BAC Information

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BAC

Clone NameB6Ng01-106F16
Chromosome3 (Build37)
Map Location 120,785,290 - 120,983,060
singlet/doubletdoublet
Overlap gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780
Upstream genenone
Downstream geneAlg14, Ppia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106F16.bB6Ng01-106F16.g
ACCDH914120DH914121
length1,1811,145
definitionDH914120|Mus musculus domesticus DNA, BAC clone: B6Ng01-106F16, 5' end.DH914121|Mus musculus domesticus DNA, BAC clone: B6Ng01-106F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,981,886 - 120,983,060)(120,785,290 - 120,786,453)
sequence
gaattctcagaggtgctgcttaaaggtcagtgtcgtttcctcttggaact
tttgtgtaaataatgcgtacacttaacaacataacaacatgactaaatag
cgcttactgctttgagagcgtgtgtgtgcatgtgcgcatgtgcgcacgca
tgctgtactcccatgtagcacacgagtggagggcagaaggcgctgctggg
catcctcttcatcatgctcagtcatccttctccaggcgagcctctccctg
aacctgggtggagctcacaggctgagagtcagcaaagtcccagtgacccc
ctgtgcctcggcctcctacactgctgggttacgggccgtggcacagtgcc
tgccttgttccgtgggtgctgggatctgaactcaggcatttgtcttttca
gccgcttgcctgttcagcatgtagcaacattaggtgccctgtccattttg
aagccattctcttttactacatgaaattttaatgagaaagctgatgggct
tgttaacttgccaacagttaaaaactataaaacttggatggcaactcctt
tctgacatgaagatcgcctcctcctctttgccagtactcaggtgggttca
gcggatcctttccactttgagttgaacctgggaaatgaaccttggaaagc
agtttagcagtttgtaataattactacatgtctctcaatgagacctcggt
tttaaacatcttggaagaagtccgattttcctctcctccatcagtgttat
cctctcctctccttaatctttacccagcgactatcagctctgcccttact
cttggccagtaaaccaatctcaaatcttcctcattaaaaaaagaaaaggc
caaatcaataatgccctccctcagccggtctgcctcagcttggcttctgt
cacctgcacgcccaaccacttagcagcggcaccgccgtctttacacacag
catctctccatttgtagtgtttttttactcccaaggctactttctgtgca
gtcagactatgtcacggggttagagctggagcacagagcaagctggtgta
taagggcgttgagaatgtaagtcggcctgaacaagggtctcctgtaagtt
ggctgatggacgatacagggcttaccgtgtagtgttaatttctgtcgggg
gaggtcaccaatccttcggcctcagcctact
gaattccaggcctcaggaagctcaggtcctaagtgcaggtgccaggcccc
agctcactagttgtccagaaagcctgaatagaaaagcctaagaattagcg
ttttaataatgactcttctatgtcttggagcagaggctctcagccttcct
aaggctgcagtcctttaatacagtccctcatgttgtggtggccccccatc
ataaaaccatttccactgctatctcatgtcattttgctactgttatggat
tgcaatataaatagaggtcacaggatggtctcaggcgaccccttgtgaaa
gggtcattcaacccccaaaggggtcacaatccacagggtaagaaccactg
tcctatagaataagaaacaggatagagacctgtcttccagggaaaggaca
ccagcaagctggggctgatgggtgacatcataagagagtgattagcattt
ataaagtcctgggctccggtcccagaactgaaaaaccaggcatggtaaca
aatgcttaaaatccactcaggtggaaggaggtggcttagaaatttacagt
catccttaggggcaaggggaactgagactaacctgtctcaacaaataaaa
ggaagagaaacagaagggaggagatggcagaggaggaggagagaaggaga
atttaagttgtggaaaatactacattgcaattctactctataaaggcact
ataatattatgtgggcatgtttccttaccccagatacctaatgtggaacc
aaggcttgaatttattctacttcttaacatatttttcaaatctcatcctt
ctcacgtactcttgctgttcctctcattttggacataagcactgtaagcc
agtggctgcccacttagaaaacctaaaactagataccttgagaagtttta
ccagagccaacaagggataattattagagtatgaactggggtgcaataca
caattaactataatgtacctgctacagaaatccccaggacatgggtttag
ggcagtcccccccccatttctctgcatttcaatgggtgggaattttatac
aataaatgaagtgtttgcatctgggactgagaggcatggcagatcatatg
caaacctcaagagcgaataagatctgccttagtggggactataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_120981886_120983060
seq2: B6Ng01-106F16.b_49_1229 (reverse)

