BAC Information

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BAC

Clone NameB6Ng01-105E04
Chromosome3 (Build37)
Map Location 13,157,278 - 13,300,969
singlet/doubletdoublet
Overlap genenone
Upstream geneEG621965, LOC100039798, EG668033, LOC668037
Downstream geneLOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105E04.bB6Ng01-105E04.g
ACCDH913332DH913333
length2161,138
definitionDH913332|Mus musculus domesticus DNA, BAC clone: B6Ng01-105E04, 5' end.DH913333|Mus musculus domesticus DNA, BAC clone: B6Ng01-105E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,300,749 - 13,300,969)(13,157,278 - 13,158,433)
sequence
aacaagcaccattaagaattaccctcaaagatcattaatttcatgttaga
tactaccctacggttcatgtaatacactttaatttctcactggtattctt
taaatattatatatttattatataatatatatgtatgtatatataatatt
atatatatgtatatgtgtatatatatatatatatatatatatatatatat
atatatatatatatat
gaattcttttaattcagagctaaatgttattgtaactacatcaacactgg
tgtgcagaaaaagggtttgtggaatgacaatgggttcaggagtggcaggt
aactacagagtcccaggaagcaaagtcaggtcgcgtgattgcagtgaatg
agatgccatgcatatggtctgttgctagcttcccatcaatattgtcatta
tccagcttgaaaacactcaggtatagctttcaccacccaactttttaatc
ctgtgcaacttttatgcctcatctagtaagttttctccttacttttgtaa
tcaaatatttacactatgctctgtaatgatttattgttcttaaagactga
atttttcaagttatgcatgacaattagtttcacacattttgagtttttat
ttaatggatttcttttacagaaaaagggtcatactattgtttaaaatttt
acctaaacagctttatctgagaaagaattttacaaatgagaaataacata
atgttattgaaagcatcataggctgatcaaacagatttaaaggaataaag
tccaatccaattaaaacgtgatcttttaaagatagcttctttgagaaaga
atatagatgcctctctgaatgtgagaattgctgtcttatacaacagagac
acactgattgctccttgtcatcagaatctgtcatgactcctcagcaacca
acatgatggcattgtgtcatgttcaaggcttcacaccagcataacttaat
gaagttatctgacaacgctcctggcttcacaggaagagacaaggacagct
catgagatgacttcaatatatttaacgtctcctacaaagaaacaggggga
gaacaagagagaacatcttgaaaataagtccttagctttctttatagtgc
attcgttatctacattgtacctggaaacactatgtttctataggtccatt
tcctttacaaatgctggaaatttatctcaaaatttaaatttccttgtgta
aaagatggtgtggagtggttgaaaatatgaatatcagatgagagtaagat
gatggggtcagtgtaatcagcatacgcaacatcagttaaaatacagagtc
catacccttgactgtgtggaacagcccacctgatcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_13300749_13300969
seq2: B6Ng01-105E04.b_43_264 (reverse)

seq1  ATAT-TATATATATATATATATATATATATATATATATATATATATATAC  49
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATATATATAC  50

seq1  ACATATACATATATATAATATTATATATACATACATATATATTATATAAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATACATATATATAATATTATATATACATACATATATATTATATAAT  100

seq1  AAATATATAATATTTAAAGAATACCAGTGAGAAATTAAAGTGTATTACAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATAATATTTAAAGAATACCAGTGAGAAATTAAAGTGTATTACAT  150

seq1  GAACCGTAGGGTAGTATCTAACATGAAATTAATGATCTTTGAGGGTAATT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCGTAGGGTAGTATCTAACATGAAATTAATGATCTTTGAGGGTAATT  200

seq1  CTTAATGGTGCTTGTTGAATTC  221
      ||||||||||||||||||||||
seq2  CTTAATGGTGCTTGTTGAATTC  222

seq1: chr3_13157278_13158433
seq2: B6Ng01-105E04.g_67_1204

seq1  GAATTCTTTTAATTCAGAGCTAAATGTTATTGTAACTACATCAACACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAATTCAGAGCTAAATGTTATTGTAACTACATCAACACTGG  50

seq1  TGTGCAGAAAAAGGGTTTGTGGAATGACAATGGGTTCAGGAGTGGCAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGAAAAAGGGTTTGTGGAATGACAATGGGTTCAGGAGTGGCAGGT  100

seq1  AACTACAGAGTCCCAGGAAGCAAAGTCAGGTCGCGTGATTGCAGTGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACAGAGTCCCAGGAAGCAAAGTCAGGTCGCGTGATTGCAGTGAATG  150

seq1  AGATGCCATGCATATGGTCTGTTGCTAGCTTCCCATCAATATTGTCATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCATGCATATGGTCTGTTGCTAGCTTCCCATCAATATTGTCATTA  200

