BAC Information

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BAC

Clone NameB6Ng01-105L11
Chromosome3 (Build37)
Map Location 17,537,910 - 17,538,763
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040034, LOC100040059, EG383936, LOC622737
Downstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105L11.b
ACCDH913662
length856
definitionDH913662|Mus musculus domesticus DNA, BAC clone: B6Ng01-105L11, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaccacagggaaaggttccaaggcagataagtctggacaggactc
caaaggatcatagaaaatctggagaaatactgatcagggagccatgtgta
acgattttaataggaattgggatacaattatacaatatgcccctatcgaa
tataaatcttgagcacaatttatataattttctacaaacaaggcatgaga
gacatttctgaaggaattttaatggcagaataaattcaaaaagcatccca
caccttgaagagtgaaaacaacatgaatatataaaaataatagaaggcca
gtatctcagaaggtgcaagcaagcaaccaatcgatatacattacaatttc
atcagtaacatgggctacaaagttaaattctggtttcaatagcaaatatt
acaggagcctacaaatgtttaagagagatttaccaagaacaaagaaagca
taaagtataaagtttagaaaaaattttaataggtgagagatttgtctgtg
tgtgtgtgtttgtgtgtgtgtttgttatacttatttcaaatacacctgtc
tcacaatgaataatttttactcccaatggatttccttcgagtagcatcta
tcatctaccaatgtacaacacccacatctagtttatcaagaaatgattgt
ggatactgcctttaatatcgcgaagaactaacctgtgcttgacttaggga
aaatctgatagaaacttatgaggagggggggggctctttatcaaattcgt
ctgacctggacctccgaaatctcttgatgactgaaccgccaaaccaaaaa
gatacttatctcttcccctgaacccctggctcatctcaagcagaggactg
cctgtt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_17537910_17538763
seq2: B6Ng01-105L11.b_39_894

seq1  GAATTCAAGACAGGGAAAGGTTAGAAGGCAGAAAAGTCTGGACAAGGACT  50
      |||||||  |||||||||||||  |||||||| |||||||||| ||||||
seq2  GAATTCACCACAGGGAAAGGTTCCAAGGCAGATAAGTCTGGAC-AGGACT  49

seq1  CCAAAGGATCATAGAAAATTAGGAGAAATACTAATCAGGGAGCCATGTGT  100
      |||||||||||||||||||  ||||||||||| |||||||||||||||||
seq2  CCAAAGGATCATAGAAAATCTGGAGAAATACTGATCAGGGAGCCATGTGT  99

seq1  AACGATTTTAAAAGGAATTGGGATACAATTATACAGTATGCCAATATCAA  150
      ||||||||||| ||||||||||||||||||||||| ||||||  |||| |
seq2  AACGATTTTAATAGGAATTGGGATACAATTATACAATATGCCCCTATCGA  149

seq1  ATATAAATCTTGAGCAGAATTTATAGAATTTTCTACAAACAAGGCATGAG  200
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  ATATAAATCTTGAGCACAATTTATATAATTTTCTACAAACAAGGCATGAG  199

seq1  AGACATTTCTGAAGGAATTTTAATGGCAGAATAAATTCAAAAAGCATCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTCTGAAGGAATTTTAATGGCAGAATAAATTCAAAAAGCATCCC  249

seq1  ACACATTGAAGAGTGAAAACAACATGAATATATAAAAATAATAGAAGGCC  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTGAAGAGTGAAAACAACATGAATATATAAAAATAATAGAAGGCC  299

seq1  AGTATCTCAGAAGGTGCAAGCAAGCAACCAATCGATATACATTACAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTCAGAAGGTGCAAGCAAGCAACCAATCGATATACATTACAATTT  349

seq1  CATCAGTAACATGGGCTACAAAGTTAAATTCTGGTTTCAATAGCAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTAACATGGGCTACAAAGTTAAATTCTGGTTTCAATAGCAAATAT  399

seq1  TACAGGAGCCTACAAATGTTTAAGAGAGATTTAGCAAGAACAAAGAAAGC  450
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TACAGGAGCCTACAAATGTTTAAGAGAGATTTACCAAGAACAAAGAAAGC  449

seq1  ATAAAGTATAAAGTTTAGAAAAAATTTTAATAGGTGAGAGATTTGTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTATAAAGTTTAGAAAAAATTTTAATAGGTGAGAGATTTGTCTGT  499

seq1  GTGTGTGTGTTTGTGTGTGTGTTTGTTATACTTATTTCAAATACACGTGT  550
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTGTGTGTGTTTGTGTGTGTGTTTGTTATACTTATTTCAAATACACCTGT  549

seq1  CTCAAAATGAATAATTTTTACTCCCAGTGGATTTCCTTCAGGTAGCATCT  600
      |||| ||||||||||||||||||||| ||||||||||||  |||||||||
seq2  CTCACAATGAATAATTTTTACTCCCAATGGATTTCCTTCGAGTAGCATCT  599

seq1  ATCATCTACCAATGTACAACACCCACATCTAGTTTATCAAGAAATGATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTACCAATGTACAACACCCACATCTAGTTTATCAAGAAATGATTG  649

seq1  TGGATACTGCCTTTAATATCACGAAGAACTAACCTGTGCTTGAGTTAGGG  700
      |||||||||||||||||||| |||||||||||||||||||||| ||||||
seq2  TGGATACTGCCTTTAATATCGCGAAGAACTAACCTGTGCTTGACTTAGGG  699

seq1  AAAAGCTGATAGAAACTTAGGAGGA--GGGGGGCCAGACCAGCAGTTTCA  748
      |||| |||||||||||||| |||||  |||||| |     | ||  ||| 
seq2  AAAATCTGATAGAAACTTATGAGGAGGGGGGGGGCTCTTTATCAAATTCG  749

seq1  ACTGACCTGGACCCCCGAGATCTCTTGAGGACTGAACCACC-AACCAGGC  797
       |||||||||||| |||| ||||||||| ||||||||| || |||||   
seq2  TCTGACCTGGACCTCCGAAATCTCTTGATGACTGAACCGCCAAACCAAAA  799

seq1  AGCATAC--ACCAGCTTGTGTGAAGACCCTGGCACATATAAAGCAGAGGA  845
      || ||||  | |   |    ||||  ||||||| ||| | ||||||||||
seq2  AG-ATACTTATCTCTTCCCCTGAA-CCCCTGGCTCATCTCAAGCAGAGGA  847

seq1  CTGCCTGTT  854
      |||||||||
seq2  CTGCCTGTT  856