seq1  AGTAGGCTGAGGCCGAAGGA-TGGTGACCTCCCCGGACAGGAATATACA-  48
      |||||||||||||||||||| ||||||||||||| ||||| |||  ||| 
seq2  AGTAGGCTGAGGCCGAAGGATTGGTGACCTCCCCCGACAGAAATTAACAC  50

seq1  TACA--GTGAGACCTTGTATCTGTCAATCAGCC-ACTTACAGGAGACCTT  95
      ||||  || || || |||||| ||| ||||||| ||||||||||||||  
seq2  TACACGGTAAG-CCCTGTATC-GTCCATCAGCCAACTTACAGGAGACC-C  97

seq1  TTGTTCAGGCCGACTTACA-TCTCAACG-CCTAATACA-CAGCTTTGCTC  142
      ||||||||||||||||||| |||||||| ||| ||||| |||| ||||||
seq2  TTGTTCAGGCCGACTTACATTCTCAACGCCCTTATACACCAGC-TTGCTC  146

seq1  TGTGCT-CAGCTTCTATCCCGTGACATAGTCTGACTGCACAG-AAGTAGC  190
      |||||| |||||   | ||||||||||||||||||||||||| |||||||
seq2  TGTGCTCCAGCTCTAACCCCGTGACATAGTCTGACTGCACAGAAAGTAGC  196

seq1  CTTGGGAGT-AGAAAACACTACCAAATGGAGAGATGCTGTGTGTAAAGAC  239
      ||||||||| | ||||||||| ||||||||||||||||||||||||||||
seq2  CTTGGGAGTAAAAAAACACTA-CAAATGGAGAGATGCTGTGTGTAAAGAC  245

seq1  GGCGGTGCCGCTGCTAAGTGGTTGGGCGTGCAGGTGACAGAAGCCAAGCT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGTGCCGCTGCTAAGTGGTTGGGCGTGCAGGTGACAGAAGCCAAGCT  295

seq1  GAGGCAGACCGGCTGAGGGAGGGCATTATTGATTTGGCCTTTTCTTTTTT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGACCGGCTGAGGGAGGGCATTATTGATTTGGCCTTTTCTTTTTT  345

seq1  TAATGAGGAAGATTTGAGATTGGTTTACTGGCCAAGAGTAAGGGCAGAGC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGGAAGATTTGAGATTGGTTTACTGGCCAAGAGTAAGGGCAGAGC  395

seq1  TGATAGTCGCTGGGTAAAGATTAAGGAGAGGAGAGGATAACACTGATGGA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTCGCTGGGTAAAGATTAAGGAGAGGAGAGGATAACACTGATGGA  445

seq1  GGAGAGGAAAATCGGACTTCTTCCAAGATGTTTAAAACCGAGGTCTCATT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAAAATCGGACTTCTTCCAAGATGTTTAAAACCGAGGTCTCATT  495

seq1  GAGAGACATGTAGTAATTATTACAAACTGCTAAACTGCTTTCCAAGGTTC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACATGTAGTAATTATTACAAACTGCTAAACTGCTTTCCAAGGTTC  545

seq1  ATTTCCCAGGTTCAACTCAAAGTGGAAAGGATCCGCTGAACCCACCTGAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCAGGTTCAACTCAAAGTGGAAAGGATCCGCTGAACCCACCTGAG  595

seq1  TACTGGCAAAGAGGAGGAGGCGATCTTCATGTCAGAAAGGAGTTGCCATC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCAAAGAGGAGGAGGCGATCTTCATGTCAGAAAGGAGTTGCCATC  645

seq1  CAAGTTTTATAGTTTTTAACTGTTGGCAAGTTAACAAGCCCATCAGCTTT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTTATAGTTTTTAACTGTTGGCAAGTTAACAAGCCCATCAGCTTT  695

