BAC Information

Click to search

BAC

Clone NameB6Ng01-106B04
Chromosome3 (Build37)
Map Location 110,920,395 - 110,921,448
singlet/doubletsinglet
Overlap genenone
Upstream geneNtng1, LOC100043181, LOC100043183, Prmt6, LOC100043190
Downstream geneLOC668712, LOC625585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106B04.bB6Ng01-106B04.g
ACCDH913915DH913916
length1,2521,045
definitionDH913915|Mus musculus domesticus DNA, BAC clone: B6Ng01-106B04, 5' end.DH913916|Mus musculus domesticus DNA, BAC clone: B6Ng01-106B04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggccaatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaacagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacataaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagccacaaataatataaaatatctcggcg
tgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtcc
atgaagaaagaaattaaagaagatctcagaagatggaaagaactcccatg
ctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccattaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
gaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtggaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctgg
cacaactggttgtatcatgtagaagaatgcgaatcgatccatacttatct
cctgtactaagtcaatctagtggatcaggaacttcacataaaaccagaga
cactgaaacttatagagaaaagtggggaaaagctgagaattgggcacagg
gaaaattcctgaacagaacagcatgcttgtgcgagatcgagattgacaat
tggacttatgaactccaggttcggcaggcaagactgtctttagacaaaga
acccacgaactggaaggaatcttacatatcctaaatcaagataaggggac
at
gaattccaggagcagtgattccatgactgtatgactaaaattgtctggat
cattcatggaatacaaaattctgtacttttgcctcagtcttttttttttt
ttttgagattataaattgcattattttcccttctctgttctaaccacaaa
ctctttcaccttatacaccattattacagaaagaacacaaccgtacagaa
tgcagagctgtggatccatatcccaaaggatatatttccaacaaaactcc
caccacctaaggctcaagactcgttacaataaatagtggaactgtttgaa
aaagcccaaagaatagaaaggataattctgcttttttgtttgtttgtttg
tttctgctttcatgcaaacaccaattaggaaaatacgttagccagtcaag
gagttctcaataagtctttaccatgattttcagtaagtagcagaaaatat
agggaaaatatggcatatcagaaaaaaatcaatagaagacagatttctaa
tacttaaaatcccaatatgtgagattgataggaagagaacagaagtatat
ttacaagacagtatgcacagagttagagaccttttaggtggactaagctt
agaagcttaatatgtctatgtagattttgaaatgttttaatcacataaag
aaatgacttcaggcttcagaaaaacatcctagagttcagaaaaaaatggg
aaaaggtgccaaagaaatcaggatgagtgtaatagaggagttgaatgaaa
aggtgaactaagtaataatgtcagaacaatgagaaaacctgggaagctgt
tgagtgaatatcaatttggggtttccagactggcaatttcttcgatgaaa
tcataaaattaatgcagaaaagtgtatacatcagatatggacgtaattgg
tcaaagtgacttttcatattcttctaattttctgataatatacatattac
atgtctgtttcccttccccctctaaatctccatatatttctctcattttt
cttcaaatcttatgccctctcttccactaactgctagtgttacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_110920395_110921448
seq2: B6Ng01-106B04.g_66_1110

seq1  GAATTCCAGGAGCAGTGATTCCATGACTGTATGACTAAAATTGTCTGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAGCAGTGATTCCATGACTGTATGACTAAAATTGTCTGGAT  50

seq1  CATTCATGGAATACAAAATTCTGTACTTTTGCCTCAGTCTTTTTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATGGAATACAAAATTCTGTACTTTTGCCTCAGTCTTTTTTTTTTT  100

seq1  TTTTGAGATTATAAATTGCATTATTTTCCCTTCTCTGTTCTAACCACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGATTATAAATTGCATTATTTTCCCTTCTCTGTTCTAACCACAAA  150

seq1  CTCTTTCACCTTATACACCATTATTACAGAAAGAACACAACCGTACAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCACCTTATACACCATTATTACAGAAAGAACACAACCGTACAGAA  200

