BAC Information

Click to search

BAC

Clone NameB6Ng01-106L07
Chromosome3 (Build37)
Map Location 49,159,728 - 49,339,311
singlet/doubletdoublet
Overlap gene4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579
Upstream gene1700018B24Rik, LOC100039404, EG666230
Downstream geneLOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469, Slc7a11, EG621304
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106L07.bB6Ng01-106L07.g
ACCDH914367DH914368
length1,124830
definitionDH914367|Mus musculus domesticus DNA, BAC clone: B6Ng01-106L07, 5' end.DH914368|Mus musculus domesticus DNA, BAC clone: B6Ng01-106L07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,159,728 - 49,160,865)(49,338,483 - 49,339,311)
sequence
gaattcattcttcaatacatccagagaaacaagaaggcagtgggtataga
aaccaagaaacatcttctccaactcctccagaacaaatgagaagacaaat
atttcagacaataccacccattgtctgcttggacagatgctacctcttat
gcttgtgagtttcattttggttttctacagctgtcctatttcccataatt
tctctgaacctttgttctaggcaaattatttcatcaaacagatgaatgta
tagataacctatttgtgatggtaagacacttttaaaatagaagaaaaata
ccactgaaactagagacttctaattaaaaaaaaatgaaaagaaatagtat
tcccatgtttttcactgatttcagcaaagactcaaactcaccagtttgtg
gggcaaaacaaatttttggcaatgcccactgattctcctactataaatcc
cttaagctgtattatgactccatcttactctagagtctactttggtatca
ctgcctctgagattactcaatctcataatgagaaatatctatagacctct
atttgatataatcagtgaattagatatgcacattgttctttgctatgtat
tgatctttttatattgactttataaaattgcagctaatatgtcttagtct
attttaaatatgctactagatttccattgaaatattcaattatcgtccag
catctattttatcaatatgcctgtgccagaaatttatgctgaatgtgaac
aagtttatcatattagacaaatgagcatactatactccctattgcttagg
tattttagagcagaattttttgtcatcagtgactgtaatcatgtaatcag
ctgaaagtgagcaaatgtggagaaaatatgggtgtggccatgatttttac
agagagaaacccgagaagaccgattgaaattttcttcagtactctaatgt
gacagcgtttttagataaagagaatggaaaattagagtagaaataaggaa
attaaagtctcagcattacagtggaaaaagaaagctttcttaaaacacaa
tacagatgcacatagatccatgacatacagtagttaaatagtgatttgat
tctgaagagaaatatcccatagta
gaattccatgatttagttgcattgcaattaaggtaaagattgtgtatata
ttggaaggttttcatgcatagaatatccttttgtgaaaaaagcatattaa
aatctttattttaaaaacagtgtttgcatctttacactgataaggacata
ggagtgaatatgtaggtgtgacaaagtatccctgaagatgtctgaaccct
gctgctggagaggcaagtgcaagtaagaatgatgctccttcatggttgct
gttgttgttgttgctgaatttcttagttgacctgatgaaactatgacagg
ctttagagtactctaaaaggaagtatttacatatacatatggagaaatta
ttatataattatacacatggagaaattatgatataattagttccttgact
ataaagcaacaaaacggaggaggagaataagctaagttttaaaagtgctg
ttcacttcagtggcaccaaggaaagaggcgaagataaaacacagacttca
gaaacaaatatgttgacagccataaaacaaacccagaaacacaaaaacat
tagttttggtagcagagaaaaaggattattcaagacggcccccagtggag
gagctagagaaattacccaaggagctaaagggaactgcaaccctataggt
ggaacaacaatatgaactaaccagtaccccggagctcttgactctagctg
catatgtatcaaaagatggcctagttggccatcactgcaaagagaggccc
attggacttgcaaactttatatgccccagtacaggggaacaccagggcca
aaaagggggagtgggtgggtaggggattgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49159728_49160865
seq2: B6Ng01-106L07.b_44_1167

seq1  GAATTCATTCTTCAATACATCCAGAGAAACAAGAAGGCAGTGGGTATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTTCAATACATCCAGAGAAACAAGAAGGCAGTGGGTATAGA  50

