BAC Information

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BAC

Clone NameB6Ng01-105J05
Chromosome3 (Build37)
Map Location 89,745,373 - 89,746,325
singlet/doubletsinglet
Overlap geneAtp8b2
Upstream geneDap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra
Downstream geneLOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105J05.bB6Ng01-105J05.g
ACCDH913560DH913561
length949814
definitionDH913560|Mus musculus domesticus DNA, BAC clone: B6Ng01-105J05, 5' end.DH913561|Mus musculus domesticus DNA, BAC clone: B6Ng01-105J05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttagatatttagaaactgcagccagcagcctagattgagtttg
aagaagagaaaggagtgagcggggcactgtagttctgggctagcgagtgc
tactgtagtgcttctactgtagtgctgctactgtagtgctgcgactgtag
tgcttctgctgtagtgcttctgctgtagtgcttctactgtagtgctgcta
ctgtagtgctgtgactgtagtgcttctactgtagtgcttctgctgtagtg
cttctactgtagtgctgttactgtagtgcttctactgtagtgctgctact
gtagtgcttcgctacctggaaaaggcaggcacacagcaggcttggggtag
aggagacggtccatcacatgggcctttttagcctggagattccttgactg
agatggttaaagaaacaggactagggtttcaggagagagttggagagcag
agacagatttggagattagcatttgagtggcagacagacagaagttgagg
gtgtgtggggtttgagtttgaggacatggaaccatgagaaatagcaatgg
ggaagcgaggagatccccactgtcaacttcctgactcctgtccttcaggg
aatgcccagaacaccctggcccagcccaccgtgtggctcaccatcgcgct
caccacggctgtctgcatcatgcctgtggttgccttccgcttcctcaggc
ttagcctgaagccggatctctccgacacggtgagaagcctggcaaggctg
gccgcaggccttggggggcagctgcattgtgacagaaaaagcctcttttt
gcttgggtgctgtagagctgtgtctgggctgcgggactctgggggcacgt
gctgcacctggctacagaagttcctgagctgatctgccctggtgtctggg
tcctgcaccaggtggtgcctgtcttcgtagcggatattgaagacccccc
gaattcagtaataaggttacctattctgtaacattcaaatttactcctag
tagagatggtgaaactaattaggcattacaaagaacagagctagaatagc
tccagggctggtctgcagggtgattacttaggacagtagccagtctcatc
cagacaagggaatacacaatggtctagctaataggtgggtttaacatgta
agagttagggactcccactgagacaggaatcttcactacagccaggtata
gcaggctacactgcatgttagaagcaagttggtgaattcttctgacaaat
ggagattctccacagatacttaaaacaacagccaagttaaactgatacaa
gaatttaccaaggcctaggaaatagggggtttgtagtgttacattattca
tgagaaggtctgctagagcagaatcccctggtgcaagctttcacaaggct
caaaggagtagcacaaattgtgactagggtgtgaaatccttacctgtcat
tagctgaccctagacagggctgttttatctttactgtaaacattacctgg
ttcctggaagtccttttgaagtcattcctttgttttgtgtcaggtaactt
caatgtgctttgcctgctgtgacatcctacccctttgttttctgtattat
ataagactggtgttcactttgtgacaatacatttcagatttctacacaac
ctcctgtgttgattttgtctgtcatttgcgactccttgtccacttgaaac
aagagaccggtctacgcatactgggacctataatgggtcttcgtcacttg
tgtttttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89745373_89746325
seq2: B6Ng01-105J05.b_43_991 (reverse)

seq1  GGGGGGTCCTTCAGTATCCGCTCACGACGACAGGCACCACCTTGGTGCAA  50
      ||||||| ||||| |||||||| |||| ||||||||||||| |||||| |
seq2  GGGGGGT-CTTCAATATCCGCT-ACGAAGACAGGCACCACC-TGGTGC-A  46

seq1  GGACCCAGAGCACCAGGGCAGATCAGCTCAGGAACTTCTGTAGCCAGGTG  100
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCAGA-CACCAGGGCAGATCAGCTCAGGAACTTCTGTAGCCAGGTG  95

