BAC Information

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BAC

Clone NameB6Ng01-105E20
Chromosome3 (Build37)
Map Location 147,163,879 - 147,335,554
singlet/doubletdoublet
Overlap genenone
Upstream geneGng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
Downstream geneLOC100040354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105E20.bB6Ng01-105E20.g
ACCDH913364DH913365
length938848
definitionDH913364|Mus musculus domesticus DNA, BAC clone: B6Ng01-105E20, 5' end.DH913365|Mus musculus domesticus DNA, BAC clone: B6Ng01-105E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,163,879 - 147,164,803)(147,334,702 - 147,335,554)
sequence
gaattctctggagttttaataaacctataatctcatttgatatttaacaa
cttctcagattatgtgaaatatcactgactttttatatgcaaatttcagt
tatattccaccatgaagtgtttgcactttttgtgtaaactctttgctcaa
aaatgttatggctcttccatttggagtcagttgtcttaggtaatgttctg
cccttcctaatctgttcttaccttgcttcttgggcattactgagctacta
caaacttaattgctacatttgtgatttgttctactaattctctttctttt
tgtagctgatagaacactctttccttaaaataaaatacttcagtaatctc
ctaaatgtgtgtagaaggaaagtggtatagttttccctccctatctccaa
acctgcaccctctcctttctacagaacaacacttgctttttagcctaaga
attattggctcagtccagcagtttgtcataaaatattttacatgacatcc
aggctttttcccagtgcttctatttcctgcagactctttaagatcttttt
aatatccttcttctcaaatccatcaatttccgtgttaggagagagaaggc
cttttgcaattaccttctctgtgtaatatttttctgacttcttttgaaag
catcttatcctgtattctacacttaatgtattcctttgaaactttagcct
atttttttttcttgggactatttaatagtattattttacacttcagtttt
catttttctagaaccctttactggttccctggaattcttttaacacctga
atagtttcactccaaaatataacctacattggaatccattttttcttttc
tgaaaattgttatgaatgaggtagcaactttgaacttttacctaattttt
ataccttttgataaattctatcaaaggtgggcattgtc
gaattctccatcgttccacttggtagagatttactaaagctgactaaagc
tgcttctcatgtttaacgtgagcaacaggggacttacactgccatttagg
gagataagaaacactaagaaatctgtaatgacggggaggaaggaatcagg
aaaaaaaagctttgtttacccttaggtctcatgcttacaaagaagagtga
gtgccctggatctaagactctcaaatccaaagatgaaattggtaagagaa
gtataatgtttggaattttaacatggaggtgtcatttaaggattgggatg
ataaaatcattagtgagtgactgtgctaaagaagtggtctctagacgcag
ctctgtcactctctctcagaagttgggaaatgaacgaagacagagatctt
gcaactgcaagaaggccatgtgaaggcagagacccaggattccgtgatgc
cacatgacactagaatgagagatcaaaccaatgctaccagagacccaaga
gacaaggcattggcattcctgctcagatggaaaggtatactagaactcag
gagcccaggaagaacacagctctgaggtaagacaatgtcccaatggaagg
gtacctgacacgcaggagtctgggaaccactcagctctgagaggaagcct
gcttagtagaggagttacagccgtgaggaaggacattcctgagttagctg
gagtgctacagtgtaacagctctactttgctggtcctcttcttttgtagt
tcaagttcagggcagggtatccccagctgtgctggttagctgaggaactt
cagtcccgctccagtttaactctcccatcttgctttcttgcttcaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_147163879_147164803
seq2: B6Ng01-105E20.b_34_971

seq1  GAATTCTCTGGAGTTTTAATAAACCTATAATCTCATTTGATATTTAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGAGTTTTAATAAACCTATAATCTCATTTGATATTTAACAA  50

seq1  CTTCTCAGATTATGTGAAATATCACTGACTTTTTATATGCAAATTTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGATTATGTGAAATATCACTGACTTTTTATATGCAAATTTCAGT  100

seq1  TATATTCCACCATGAAGTGTTTGCACTTTTTGTGTAAACTCTTTGCTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCCACCATGAAGTGTTTGCACTTTTTGTGTAAACTCTTTGCTCAA  150

