BAC Information

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BAC

Clone NameB6Ng01-106P14
Chromosome3 (Build37)
Map Location 82,785,266 - 82,786,389
singlet/doubletsinglet
Overlap genenone
Upstream geneAccn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940, EG633285, Lrat
Downstream geneFgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106P14.bB6Ng01-106P14.g
ACCDH914565DH914566
length1,2361,111
definitionDH914565|Mus musculus domesticus DNA, BAC clone: B6Ng01-106P14, 5' end.DH914566|Mus musculus domesticus DNA, BAC clone: B6Ng01-106P14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagagctcaaggagataaaaacgcttaatgacagtaaacagaac
aaagggagtagggtcctcaggtaagaccctgcccagctaagctaccaact
agtaaaaagggaataaagacaagcataagaggtgaaagaatacatcaaca
gaaaactgatacaaatgtaattgaacaaagaggccaagctccagacccag
cacacagcagagcttggatgctttgtccatgtggttctggacttataaga
atacaagaaagggtaagataaataaaaatattacttacttacttaattaa
ttaaaacaaaaatacaagaaaaggactgtagacatctccctccatgactt
tgggaagccagtgaggccaggcatgtgtcaggatgtgttcctgatggagg
cctagagaagccactgtgtgaagctacgaaggtcaagcctagttagacaa
atgttagagaccctaacatgttggagatgacagggttatgggataactgc
tgaggaaagatgctaacaaggagcggaaccagcccaagagagactgtgtg
ctgcagtcaacaaagctgttaggggtcagagtcctcaagagtgctttgac
cccagtcatggaggtgcagtatgagtttgtcctgctgggctgatgtcttg
ctttggtgcccttatttccccagtgtgctccctcccctccctttcagaat
ggtgatgtatcttctgtgtcactgtatgttgcaagcatgtgatctgcttt
tttattttatgggtgtttacatttaaaacatttccagatgtttctgagag
tctgaacttttcatttttaaacaatattgaggctatgacaagaatatgga
gacttttgaagttgtatggaatgcattttttaaattatatgattacaaat
ttatgagttgaggaagtgggatatggtagtttgaaaaagaatgcaccata
cagactcatacatttgatgattagccaccagaaaaagacactatttgaaa
gatggttgtatccctggatatgccatatccggatcatcccatattcagct
tcaaacgctaacacatgcaatacactagcagatttgctgaagaccagaat
aagctttctctttgtgaactatgctgcctagcaaccgaatgaagctccag
ctagctatggatggacacagccatggaggatagcttagaagtaccagggc
taaaggatcgtctaccctatagggtgggacacacat
gaattccagggcagctttgaccacatagcttgttctaggacagcctaggc
tacatttgagaccttgaaacaaacaagacatttactctctgggctgggaa
gcccagaacatgctggctttgctgggcctctaaacatagttacttatcac
aaacatatatttgtgtgtgttactgtctggtggtcgttccacatgaactc
agatggttttatctaaaagaaggaattctgtctgggtacactgactatgg
tggggagtcagactgagaatttctcagagactccgataaaaggacaaagg
gaatgctctgtgttcttgtccaggaacagacttggcacgatctattctgg
ggcttgggcctgggcctccagttcctgggaaccttgctttctaccctgcc
gggctgtaaccggcagtccgaaggcagacgagcagcctgtgttttctttg
ccaacatagtctgattaagttctctgctggccttgatctgctcttccccg
tacagcttgtatataaagggctgtatattttaataaactggcttggcata
agtcactagcttatacgagaccttttgatcccagccactgcttttgtctt
ctgtatttccaaccctgtcctcccacttgataccctgccatcccagaccc
ttatccctccaggtttggatcagagtaaaggatggttggtttggcagaat
taatatctttattataatttcatatggctttgacaatacattttccattt
tgatcttgttttttccatgtttgatctttagagacattttagaattgctg
aactaaggctgctaagatggctcagcaggtaaagatacctgctgccaact
cctgacaacctgaattcagtcccggacccacatgatggaggaaaaatcag
cttctaaaagatatcgtctgacttctacatgcatgcccacctcatatgca
tgcacacacacacacacacacacacacacacacacacacacacacacaca
cgtagaccaacatgcatgcacttgtgcacatgcaccctcagaacacatgc
acacccccaccatgtatagcctttaaaacgggatgaaatgatgactgcat
tattctttgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82785266_82786389
seq2: B6Ng01-106P14.g_70_1180 (reverse)

seq1  GACAAAGAATAATGACAGCTCATGCATTTTCATTCACTGTTTTTTTTAAA  50
      |||||||||||||| ||| |||| || |||||| |       |||| || 
seq2  GACAAAGAATAATG-CAG-TCAT-CA-TTTCATCC-----CGTTTTAAAG  41