seq1  AACCAAGAAACATCTTCTCCAACTCCTCCAGAACAAATGAGAAGACAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGAAACATCTTCTCCAACTCCTCCAGAACAAATGAGAAGACAAAT  100

seq1  ATTTCAGACAATACCACCCATTGTCTGCTTGGACAGATGCTACCTCTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGACAATACCACCCATTGTCTGCTTGGACAGATGCTACCTCTTAT  150

seq1  GCTTGTGAGTTTCATTTTGGTTTTCTACAGCTGTCCTATTTCCCATAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGAGTTTCATTTTGGTTTTCTACAGCTGTCCTATTTCCCATAATT  200

seq1  TCTCTGAACCTTTGTTCTAGGCAAATTATTTCATCAAACAGATGAATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAACCTTTGTTCTAGGCAAATTATTTCATCAAACAGATGAATGTA  250

seq1  TAGATAACCTATTTGTGATGGTAAGACACTTTTAAAATAGAAGAAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAACCTATTTGTGATGGTAAGACACTTTTAAAATAGAAGAAAAATA  300

seq1  CCACTGAAACTAGAGACTTCTAATTAAAAAAAAATGAAAAGAAATAGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAAACTAGAGACTTCTAATTAAAAAAAAATGAAAAGAAATAGTAT  350

seq1  TCCCATGTTTTTCACTGATTTCAGCAAAGACTCAAACTCACCAGTTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGTTTTTCACTGATTTCAGCAAAGACTCAAACTCACCAGTTTGTG  400

seq1  GGGCAAAACAAATTTTTGGCAATGCCCACTGATTCTCCTACTATAAATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAACAAATTTTTGGCAATGCCCACTGATTCTCCTACTATAAATCC  450

seq1  CTTAAGCTGTATTATGACTCCATCTTACTCTAGAGTCTACTTTGGTATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCTGTATTATGACTCCATCTTACTCTAGAGTCTACTTTGGTATCA  500

seq1  CTGCCTCTGAGATTACTCAATCTCATAATGAGAAATATCTATAGACCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGAGATTACTCAATCTCATAATGAGAAATATCTATAGACCTCT  550

seq1  ATTTGATATAATCAGTGAATTAGATATGCACATTGTTCTTTGCTATGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATATAATCAGTGAATTAGATATGCACATTGTTCTTTGCTATGTAT  600

seq1  TGATCTTTTTATATTGACTTTATAAAATTGCAGCTAATATGTCTTAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTTTATATTGACTTTATAAAATTGCAGCTAATATGTCTTAGTCT  650

seq1  ATTTTAAATATGCTACTAGATTTCCATTGAAATATTCAATTATCGTCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATATGCTACTAGATTTCCATTGAAATATTCAATTATCGTCCAG  700

seq1  CATCTATTTTATCAATATGCCTGTGCCAGAAATTTATGCTGAATGTGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATTTTATCAATATGCCTGTGCCAGAAATTTATGCTGAATGTGAAC  750

seq1  AAGTTTATCATATTAGACAAATGAGCATACTATACTCCCTATTGCTTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTATCATATTAGACAAATGAGCATACTATACTCCCTATTGCTTAGG  800

seq1  TATTTTAGAGCAGAATTTTTTGTCATCAGTGACTGTAATCATGTAATCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGAGCAGAATTTTTTGTCATCAGTGACTGTAATCATGTAATCAG  850

seq1  CTGAAAAGTGAGCAAATGTGGAGAAAATATGGGTGTGGCCATGATTTTTA  900
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTG-AAAGTGAGCAAATGTGGAGAAAATATGGGTGTGGCCATGATTTTTA  899

seq1  CAGAGAGAAACCCGAGAAGACCGATTGAAATTTTCTTCAGTACTCTAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAAACCCGAGAAGACCGATTGAAATTTTCTTCAGTACTCTAATG  949

seq1  TGACAGCGTCTTTAGATAAAGAGAATGGAAAATTAGAAGTAAGAGATAAA  1000
      ||||||||| |||||||||||||||||||||||||| ||| ||| || ||
seq2  TGACAGCGTTTTTAGATAAAGAGAATGGAAAATTAG-AGT-AGAAAT-AA  996

