||||||||  |||
seq2  -AAAAAACAGGGTCTTACTATGTATTATTTCTCTGG-TGTTCTGA--CTT  1042

seq1  TCTATGTAGTCCTGATTAGCCTAGAACTCACAGAGTTCTTGCCGTGCAAA  1099
      ||||||||||||||| ||||||||||||  | ||| ||||| ||||| ||
seq2  TCTATGTAGTCCTGA-TAGCCTAGAACT-TCCGAG-TCTTG-CGTGCCAA  1088

seq1  GGCTGGGATTAAAGGCATGTGCCAACACATTGAGTCCTCAGTCTTCTTTT  1149
       ||||| ||  |||||||||||||   |||||||||||||| ||   |||
seq2  -GCTGGAAT--AAGGCATGTGCCA--CCATTGAGTCCTCAGCCT--CTTT  1131

seq1  GTGGCAGTGAAAACATTTACAGGG  1173
      ||||||| |||||   ||||||||
seq2  GTGGCAG-GAAAA---TTACAGGG  1151

seq1: chr3_142820666_142821755
seq2: B6Ng01-105D19.g_68_1136 (reverse)

seq1  TCTCTGTGT-ATCTGTGTGTACTTGGTGCCCATGAAGAACAGAAGAAGGT  49
      ||||||||| ||||||||| |||  |||||||||||| ||||||||  | 
seq2  TCTCTGTGTAATCTGTGTG-ACT--GTGCCCATGAAG-ACAGAAGA--GA  44

seq1  ATCAGATTCCTCAGAACTGGAGTTACAAGTTGTTGTGAGCTGGCATATGT  99
       ||||| ||||| |||||| || |||||| ||||| |||   ||||||||
seq2  TTCAGA-TCCTC-GAACTGAAG-TACAAG-TGTTG-GAGGCTGCATATGT  89

seq1  GTGCTCTGAATCAAATCTGGATCATCGGCTCCACGAGTGAAAATTTCAAA  149
      |||||||| ||||||||| ||||||| ||| ||   ||||||| ||||||
seq2  GTGCTCTG-ATCAAATCT-GATCATC-GCT-CAGAGGTGAAAA-TTCAAA  134

seq1  GAATCAATAAACTTTTTAAAGTCAA-GTTTAATTAAAGTAAAAAAAAAAA  198
      | |||||| |||||||||||||||| ||||| |||||||     ||||||
seq2  G-ATCAAT-AACTTTTTAAAGTCAAGGTTTATTTAAAGT-----AAAAAA  177

seq1  AAAAAAAAAAAAAAGAAAGCCAACCCCAAACCCCACAGTACTCTATATAA  248
      || |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAAACAAGAAAGCCAACCCCAAACCCCACAGTACTCTATATAA  227

seq1  GAAAGTGGCAAAGCTGAACTACTTGGAGGAACATTGGGGTAAAAAGCTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGGCAAAGCTGAACTACTTGGAGGAACATTGGGGTAAAAAGCTGT  277

seq1  AATTCTTTTGTTAGTTAAAGTACTTTACAGATAGTGACATTGTAAACCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTTGTTAGTTAAAGTACTTTACAGATAGTGACATTGTAAACCCA  327

seq1  GAATGCAGTGTTTGTTTGTTTGTTTGTTTGTCTTTTGTTGCTTGGTTTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCAGTGTTTGTTTGTTTGTTTGTTTGTCTTTTGTTGCTTGGTTTTT  377

seq1  GTTTTTGTTTTTTCAGAATCATAGATTGCATCAGTGTCGGACTTCAGTCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTTTTCAGAATCATAGATTGCATCAGTGTCGGACTTCAGTCC  427

seq1  TCATCTTTGTCTTTGATTCATGGCATTCATGTCTAGCAAGACAACTGCGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTGTCTTTGATTCATGGCATTCATGTCTAGCAAGACAACTGCGC  477

seq1  CTTTCCTCTATCTGACTGGGATGATTTATTTGCATGTACTAACCCTGTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCTATCTGACTGGGATGATTTATTTGCATGTACTAACCCTGTAT  527

seq1  GTGAAAATGAAAAGAAAAGTTTATGTAGCCATCTTTGAAGATAGAAAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATGAAAAGAAAAGTTTATGTAGCCATCTTTGAAGATAGAAAAAA  577

seq1  AATTGTGCAAGTTCTTATATTTAAGACTATTGCTTGTTGGAATTAATGTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGCAAGTTCTTATATTTAAGACTATTGCTTGTTGGAATTAATGTC  627

seq1  ACAAACATCAGAACACCTAATGATTCAAAACTTTACGGTGAATATTTTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACATCAGAACACCTAATGATTCAAAACTTTACGGTGAATATTTTCT  677

seq1  TTTCGGTTTCCCCACACTGTCGTCTGTTTTGCCCTGCTGAGATAGTACAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGGTTTCCCCACACTGTCGTCTGTTTTGCCCTGCTGAGATAGTACAC  727

seq1  ACTCACACCCACAGACCTACTTCCTGACTATTTTTACATAACACTGGTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACACCCACAGACCTACTTCCTGACTATTTTTACATAACACTGGTTC  777

seq1  ACCTACTTGGGAAAGACTCCCCTCTTCGTACCAATGGGGAAAGTAAATTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTTGGGAAAGACTCCCCTCTTCGTACCAATGGGGAAAGTAAATTT  827

seq1  GTGGAGGAAGTCCTCACCGTCCCCCAGAATCCCTGAGCAGTGTCTGGCCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGAAGTCCTCACCGTCCCCCAGAATCCCTGAGCAGTGTCTGGCCA  877

seq1  CTCTTATCCGGAGAGCAGATGTCACAGTAGGGATGTTACTTTGCGCTGCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATCCGGAGAGCAGATGTCACAGTAGGGATGTTACTTTGCGCTGCA  927

seq1  GATGTGAACACAATGGGGATAATTGGAGCCCAGAGTGCCAGGAGCCACAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGAACACAATGGGGATAATTGGAGCCCAGAGTGCCAGGAGCCACAT  977

seq1  GCTATTCCACAACCACCAACTGCAAAATGCCTGTGACTGTTTCAATGGCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTCCACAACCACCAACTGCAAAATGCCTGTGACTGTTTCAATGGCA  1027

seq1  GCAGGGTCAAAGCCTTACTCATGCGTCTGACCCACTGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTCAAAGCCTTACTCATGCGTCTGACCCACTGAATTC  1069