seq1  GCTATTACATGTGTGGGTGTGTGCATGTGTTCTGAGTGTGCATGTGCACA  100
      |||| |||||| ||||| |||||||||||||||||| |||||||||||||
seq2  GCTA-TACATG-GTGGGGGTGTGCATGTGTTCTGAGGGTGCATGTGCACA  89

seq1  AGTGCATGCATGTGTGTCTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  150
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  AGTGCATGCATGTTGGTCTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  139

seq1  TGTGTGTGTGTGTGTGTGTGCATGCATATGAGGGTGGGGCATGCATGTAG  200
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGCATGCATATGAGG--TGGGCATGCATGTAG  187

seq1  AAGTCAGACGATATCTTTTAGAAGCTGATTTTTCCTCCATCATGTGGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGACGATATCTTTTAGAAGCTGATTTTTCCTCCATCATGTGGGTC  237

seq1  CGGGACTGAATTCAGGTTGTCAGGAGTTGGCAGCAGGTATCTTTACCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGACTGAATTCAGGTTGTCAGGAGTTGGCAGCAGGTATCTTTACCTGC  287

seq1  TGAGCCATCTTAGCAGCCTTAGTTCAGCAATTCTAAAATGTCTCTAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCTTAGCAGCCTTAGTTCAGCAATTCTAAAATGTCTCTAAAGA  337

seq1  TCAAACATGGAAAAAACAAGATCAAAATGGAAAATGTATTGTCAAAGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACATGGAAAAAACAAGATCAAAATGGAAAATGTATTGTCAAAGCCA  387

seq1  TATGAAATTATAATAAAGATATTAATTCTGCCAAACCAACCATCCTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAATTATAATAAAGATATTAATTCTGCCAAACCAACCATCCTTTAC  437

seq1  TCTGATCCAAACCTGGAGGGATAAGGGTCTGGGATGGCAGGGTATCAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCCAAACCTGGAGGGATAAGGGTCTGGGATGGCAGGGTATCAAGT  487

seq1  GGGAGGACAGGGTTGGAAATACAGAAGACAAAAGCAGTGGCTGGGATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGACAGGGTTGGAAATACAGAAGACAAAAGCAGTGGCTGGGATCAA  537

seq1  AAGGTCTCGTATAAGCTAGTGACTTATGCCAAGCCAGTTTATTAAAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTCGTATAAGCTAGTGACTTATGCCAAGCCAGTTTATTAAAATAT  587

seq1  ACAGCCCTTTATATACAAGCTGTACGGGGAAGAGCAGATCAAGGCCAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCTTTATATACAAGCTGTACGGGGAAGAGCAGATCAAGGCCAGCA  637

seq1  GAGAACTTAATCAGACTATGTTGGCAAAGAAAACACAGGCTGCTCGTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTTAATCAGACTATGTTGGCAAAGAAAACACAGGCTGCTCGTCTG  687

seq1  CCTTCGGACTGCCGGTTACAGCCCGGCAGGGTAGAAAGCAAGGTTCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGGACTGCCGGTTACAGCCCGGCAGGGTAGAAAGCAAGGTTCCCAG  737

seq1  GAACTGGAGGCCCAGGCCCAAGCCCCAGAATAGATCGTGCCAAGTCTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGAGGCCCAGGCCCAAGCCCCAGAATAGATCGTGCCAAGTCTGTT  787

seq1  CCTGGACAAGAACACAGAGCATTCCCTTTGTCCTTTTATCGGAGTCTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACAAGAACACAGAGCATTCCCTTTGTCCTTTTATCGGAGTCTCTG  837

seq1  AGAAATTCTCAGTCTGACTCCCCACCATAGTCAGTGTACCCAGACAGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCTCAGTCTGACTCCCCACCATAGTCAGTGTACCCAGACAGAAT  887

seq1  TCCTTCTTTTAGATAAAACCATCTGAGTTCATGTGGAACGACCACCAGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTTTAGATAAAACCATCTGAGTTCATGTGGAACGACCACCAGAC  937

seq1  AGTAACACACACAAATATATGTTTGTGATAAGTAACTATGTTTAGAGGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACACACACAAATATATGTTTGTGATAAGTAACTATGTTTAGAGGCC  987

seq1  CAGCAAAGCCAGCATGTTCTGGGCTTCCCAGCCCAGAGAGTAAATGTCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGCCAGCATGTTCTGGGCTTCCCAGCCCAGAGAGTAAATGTCTT  1037

seq1  GTTTGTTTCAAGGTCTCAAATGTAGCCTAGGCTGTCCTAGAACAAGCTAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTCAAGGTCTCAAATGTAGCCTAGGCTGTCCTAGAACAAGCTAT  1087

seq1  GTGGTCAAAGCTGCCCTGGAATTC  1124
      ||||||||||||||||||||||||
seq2  GTGGTCAAAGCTGCCCTGGAATTC  1111