seq1  GGAAATTAAAGTCTCAGCATTACAGTGGAAAAAGAAAGCTTTCTTAAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGAAATTAAAGTCTCAGCATTACAGTGGAAAAAGAAAGCTTTCTT-AAAA  1045

seq1  CACAAATACCAGGATGCACAATAGATCCCATGACATACAGTAGGTAAAAT  1100
      ||| |||||   ||||||| |||||| ||||||||||||||| || ||||
seq2  CAC-AATAC--AGATGCAC-ATAGAT-CCATGACATACAGTA-GTTAAAT  1089

seq1  AGTGATTTGATCTCTGAAAGAGAAATATCCCAATAGTA  1138
      ||||||||||| |||| |||||||||||||| ||||||
seq2  AGTGATTTGAT-TCTG-AAGAGAAATATCCC-ATAGTA  1124

seq1: chr3_49338483_49339311
seq2: B6Ng01-106L07.g_66_894 (reverse)

seq1  CAATCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGTA  50

seq1  CTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATG  100

seq1  GCCAACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCG  150

seq1  GGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCC  200

seq1  TTTAGCTCCTTGGGTAATTTCTCTAGCTCCTCCACTGGGGGCCGTCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTCCTTGGGTAATTTCTCTAGCTCCTCCACTGGGGGCCGTCTTGA  250

seq1  ATAATCCTTTTTCTCTGCTACCAAAACTAATGTTTTTGTGTTTCTGGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCTTTTTCTCTGCTACCAAAACTAATGTTTTTGTGTTTCTGGGTT  300

seq1  TGTTTTATGGCTGTCAACATATTTGTTTCTGAAGTCTGTGTTTTATCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATGGCTGTCAACATATTTGTTTCTGAAGTCTGTGTTTTATCTTC  350

seq1  GCCTCTTTCCTTGGTGCCACTGAAGTGAACAGCACTTTTAAAACTTAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTTCCTTGGTGCCACTGAAGTGAACAGCACTTTTAAAACTTAGCT  400

seq1  TATTCTCCTCCTCCGTTTTGTTGCTTTATAGTCAAGGAACTAATTATATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCCTCCTCCGTTTTGTTGCTTTATAGTCAAGGAACTAATTATATC  450

seq1  ATAATTTCTCCATGTGTATAATTATATAATAATTTCTCCATATGTATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCTCCATGTGTATAATTATATAATAATTTCTCCATATGTATATG  500

seq1  TAAATACTTCCTTTTAGAGTACTCTAAAGCCTGTCATAGTTTCATCAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACTTCCTTTTAGAGTACTCTAAAGCCTGTCATAGTTTCATCAGGT  550

seq1  CAACTAAGAAATTCAGCAACAACAACAACAGCAACCATGAAGGAGCATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAAGAAATTCAGCAACAACAACAACAGCAACCATGAAGGAGCATCA  600

seq1  TTCTTACTTGCACTTGCCTCTCCAGCAGCAGGGTTCAGACATCTTCAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACTTGCACTTGCCTCTCCAGCAGCAGGGTTCAGACATCTTCAGGG  650

seq1  ATACTTTGTCACACCTACATATTCACTCCTATGTCCTTATCAGTGTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTGTCACACCTACATATTCACTCCTATGTCCTTATCAGTGTAAAG  700

seq1  ATGCAAACACTGTTTTTAAAATAAAGATTTTAATATGCTTTTTTCACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAACACTGTTTTTAAAATAAAGATTTTAATATGCTTTTTTCACAAA  750

seq1  AGGATATTCTATGCATGAAAACCTTCCAATATATACACAATCTTTACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATTCTATGCATGAAAACCTTCCAATATATACACAATCTTTACCTT  800

seq1  AATTGCAATGCAACTAAATCATGGAATTC  829
      |||||||||||||||||||||||||||||
seq2  AATTGCAATGCAACTAAATCATGGAATTC  829