BAC Information

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BAC

Clone NameB6Ng01-106K23
Chromosome3 (Build37)
Map Location 57,793,495 - 57,937,705
singlet/doubletdoublet
Overlap geneEG433594, LOC100040216
Upstream geneLOC666585, Tm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2
Downstream gene4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106K23.bB6Ng01-106K23.g
ACCDH914351DH914352
length1,152532
definitionDH914351|Mus musculus domesticus DNA, BAC clone: B6Ng01-106K23, 5' end.DH914352|Mus musculus domesticus DNA, BAC clone: B6Ng01-106K23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,936,547 - 57,937,705)(57,793,495 - 57,794,032)
sequence
gaattctaggaagaggcataaagtcactgagagttggggttgtttcattt
gggtatggctggagcctattctggtagtctattactaatcactctaaaaa
tttaggacttaaagcaacagccattcagtctcctgacttagtggttggga
tctcaggtagttgatctcagctggacactttttcttctctctaaattggt
gcaagtcactgagtgatgctcagcaagtagataggctggaccaaggcagc
ttcacctacatgtctgatgccttagcatcaaaattcacagagcagggatt
agcagggtctctcaacgacagccacatgcgccttctccagcatgaagaat
tcaccggggctggatggatattgtacgatggctcagagtattcagagaaa
gagttccatagagagaagcctgcagctcctgaagccagcgcctgggagaa
ggcagactagtatgtgaaccaatgcatcactgtatagattcttgggcaaa
ggggatttggatctgcctccaggttggattgtcaccaaagactctgtagt
taccaggacaatggtccatggttactctgacaacatttattttatagacc
caccacagacaggtaagatagctgaacacagggatgaacaggtatttcta
tgtgtcgctctaggaaaagcaatgtagcaaattgataatggaacgaggaa
cacaatcgacaaagtgcactcctgttaggtttgaggttgtagagaatgaa
aaataaaagttttccctccactttttagtgctcttagtgttttgttgggc
ttacagattgaattgacataaaacagattaggagagaaaaaaacatattt
aattatatacacacacagcacacaggattcccacaaaaatctaagactca
aacaagcctggtgattccaccttacacagcatcttgagctatgtgaagaa
aagggacttatggcttctagaggtggtaaagaagaggcactgaccatgag
gaagactgcatggtgcctgccagtagcacagtctgtctttatgtttagca
ggaacttaatttagctgtctttgtaaggtgtaattctttacaaaagctat
cttttagagctgcctttgtctgtaagttcttagaataatcatctgaagat
ac
tattagagaaaacatgggcacagtggtgatggtggaattgtatattgtct
aagtaatgatggggttaagtcattaaaggttgggtggaggatggagggca
tctggttctagaatgtaagtggttcttacttgattaacatttctccattt
tgtttaacagttaaaaaaataggaaggggtgactggtgaggtagcagtga
gggtgccatgctctttagactgttttcggctaactagggctgttgacatc
tttgggggacccaagaaagatgaatgctgaccaaggccaggaagagcaag
ctgttttacttgctgtccaggctctgagaaaccatctggggctagggagg
tgcaggccacattagaacagtttgtagtctttgattgattggaaatctgc
tgaaatgtatgtattagggccagaaggcaaagttaaagagtttagggaaa
tttttttttaccttggatatacatttgaaacttccagtagtgggatgagt
atagtcccaagaccaggagagaaagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_57936547_57937705
seq2: B6Ng01-106K23.b_47_1198 (reverse)

seq1  GTATTTTCAGATGATTATTCTAAGAAACTACAGACAAAGGCAGCTCTAAA  50
      |||| |||||||||||||||||||||  ||||||||||||||||||| ||
seq2  GTATCTTCAGATGATTATTCTAAGAACTTACAGACAAAGGCAGCTCT-AA  49