seq1  CTCATTAAAATTTCATGTAGTAAAAGAGAATGGCTTCAAAATGGACAGGG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAAAATTTCATGTAGTAAAAGAGAATGGCTTCAAAATGGACAGGG  745

seq1  CACCTAATGTTGCTACATGCTGAACAGGCAAGCGGCTGAAAAGACAAATG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAATGTTGCTACATGCTGAACAGGCAAGCGGCTGAAAAGACAAATG  795

seq1  CCTGAGTTCAGATCCCAGCACCCACGGAACAAGGCAGGCACTGTGCCACG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTCAGATCCCAGCACCCACGGAACAAGGCAGGCACTGTGCCACG  845

seq1  GCCCGTAACCCAGCAGTGTAGGAGGCCGAGGCACAGGGGGTCACTGGGAC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTAACCCAGCAGTGTAGGAGGCCGAGGCACAGGGGGTCACTGGGAC  895

seq1  TTTGCTGACTCTCAGCCTGTGAGCTCCACCCAGGTTCAGGGAGAGGCTCG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGACTCTCAGCCTGTGAGCTCCACCCAGGTTCAGGGAGAGGCTCG  945

seq1  CCTGGAGAAGGATGACTGAGCATGATGAAGAGGATGCCCAGCAGCGCCTT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGAAGGATGACTGAGCATGATGAAGAGGATGCCCAGCAGCGCCTT  995

seq1  CTGCCCTCCACTCGTGTGCTACATGGGAGTACAGCATGCGTGCGCACATG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCCACTCGTGTGCTACATGGGAGTACAGCATGCGTGCGCACATG  1045

seq1  CGCACATGCACACACACGCTCTCAAAGCAGTAAGCGCTATTTAGTCATGT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACATGCACACACACGCTCTCAAAGCAGTAAGCGCTATTTAGTCATGT  1095

seq1  TGTTATGTTGTTAAGTGTACGCATTATTTACACAAAAGTTCCAAGAGGAA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGTTGTTAAGTGTACGCATTATTTACACAAAAGTTCCAAGAGGAA  1145

seq1  ACGACACTGACCTTTAAGCAGCACCTCTGAGAATTC  1175
      ||||||||||||||||||||||||||||||||||||
seq2  ACGACACTGACCTTTAAGCAGCACCTCTGAGAATTC  1181

seq1: chr3_120785290_120786453
seq2: B6Ng01-106F16.g_68_1212

seq1  GAATTCCAGGCCTCAGGAAGCTCAGGTCCTAAGTGCAGGTGCCAGGCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCTCAGGAAGCTCAGGTCCTAAGTGCAGGTGCCAGGCCCC  50

seq1  AGCTCACTAGTTGTCCAGAAAGCCTGAATAGAAAAGCCTAAGAATTAGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACTAGTTGTCCAGAAAGCCTGAATAGAAAAGCCTAAGAATTAGCG  100

seq1  TTTTAATAATGACTCTTCTATGTCTTGGAGCAGAGGCTCTCAGCCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATAATGACTCTTCTATGTCTTGGAGCAGAGGCTCTCAGCCTTCCT  150

seq1  AAGGCTGCAGTCCTTTAATACAGTCCCTCATGTTGTGGTGGCCCCCCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGCAGTCCTTTAATACAGTCCCTCATGTTGTGGTGGCCCCCCATC  200

seq1  ATAAAACCATTTCCACTGCTATCTCATGTCATTTTGCTACTGTTATGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCATTTCCACTGCTATCTCATGTCATTTTGCTACTGTTATGGAT  250

seq1  TGCAATATAAATAGAGGTCACAGGATGGTCTCAGGCGACCCCTTGTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATATAAATAGAGGTCACAGGATGGTCTCAGGCGACCCCTTGTGAAA  300

seq1  GGGTCATTCAACCCCCAAAGGGGTCACAATCCACAGGGTAAGAACCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATTCAACCCCCAAAGGGGTCACAATCCACAGGGTAAGAACCACTG  350

seq1  TCCTATAGAATAAGAAACAGGATAGAGACCTGTCTTCCAGGGAAAGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATAGAATAAGAAACAGGATAGAGACCTGTCTTCCAGGGAAAGGACA  400