seq1  TCCAGCTTGAAAACACTCAGGTATAGCTTTCACCACCCAACTTTTTAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTTGAAAACACTCAGGTATAGCTTTCACCACCCAACTTTTTAATC  250

seq1  CTGTGCAACTTTTATGCCTCATCTAGTAAGTTTTCTCCTTACTTTTGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAACTTTTATGCCTCATCTAGTAAGTTTTCTCCTTACTTTTGTAA  300

seq1  TCAAATATTTACACTATGCTCTGTAATGATTTATTGTTCTTAAAGACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATTTACACTATGCTCTGTAATGATTTATTGTTCTTAAAGACTGA  350

seq1  ATTTTTCAAGTTATGCATGACAATTAGTTTCACACATTTTGAGTTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCAAGTTATGCATGACAATTAGTTTCACACATTTTGAGTTTTTAT  400

seq1  TTAATGGATTTCTTTTACAGAAAAAGGGTCATACTATTGTTTAAAATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGATTTCTTTTACAGAAAAAGGGTCATACTATTGTTTAAAATTTT  450

seq1  ACCTAAACAGCTTTATCTGAGAAAGAATTTTACAAATGAGAAATAACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAACAGCTTTATCTGAGAAAGAATTTTACAAATGAGAAATAACATA  500

seq1  ATGTTATTGAAAGCATCATAGGCTGATCAAACAGATTTAAAGGAATAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATTGAAAGCATCATAGGCTGATCAAACAGATTTAAAGGAATAAAG  550

seq1  TCCAATCCAATTAAAACGTGATCTTTTAAAGATAGCTTCTTTGAGAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCCAATTAAAACGTGATCTTTTAAAGATAGCTTCTTTGAGAAAGA  600

seq1  ATATAGATGCCTCTCTGAATGTGAGAATTGCTGTCTTATACAACAGAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGATGCCTCTCTGAATGTGAGAATTGCTGTCTTATACAACAGAGAC  650

seq1  ACACTGATTGCTCCTTGTCATCAGAATCTGTCATGACTCCTCAGCAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGATTGCTCCTTGTCATCAGAATCTGTCATGACTCCTCAGCAACCA  700

seq1  ACATGATGGCATTGTGTCATGTTCAAGGCTTCACACCAGCATAACTTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATGGCATTGTGTCATGTTCAAGGCTTCACACCAGCATAACTTAAT  750

seq1  GAAGTTATCTGACAACGCTCCTGGCTTCACAGGAAGAGACAAGGACAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTATCTGACAACGCTCCTGGCTTCACAGGAAGAGACAAGGACAGCT  800

seq1  CAGGAGATGACTTCAATATATTTAACGTCTCCTACAAAGAAACAGGGGGA  850
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGATGACTTCAATATATTTAACGTCTCCTACAAAGAAACAGGGGGA  850

seq1  GAACAAGAGAGAACATCTTGAAAATAAAGTCCTTAGCTTTCTTTTATAGT  900
      ||||||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  GAACAAGAGAGAACATCTTGAAAAT-AAGTCCTTAGCTTTC-TTTATAGT  898

seq1  GCATTCGTTATCTACATTGTACCTGGAAACACTATGTTTCTATAGGTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCGTTATCTACATTGTACCTGGAAACACTATGTTTCTATAGGTCCA  948

seq1  TTTCCTTTACAAATGCTGGAAAATTTATCTCAAAATTTAAATATTCCTTG  1000
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  TTTCCTTTACAAATGCTGG-AAATTTATCTCAAAATTTAAAT-TTCCTTG  996

seq1  TGTTACAGGATGGTGTGGAGTGGTGGAAAATATGATAATTCAAGATGAGA  1050
      || || | |||||||||||||||| |||||||||  |||   ||||||| 
seq2  TG-TAAAAGATGGTGTGGAGTGGTTGAAAATATG--AATATCAGATGAG-  1042

seq1  AGTAAAGAATGATTGGGGGCAGGTGAATCAGCAACAGCAAACTATCAAGT  1100
      |||||   |||| ||||| |||   ||||||||   ||||   ||| |||
seq2  AGTAA--GATGA-TGGGGTCAGTGTAATCAGCATACGCAA--CATC-AGT  1086

seq1  TAAGATAGCAGAGCTCATACCTTTGAGCTGTGTGAGAAGCAGCCCACAGG  1150
      ||| ||| |||||  |||||| |||| ||||||| ||| ||||||||  |
seq2  TAAAATA-CAGAGTCCATACCCTTGA-CTGTGTG-GAA-CAGCCCACCTG  1132

seq1  ATCCTC  1156
      ||||||
seq2  ATCCTC  1138