seq1  AAGATAGCCTTTGTAAAAGAATTTACA-CTTACAAAGACAGCTAAATTAA  99
      |||||||| ||||| |||||| ||||| ||||||||||||||||||||||
seq2  AAGATAGCTTTTGT-AAAGAA-TTACACCTTACAAAGACAGCTAAATTAA  97

seq1  GTTCCTGCTAAACATAAAGACAGACTGTGCTACCTGGCAGGCACCATGCA  149
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTTCCTGCTAAACATAAAGACAGACTGTGCTA-CTGGCAGGCACCATGCA  146

seq1  GTCCTTCCTCCATTGGTCAGTGCCTCTTCTTTACCACCTCTAGAAGCCCT  199
      || |||||||   ||||||||||||||||||||||||||||||||||| |
seq2  GT-CTTCCTC--ATGGTCAGTGCCTCTTCTTTACCACCTCTAGAAGCCAT  193

seq1  AAGTCCCCTTTTCTTCACATAGCTCAAGATGCTGTGTAAGGTGGAATCAC  249
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGT-CCCTTTTCTTCACATAGCTCAAGATGCTGTGTAAGGTGGAATCAC  242

seq1  CAGGCTTGTTTGAGTCTTAGATTTTTGTGGGAATCCTGTGTGCTGTGTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTGTTTGAGTCTTAGATTTTTGTGGGAATCCTGTGTGCTGTGTGT  292

seq1  GTATATAATTAAATATGTTTTTTTCTCTCCTAATCTGTTTTATGTCAATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAATTAAATATGTTTTTTTCTCTCCTAATCTGTTTTATGTCAATT  342

seq1  CAATCTGTAAGCCCAACAAAACACTAAGAGCACTAAAAAGTGGAGGGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGTAAGCCCAACAAAACACTAAGAGCACTAAAAAGTGGAGGGAAA  392

seq1  ACTTTTATTTTTCATTCTCTACAACCTCAAACCTAACAGGAGTGCACTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATTTTTCATTCTCTACAACCTCAAACCTAACAGGAGTGCACTTT  442

seq1  GTCGATTGTGTTCCTCGTTCCATTATCAATTTGCTACATTGCTTTTCCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGATTGTGTTCCTCGTTCCATTATCAATTTGCTACATTGCTTTTCCTA  492

seq1  GAGCGACACATAGAAATACCTGTTCATCCCTGTGTTCAGCTATCTTACCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGACACATAGAAATACCTGTTCATCCCTGTGTTCAGCTATCTTACCT  542

seq1  GTCTGTGGTGGGTCTATAAAATAAATGTTGTCAGAGTAACCATGGACCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGGTGGGTCTATAAAATAAATGTTGTCAGAGTAACCATGGACCAT  592

seq1  TGTCCTGGTAACTACAGAGTCTTTGGTGACAATCCAACCTGGAGGCAGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGTAACTACAGAGTCTTTGGTGACAATCCAACCTGGAGGCAGAT  642

seq1  CCAAATCCCCTTTGCCCAAGAATCTATACAGTGATGCATTGGTTCACATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCCCCTTTGCCCAAGAATCTATACAGTGATGCATTGGTTCACATA  692

seq1  CTAGTCTGCCTTCTCCCAGGCGCTGGCTTCAGGAGCTGCAGGCTTCTCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTGCCTTCTCCCAGGCGCTGGCTTCAGGAGCTGCAGGCTTCTCTC  742

seq1  TATGGAACTCTTTCTCTGAATACTCTGAGCCATCGTACAATATCCATCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAACTCTTTCTCTGAATACTCTGAGCCATCGTACAATATCCATCCA  792

seq1  GCCCCGGTGAATTCTTCATGCTGGAGAAGGCGCATGTGGCTGTCGTTGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGGTGAATTCTTCATGCTGGAGAAGGCGCATGTGGCTGTCGTTGAG  842

seq1  AGACCCTGCTAATCCCTGCTCTGTGAATTTTGATGCTAAGGCATCAGACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTGCTAATCCCTGCTCTGTGAATTTTGATGCTAAGGCATCAGACA  892