seq1  CAGCACGTGCCCCCAGAGTCCCGCAGCCCAGACACAGCTCTACAGCACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACGTGCCCCCAGAGTCCCGCAGCCCAGACACAGCTCTACAGCACCC  145

seq1  AAGC-AAAAGAGGCTTTTTCTGTCACATTGCAGCTGCCCCCCAAGGCCTG  199
      |||| |||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGCAAAAAGAGGCTTTTTCTGTCACAATGCAGCTGCCCCCCAAGGCCTG  195

seq1  CGGCCAGCCTTGCCAGGCTTCTCACCGTGTCGGAGAGATCCGGCTTCAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCAGCCTTGCCAGGCTTCTCACCGTGTCGGAGAGATCCGGCTTCAGG  245

seq1  CTAAGCCTGAGGAAGCGGAAGGCAACCACAGGCATGATGCAGACAGCCGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCTGAGGAAGCGGAAGGCAACCACAGGCATGATGCAGACAGCCGT  295

seq1  GGTGAGCGCGATGGTGAGCCACACGGTGGGCTGGGCCAGGGTGTTCTGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCGCGATGGTGAGCCACACGGTGGGCTGGGCCAGGGTGTTCTGGG  345

seq1  CATTCCCTGAAGGACAGGAGTCAGGAAGTTGACAGTGGGGATCTCCTCGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCTGAAGGACAGGAGTCAGGAAGTTGACAGTGGGGATCTCCTCGC  395

seq1  TTCCCCATTGCTATTTCTCATGGTTCCATGTCCTCAAACTCAAACCCCAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCATTGCTATTTCTCATGGTTCCATGTCCTCAAACTCAAACCCCAC  445

seq1  ACACCCTCAACTTCTGTCTGTCTGCCACTCAAATGCTAATCTCCAAATCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTCAACTTCTGTCTGTCTGCCACTCAAATGCTAATCTCCAAATCT  495

seq1  GTCTCTGCTCTCCAACTCTCTCCTGAAACCCTAGTCCTGTTTCTTTAACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGCTCTCCAACTCTCTCCTGAAACCCTAGTCCTGTTTCTTTAACC  545

seq1  ATCTCAGTCAAGGAATCTCCAGGCTAAAAAGGCCCATGTGATGGACCGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGTCAAGGAATCTCCAGGCTAAAAAGGCCCATGTGATGGACCGTC  595

seq1  TCCTCTACCCCAAGCCTGCTGTGTGCCTGCCTTTTCCAGGTAGCGAAGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTACCCCAAGCCTGCTGTGTGCCTGCCTTTTCCAGGTAGCGAAGCA  645

seq1  CTACAGTAGCAGCACTACAGTAGAAGCACTACAGTAACAGCACTACAGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTAGCAGCACTACAGTAGAAGCACTACAGTAACAGCACTACAGTA  695

seq1  GAAGCACTACAGCAGAAGCACTACAGTAGAAGCACTACAGTCACAGCACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACTACAGCAGAAGCACTACAGTAGAAGCACTACAGTCACAGCACT  745

seq1  ACAGTAGCAGCACTACAGTAGAAGCACTACAGCAGAAGCACTACAGCAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGCAGCACTACAGTAGAAGCACTACAGCAGAAGCACTACAGCAGA  795

seq1  AGCACTACAGTCGCAGCACTACAGTAGCAGCACTACAGTAGAAGCACTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTACAGTCGCAGCACTACAGTAGCAGCACTACAGTAGAAGCACTAC  845

seq1  AGTAGCACTCGCTAGCCCAGAACTACAGTGCCCCGCTCACTCCTTTCTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCACTCGCTAGCCCAGAACTACAGTGCCCCGCTCACTCCTTTCTCT  895

seq1  TCTTCAAACTCAATCTAGGCTGCTGGCTGCAGTTTCTAAATATCTAAAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAACTCAATCTAGGCTGCTGGCTGCAGTTTCTAAATATCTAAAGA  945

seq1  ATTC  953
      ||||
seq2  ATTC  949