seq1  TGCAGAGCTGTGGATCCATATCCCAAAGGATATATTTCCAACAAAACTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGCTGTGGATCCATATCCCAAAGGATATATTTCCAACAAAACTCC  250

seq1  CACCACCTAAGGCTCAAGACTCGTTACAATAAATAGTGGAACTGTTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCTAAGGCTCAAGACTCGTTACAATAAATAGTGGAACTGTTTGAA  300

seq1  AAAGCCCAAAGAATAGAAAGGATAATTCTGCTTTTTTGTTTGTTTGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCAAAGAATAGAAAGGATAATTCTGCTTTTTTGTTTGTTTGTTTG  350

seq1  TTTCTGCTTTCATGCAAACACCAATTAGGAAAATACGTTAGCCAGTCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTTTCATGCAAACACCAATTAGGAAAATACGTTAGCCAGTCAAG  400

seq1  GAGTTCTCAATAAGTCTTTACCATGATTTTCAGTAAGTAGCAGAAAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTCAATAAGTCTTTACCATGATTTTCAGTAAGTAGCAGAAAATAT  450

seq1  AGGGAAAATATGGCATATCAGAAAAAAATCAATAGAAGACAGATTTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAATATGGCATATCAGAAAAAAATCAATAGAAGACAGATTTCTAA  500

seq1  TACTTAAAATCCCAATATGTGAGATTGATAGGAAGAGAACAGAAGTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAAATCCCAATATGTGAGATTGATAGGAAGAGAACAGAAGTATAT  550

seq1  TTACAAGACAGTATGCACAGAGTTAGAGACCTTTTAGGTGGACTAAGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGACAGTATGCACAGAGTTAGAGACCTTTTAGGTGGACTAAGCTT  600

seq1  AGAAGCTTAATATGTCTATGTAGATTTTGAAATGTTTTAATCACATAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTAATATGTCTATGTAGATTTTGAAATGTTTTAATCACATAAAG  650

seq1  AAATGACTTCAGGCTTCAGAAAAACATCCTAGAGTTCAGAAAAAAATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTTCAGGCTTCAGAAAAACATCCTAGAGTTCAGAAAAAAATGGG  700

seq1  AAAAGGTGCCAAAGAAATCAGGATGAGTGTAATAGAGGAGTTGAATGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTGCCAAAGAAATCAGGATGAGTGTAATAGAGGAGTTGAATGAAA  750

seq1  AGGTGAACTAAGTAATAATGTCAGAACAATGAGAAAACCT-GGAAGCTGT  799
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGGTGAACTAAGTAATAATGTCAGAACAATGAGAAAACCTGGGAAGCTGT  800

seq1  TGAGTGAATATCAATTTGGGGTTTCCAGACTGGCAATTTCTTCGATGAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAATATCAATTTGGGGTTTCCAGACTGGCAATTTCTTCGATGAAA  850

seq1  TCATAAAATTAATGCAGAAAAGTGTATACATCAGGATATGGACGTAATTG  899
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCATAAAATTAATGCAGAAAAGTGTATACATCA-GATATGGACGTAATTG  899

seq1  GTCAAAGTGACTTTTCATATTCTTCTAATTTTTCTGATAATTATTACATT  949
      |||||||||||||||||||||||||||| ||||||||||||   |||| |
seq2  GTCAAAGTGACTTTTCATATTCTTCTAA-TTTTCTGATAAT--ATACA-T  945

seq1  ATTACATGTCTGTTTTCCCTTCCCCCTCTAAATTCTCCCATATATTTCTC  999
      |||||||||||| ||||||||||||||||||| ||| |||||||||||||
seq2  ATTACATGTCTG-TTTCCCTTCCCCCTCTAAA-TCT-CCATATATTTCTC  992

seq1  TTCATTTTTCTTCAAATC-TATGCCCTCTCTTTCCACTAACTGCTAGTGT  1048
       ||||||||||||||||| ||||||||||| |||||||||||||||||| 
seq2  -TCATTTTTCTTCAAATCTTATGCCCTCTC-TTCCACTAACTGCTAGTG-  1039

seq1  TTACAA  1054
      ||||||
seq2  TTACAA  1045