seq1  CCAGCAAGCTGGGGCTGATGGGTGACATCATAAGAGAGTGATTAGCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAGCTGGGGCTGATGGGTGACATCATAAGAGAGTGATTAGCATTT  450

seq1  ATAAAGTCCTGGGCTCCGGTCCCAGAACTGAAAAACCAGGCATGGTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTCCTGGGCTCCGGTCCCAGAACTGAAAAACCAGGCATGGTAACA  500

seq1  AATGCTTAAAATCCACTCAGGTGGAAGGAGGTGGCTTAGAAATTTACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTAAAATCCACTCAGGTGGAAGGAGGTGGCTTAGAAATTTACAGT  550

seq1  CATCCTTAGGGGCAAGGGGAACTGAGACTAACCTGTCTCAACAAATAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTAGGGGCAAGGGGAACTGAGACTAACCTGTCTCAACAAATAAAA  600

seq1  GGAAGAGAAACAGAAGGGAGGAGATGGCAGAGGAGGAGGAGAGAAGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAAACAGAAGGGAGGAGATGGCAGAGGAGGAGGAGAGAAGGAGA  650

seq1  ATTTAAGTTGTGGAAAATACTACATTGCAATTCTACTCTATAAAGGCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGTTGTGGAAAATACTACATTGCAATTCTACTCTATAAAGGCACT  700

seq1  ATAATATTATGTGGGCATG-TTCCTTACCCCAGATACCTAATGTGGAACC  749
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATAATATTATGTGGGCATGTTTCCTTACCCCAGATACCTAATGTGGAACC  750

seq1  AAGGCTTGAATTTATTCTACTTCTTAACATATTTTTCAAATCTCATCCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTGAATTTATTCTACTTCTTAACATATTTTTCAAATCTCATCCTT  800

seq1  CTCACGTACTCTTGCTGTTCCCTCTCA-TTTGGACATAAGCACTGTAAGC  848
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  CTCACGTACTCTTGCTGTT-CCTCTCATTTTGGACATAAGCACTGTAAGC  849

seq1  CAGTGGCTGCCCACTTAGAAAACCTAAAACTAGATACCTTGAGAAGTTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGTGGCTGCCCACTTAGAAAACCTAAAACTAGATACCTTGAGAAGTTTT  899

seq1  CCAAGAGCAAACAAAGGGATAATTTATTAGAGTATGAACTGGGGTGC-AT  947
       | ||||| ||| ||||||||| |||||||||||||||||||||||| ||
seq2  ACCAGAGCCAAC-AAGGGATAA-TTATTAGAGTATGAACTGGGGTGCAAT  947

seq1  ACACAATTAACTATAAATGTACCTGCTTACAGAAATCCCCAAGACATTGG  997
      |||||||||||||| ||||||||||| |||||||||||||| ||||| ||
seq2  ACACAATTAACTAT-AATGTACCTGC-TACAGAAATCCCCAGGACATGGG  995

seq1  TTTAGGGCAGTCCCCCCCCCCATTTCTCTGCATTTCAATGGTGTGGAATA  1047
      ||||||||||| |||||||||||||||||||||||||||||   ||||| 
seq2  TTTAGGGCAGT-CCCCCCCCCATTTCTCTGCATTTCAATGGGTGGGAATT  1044

seq1  TTATACAAATAAATG-AGTGTTCTGCATCCTGGGGCACTGGAGAGGCCAT  1096
      |||||| |||||||| |||||| ||||| |||||  ||| |||||| |||
seq2  TTATAC-AATAAATGAAGTGTT-TGCAT-CTGGG--ACT-GAGAGG-CAT  1087

seq1  GGAAAGATCAATAATGCAAAAACTTTCAAGAGCGAATAAAGGTTTGTGCC  1146
      ||  ||||||   |||||||     ||||||||||||||     | ||||
seq2  GG-CAGATCA--TATGCAAA---CCTCAAGAGCGAATAA---GATCTGCC  1128

seq1  CTAGTGGGGATCTATAGA  1164
       ||||||||| |||||||
seq2  TTAGTGGGGA-CTATAGA  1145