BAC Information

Click to search

BAC

Clone NameB6Ng01-105K20
Chromosome12 (Build37)3 (Build37)
Map Location 58,431,207 - 58,432,28041,059,096 - 41,059,737
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21, AU021838
Downstream geneLOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761, Sstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105K20.bB6Ng01-105K20.g
ACCDH913632DH913633
length1,078813
definitionDH913632|Mus musculus domesticus DNA, BAC clone: B6Ng01-105K20, 5' end.DH913633|Mus musculus domesticus DNA, BAC clone: B6Ng01-105K20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(58,431,207 - 58,432,280)(41,059,096 - 41,059,737)
sequence
gaattcttcatttttgtctctttaatgtaacgactttttatactacagta
ctcctcaaaccactgtaagctttatgtagaaatctcacctaccttgtctt
ctgctaagtatctcagatatacaaatcagataacgtaactatattatatt
ttcatctggctttatataattctttgaaactaaaattcaagctaataaca
tagttatcaaaatattttaaatattaccaggagtcagccaatgtaaattt
tatcatcaatccaatgacactttaattttatgtttaatagttatgaaaat
ttgaaatattcctactgaattttttggaaatgacagtgatcagctcatag
tctcgttcctgtgcaaaagcttcacactgtgctgttgtgcagtacatggc
gccatgtaaagttttcctaggtaaccaggacaattgtgacagcaatgcta
ccagtgctcgagcactttctctgtgaccataaggaccaaaattgaattat
agatttctgctgtgcttttaaaatgagtacaaaacattaggttacttttg
attttttgtttcaaacaagctcttattaagcagtatgtttgaaatgtaat
ttattttggagaaactctacaaaggacaagaatatttgttcttctggcgg
tgaattgaagcagctactagacgtctgtgagctgctcttttgtgtctaat
tagggtcactagatcttagtagtgattcatagtatgcccgtgtgtacaga
cttagcttttcctgctatgtgtttttctgttaaatcgctgtttaaaaaca
accactttttctggttgtagtgattttttttttttaatccggtggtgaca
tttggaacaactttgcagcatagttaccagttgttctttattgggtttcc
tgtcatcctttttgtgataactattaaatctcaagagacaacatgagcgg
gcctcagaagacagaaaatagaactgtaactttttagtaatataaaatac
atgtgaatggcttttaaatctctgtcatttagtggtacctaattccagtt
gtcttttaatttaccttggaattaatca
gaattctttgtttagctctgtaccccattttttaatggatttatttgaat
ttctggagtccagcttcttgagctctttgtatatattggatattagtccc
ctctcagatttaggattggtaaaaatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgccctacagaagctttgcaatttta
tgaggtcccatttgccaattcttgatcttacagcacaggccattgctgtt
ctgtttaggaatttttcccctgtgcccatatcttcgaggctttccccact
ttctcctctataaatttcagtgtctctggttttatctttgatccacttag
acttgagctttgtacaaggagaaaagaacagatcaattcgcattcttcta
catgataaccaccagttgagccagcaccatttgttgaaaatgctgtcttt
tttccactggatggttttagctcccttgtcaaagatcaagtgaccatagg
tgtgtgggttcatttctgggtcttcaattctattccattgatctacctgt
ctgtcgctgtaccagtaccatgcagttttttatcacaattgctctgtagt
acagcttgaggtcaggaatggtgattcccccagaggttcttttattgttg
agaatagtttttgctatccaaggttttttattattccagatgaatttgca
aattgccctttctaactcagtgaagaattgagtgaaattttgatggggat
tgcattgaatctgttgattgctttctgcactgaagcttttattcttctgt
acctatactgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_58431207_58432280
seq2: B6Ng01-105K20.b_42_1119

seq1  GAATTCTTCATTTTTGTCTCTTTAATGTAACGACTTTTTATACTACAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATTTTTGTCTCTTTAATGTAACGACTTTTTATACTACAGTA  50