seq1  TGTAGGTGAAGCTGCCTTGGTCCAGCCTATCTACTTGCTGAGCATCACTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTGAAGCTGCCTTGGTCCAGCCTATCTACTTGCTGAGCATCACTC  942

seq1  AGTGACTTGCACCAATTTAGAGAGAAGAAAAAGTGTCCAGCTGAGATCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTTGCACCAATTTAGAGAGAAGAAAAAGTGTCCAGCTGAGATCAA  992

seq1  CTACCTGAGATCCCAACCACTAAGTCAGGAGACTGAATGGCTGTTGCTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGAGATCCCAACCACTAAGTCAGGAGACTGAATGGCTGTTGCTTT  1042

seq1  AAGTCCTAAATTTTTAGAGTGATTAGTAATAGACTACCAGAATAGGCTCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTAAATTTTTAGAGTGATTAGTAATAGACTACCAGAATAGGCTCC  1092

seq1  AGCCATACCCAAATGAAACAACCCCAACTCTCAGTGACTTTATGCCTCTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATACCCAAATGAAACAACCCCAACTCTCAGTGACTTTATGCCTCTT  1142

seq1  CCTAGAATTC  1159
      ||||||||||
seq2  CCTAGAATTC  1152

seq1: chr3_57793495_57794032
seq2: B6Ng01-106K23.g_66_603

seq1  GAATTCTATTAGAGAAAACATGGGCACAGTGGTGATGGTGGAATTGTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTAGAGAAAACATGGGCACAGTGGTGATGGTGGAATTGTATA  50

seq1  TTGTCTAAGTAATGATGGGGTTAAGTCATTAAAGGTTGGGTGGAGGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAAGTAATGATGGGGTTAAGTCATTAAAGGTTGGGTGGAGGATGG  100

seq1  AGGGCATCTGGTTCTAGAATGTAAGTGGTTCTTACTTGATTAACATTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATCTGGTTCTAGAATGTAAGTGGTTCTTACTTGATTAACATTTCT  150

seq1  CCATTTTGTTTAACAGTTAAAAAAATAGGAAGGGGTGACTGGTGAGGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGTTTAACAGTTAAAAAAATAGGAAGGGGTGACTGGTGAGGTAG  200

seq1  CAGTGAGGGTGCCATGCTCTTTAGACTGTTTTCGGCTAACTAGGGCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGGGTGCCATGCTCTTTAGACTGTTTTCGGCTAACTAGGGCTGTT  250

seq1  GACATCTTTGGGGGACCCAAGAAAGATGAATGCTGACCAAGGCCAGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTTTGGGGGACCCAAGAAAGATGAATGCTGACCAAGGCCAGGAAG  300

seq1  AGCAAGCTGTTTTACTTGCTGTCCAGGCTCTGAGAAACCATCTGGGGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCTGTTTTACTTGCTGTCCAGGCTCTGAGAAACCATCTGGGGCTA  350

seq1  GGGAGGTGCAGGCCACATTAGAACAGTTTGTAGTCTTTGATTGATTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTGCAGGCCACATTAGAACAGTTTGTAGTCTTTGATTGATTGGAA  400

seq1  ATCTGCTGAAATGTATGTATTAGGGCCAGAAGGCAAAGTTAAAGAGTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTGAAATGTATGTATTAGGGCCAGAAGGCAAAGTTAAAGAGTTTA  450

seq1  GGGAAATTTTTTTTTACCTTGGATATACATTTGAAACTTCCAGTAGTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATTTTTTTTTACCTTGGATATACATTTGAAACTTCCAGTAGTGGG  500

seq1  ATGAGTATAGTCCCAAGACCAGGAGAGAAAGAGAGAGA  538
      ||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTATAGTCCCAAGACCAGGAGAGAAAGAGAGAGA  538