seq1  AAATGTTATGGCTCTTCCATTTGGAGTCAGTTGTCTTAGGTAATGTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTATGGCTCTTCCATTTGGAGTCAGTTGTCTTAGGTAATGTTCTG  200

seq1  CCCTTCCTAATCTGTTCTTACCTTGCTTCTTGGGCATTACTGAGCTACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTAATCTGTTCTTACCTTGCTTCTTGGGCATTACTGAGCTACTA  250

seq1  CAAACTTAATTGCTACATTTGTGATTTGTTCTACTAATTCTCTTTCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTAATTGCTACATTTGTGATTTGTTCTACTAATTCTCTTTCTTTT  300

seq1  TGTAGCTGATAGAACACTCTTTCCTTAAAATAAAATACTTCAGTAATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTGATAGAACACTCTTTCCTTAAAATAAAATACTTCAGTAATCTC  350

seq1  CTAAATGTGTGTAGAAGGAAAGTGGTATAGTTTTCCCTCCCTATCTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGTGTGTAGAAGGAAAGTGGTATAGTTTTCCCTCCCTATCTCCAA  400

seq1  ACCTGCACCCTCTCCTTTCTACAGAACAACACTTGCTTTTTAGCCTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCACCCTCTCCTTTCTACAGAACAACACTTGCTTTTTAGCCTAAGA  450

seq1  ATTATTGGCTCAGTCCAGCAGTTTGTCATAAAATATTTTACATGACATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGGCTCAGTCCAGCAGTTTGTCATAAAATATTTTACATGACATCC  500

seq1  AGGCTTTTTCCCAGTGCTTCTATTTCCTGCAGACTCTTTAAGATCTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTTTCCCAGTGCTTCTATTTCCTGCAGACTCTTTAAGATCTTTTT  550

seq1  AATATCCTTCTTCTCAAATCCATCAATTTCCGTGTTAGGAGAGAGAAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCTTCTTCTCAAATCCATCAATTTCCGTGTTAGGAGAGAGAAGGC  600

seq1  CTTTTGCAATTACCTTCTCTGTGTAATATTTTTCTGACTTCTTTTGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCAATTACCTTCTCTGTGTAATATTTTTCTGACTTCTTTTGAAAG  650

seq1  CATCTTATCCTGTATTCTACACTTAATGTATTCCTTTGAAACTTTAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTATCCTGTATTCTACACTTAATGTATTCCTTTGAAACTTTAGCCT  700

seq1  ATTTTTTTTTCTT-GGACTATTTAATAGTATTA-TTTACACTTCAGTTTT  748
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  ATTTTTTTTTCTTGGGACTATTTAATAGTATTATTTTACACTTCAGTTTT  750

seq1  CA-TTTTCTAG-ACCCTTTACTGGTTCCCT-GAATTCTTTTAACACCTGA  795
      || |||||||| |||||||||||||||||| |||||||||||||||||||
seq2  CATTTTTCTAGAACCCTTTACTGGTTCCCTGGAATTCTTTTAACACCTGA  800

seq1  ATAG-TTCACTCCAAAATATAA-CTACATT-GTATCCA-TTTTTCTTTTC  841
      |||| ||||||||||||||||| ||||||| | ||||| |||||||||||
seq2  ATAGTTTCACTCCAAAATATAACCTACATTGGAATCCATTTTTTCTTTTC  850

seq1  TGAAAA-TGTTATG-ATGAGGTAGCAACTTTGAACTTTTACCTAA-TTTT  888
      |||||| ||||||| |||||||||||||||||||||||||||||| ||||
seq2  TGAAAATTGTTATGAATGAGGTAGCAACTTTGAACTTTTACCTAATTTTT  900

seq1  ATA-CTTTTGATATAGTTCTATCAAAGG-GGGCATTGTC  925
      ||| ||||||||| | |||||||||||| ||||||||||
seq2  ATACCTTTTGATA-AATTCTATCAAAGGTGGGCATTGTC  938

seq1: chr3_147334702_147335554
seq2: B6Ng01-105E20.g_69_916 (reverse)