seq1  CTCCTCAAACCACTGTAAGCTTTATGTAGAAATCTCACCTACCTTGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAAACCACTGTAAGCTTTATGTAGAAATCTCACCTACCTTGTCTT  100

seq1  CTGCTAAGTATCTCAGATATACAAATCAGATAACGTAACTATATTATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAGTATCTCAGATATACAAATCAGATAACGTAACTATATTATATT  150

seq1  TTCATCTGGCTTTATATAATTCTTTGAAACTAAAATTCAAGCTAATAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTGGCTTTATATAATTCTTTGAAACTAAAATTCAAGCTAATAACA  200

seq1  TAGTTATCAAAATATTTTAAATATTACCAGGAGTCAGCCAATGTAAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATCAAAATATTTTAAATATTACCAGGAGTCAGCCAATGTAAATTT  250

seq1  TATCATCAATCCAATGACACTTTAATTTTATGTTTAATAGTTATGAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCAATCCAATGACACTTTAATTTTATGTTTAATAGTTATGAAAAT  300

seq1  TTGAAATATTCCTACTGAATTTTTTGGAAATGACAGTGATCAGCTCATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATATTCCTACTGAATTTTTTGGAAATGACAGTGATCAGCTCATAG  350

seq1  TCTCGTTCCTGTGCAAAAGCTTCACACTGTGCTGTTGTGCAGTACATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTTCCTGTGCAAAAGCTTCACACTGTGCTGTTGTGCAGTACATGGC  400

seq1  GCCATGTAAAGTTTTCCTAGGTAACCAGGACAATTGTGACAGCAATGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTAAAGTTTTCCTAGGTAACCAGGACAATTGTGACAGCAATGCTA  450

seq1  CCAGTGCTCGAGCACTTTCTCTGTGACCATAAGGACCAAAATTGAATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTCGAGCACTTTCTCTGTGACCATAAGGACCAAAATTGAATTAT  500

seq1  AGATTTCTGCTGTGCTTTTAAAATGAGTACAAAACATTAGGTTACTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTGCTGTGCTTTTAAAATGAGTACAAAACATTAGGTTACTTTTG  550

seq1  ATTTTTTGTTTCAAACAAGCTCTTATTAAGCAGTATGTTTGAAATGTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGTTTCAAACAAGCTCTTATTAAGCAGTATGTTTGAAATGTAAT  600

seq1  TTATTTTGGAGAAACTCTACAAAGGACAAGAATATTTGTTCTTCTGGCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGGAGAAACTCTACAAAGGACAAGAATATTTGTTCTTCTGGCGG  650

seq1  TGAATTGAAGCAGCTACTAGACGTCTGTGAGCTGCTC-TTTGTGTCTAAT  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGAATTGAAGCAGCTACTAGACGTCTGTGAGCTGCTCTTTTGTGTCTAAT  700

seq1  TAGGGTCACTAGATCTTAGTAGTGATTCATAGTATGCCCGTGTGTACAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTCACTAGATCTTAGTAGTGATTCATAGTATGCCCGTGTGTACAGA  750

seq1  CTTAGCTTTTCCTGCTATGTGTTTTTCTGTTAAATCGCTGTTTAAAAACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTTTTCCTGCTATGTGTTTTTCTGTTAAATCGCTGTTTAAAAACA  800

seq1  ACCACTTTTTCTGGTTGTAGTGA-TTTTTTTTTTTAATCCGGTGGTGACA  848
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACCACTTTTTCTGGTTGTAGTGATTTTTTTTTTTTAATCCGGTGGTGACA  850

seq1  TTTGGAACAACTTTGCAGCATAGTTACCAGTTG-TCTTTATTGTGTTTCC  897
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  TTTGGAACAACTTTGCAGCATAGTTACCAGTTGTTCTTTATTGGGTTTCC  900

seq1  TGTCATCCTTTTTGTGATAACTATTAAATCTCAAGAGACAACATGAGCGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCCTTTTTGTGATAACTATTAAATCTCAAGAGACAACATGAGCGG  950

seq1  GCCTCAGAAGACAGAAAATAGAACTGTAACTTTTTAGTATATATTAAAAT  997
      ||||||||||||||||||||||||||||||||||||||| ||| ||||||
seq2  GCCTCAGAAGACAGAAAATAGAACTGTAACTTTTTAGTA-ATA-TAAAAT  998

seq1  A-ACATGGATTGCTTTTAAATCTCTGTCATTTAGTGATACCT-ATCACAG  1045
      | |  || || ||||||||||||||||||||||||| ||||| ||  |||
seq2  ACATGTGAATGGCTTTTAAATCTCTGTCATTTAGTGGTACCTAATTCCAG  1048

seq1  TTTGTCTTTTAATTTAC--TTGAATTAATCA  1074
       ||||||||||||||||  | ||||||||||
seq2  -TTGTCTTTTAATTTACCTTGGAATTAATCA  1078

seq1: chr3_41059096_41059737
seq2: B6Ng01-105K20.g_69_703 (reverse)

seq1  CCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATT  50
      ||||||| ||||||||||| |||||||| ||||| |||||||||||||||
seq2  CCTCTGGGGGAATCACCATTCCTGACCTCAAGCTGTACTACAGAGCAATT  50

seq1  GTGAT-AAAAACTGCATGGTACTGGTATAGTGACAGACAAGCAGACCAAT  99
      ||||| ||||||||||||||||||||| || |||||||| | ||| ||||
seq2  GTGATAAAAAACTGCATGGTACTGGTACAGCGACAGACAGGTAGATCAAT  100

seq1  GGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTG  149
      ||||||||||||||||| |||||| ||| |||||||||||||||||||||
seq2  GGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTG  150

seq1  ATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTT  199
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTT  200

seq1  CAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAA  249
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  CAACAAATGGTGCTGGCTCAACTGGTGGTTATCATGTAGAAGAATGCGAA  250

seq1  TTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAG  299
      ||||||   || | ||||||||||| ||| |||| |||||||||||||| 
seq2  TTGATCTGTTCTTTTCTCCTTGTACAAAGCTCAAGTCTAAGTGGATCAA-  299

seq1  GAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGG  349
             | ||||||||||||||||||||| |||||||||||||||||||
seq2  -------AGATAAAACCAGAGACACTGAAATTTATAGAGGAGAAAGTGGG  342

seq1  GAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAG  399
      | ||||||| |||||||||| ||||||||||||||||||  | |||||||
seq2  G-AAAGCCTCGAAGATATGGGCACAGGGGAAAAATTCCTAAACAGAACAG  391

seq1  CAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAA  449
      ||||||| |||||||||||||  ||||| | ||||||||||||||| |||
seq2  CAATGGCCTGTGCTGTAAGATCAAGAATTGGCAAATGGGACCTCATAAAA  441

seq1  CTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-C  498
       ||||||||||||| | ||||||||||||||||||||||||||||||| |
seq2  TTGCAAAGCTTCTGTAGGGCAAAAGACACCGTCAATAAGACAAAAAGGCC  491

seq1  ACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGAC  548
      ||||||||||||||||||||| |||||| |||||||||| || |||||||
seq2  ACCAACAGATTGGGAAAGGATTTTTACCAATCCTAAATCTGAGAGGGGAC  541

seq1  TAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCA  598
      ||||||||||||||||  |||| ||||||||| |||| |||||||| |||
seq2  TAATATCCAATATATACAAAGAGCTCAAGAAGCTGGACTCCAGAAATTCA  591

seq1  AATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  642
      |||||  ||||||||||||||||  |||||||||||||||||||
seq2  AATAAATCCATTAAAAAATGGGGTACAGAGCTAAACAAAGAATT  635