seq1  ACCTAGAAGCAAAGAAAGCAAGATAGGAAGAAGTTAAAACTGGAGCGGGA  50
      |||| ||||| ||||||||||||| |||   |||| ||||||||||||||
seq2  ACCT-GAAGC-AAGAAAGCAAGATGGGA--GAGTT-AAACTGGAGCGGGA  45

seq1  CTGAGGTTCCTCAGCTAACCAGCACAGCTGGGGATACCCTGCCCTGAACC  100
      |||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGAAGTTCCTCAGCTAACCAGCACAGCTGGGGATACCCTGCCCTGAACT  95

seq1  TGAACTACAAAAGAAGAGGACCAGCAAAGTAGAGCTGTTACACTGTAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTACAAAAGAAGAGGACCAGCAAAGTAGAGCTGTTACACTGTAGCA  145

seq1  CTCCAGCTAACTCAGGAATGTCCTTCCTCACGGCTGTAACTCCTCTACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTAACTCAGGAATGTCCTTCCTCACGGCTGTAACTCCTCTACTA  195

seq1  AGCAGGCTTCCTCTCAGAGCTGAGTGGTTCCCAGACTCCTGCGTGTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCTTCCTCTCAGAGCTGAGTGGTTCCCAGACTCCTGCGTGTCAGG  245

seq1  TACCCTTCCATTGGGACATTGTCTTACCTCAGAGCTGTGTTCTTCCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTCCATTGGGACATTGTCTTACCTCAGAGCTGTGTTCTTCCTGGG  295

seq1  CTCCTGAGTTCTAGTATACCTTTCCATCTGAGCAGGAATGCCAATGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGTTCTAGTATACCTTTCCATCTGAGCAGGAATGCCAATGCCTT  345

seq1  GTCTCTTGGGTCTCTGGTAGCATTGGTTTGATCTCTCATTCTAGTGTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTGGGTCTCTGGTAGCATTGGTTTGATCTCTCATTCTAGTGTCAT  395

seq1  GTGGCATCACGGAATCCTGGGTCTCTGCCTTCACATGGCCTTCTTGCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATCACGGAATCCTGGGTCTCTGCCTTCACATGGCCTTCTTGCAGT  445

seq1  TGCAAGATCTCTGTCTTCGTTCATTTCCCAACTTCTGAGAGAGAGTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGATCTCTGTCTTCGTTCATTTCCCAACTTCTGAGAGAGAGTGACA  495

seq1  GAGCTGCGTCTAGAGACCACTTCTTTAGCACAGTCACTCACTAATGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCGTCTAGAGACCACTTCTTTAGCACAGTCACTCACTAATGATTT  545

seq1  TATCATCCCAATCCTTAAATGACACCTCCATGTTAAAATTCCAAACATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCCCAATCCTTAAATGACACCTCCATGTTAAAATTCCAAACATTA  595

seq1  TACTTCTCTTACCAATTTCATCTTTGGATTTGAGAGTCTTAGATCCAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTCTTACCAATTTCATCTTTGGATTTGAGAGTCTTAGATCCAGGG  645

seq1  CACTCACTCTTCTTTGTAAGCATGAGACCTAAGGGTAAACAAAGCTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACTCTTCTTTGTAAGCATGAGACCTAAGGGTAAACAAAGCTTTTT  695

seq1  TTTCCTGATTCCTTCCTCCCCGTCATTACAGATTTCTTAGTGTTTCTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGATTCCTTCCTCCCCGTCATTACAGATTTCTTAGTGTTTCTTAT  745

seq1  CTCCCTAAATGGCAGTGTAAGTCCCCTGTTGCTCACGTTAAACATGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTAAATGGCAGTGTAAGTCCCCTGTTGCTCACGTTAAACATGAGAA  795

seq1  GCAGCTTTAGTCAGCTTTAGTAAATCTCTACCAAGTGGAACGATGGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTTAGTCAGCTTTAGTAAATCTCTACCAAGTGGAACGATGGAGAA  845

seq1  TTC  853
      |||
seq2  TTC  848