BAC Information

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BAC

Clone NameB6Ng01-107A08
Chromosome3 (Build37)
Map Location 121,525,156 - 121,620,882
singlet/doubletdoublet
Overlap geneLOC100043298
Upstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik, 4930432M17Rik, F3, Abcd3
Downstream geneArhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107A08.bB6Ng01-107A08.g
ACCDH914601DH914602
length425898
definitionDH914601|Mus musculus domesticus DNA, BAC clone: B6Ng01-107A08, 5' end.DH914602|Mus musculus domesticus DNA, BAC clone: B6Ng01-107A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,525,156 - 121,525,586)(121,619,984 - 121,620,882)
sequence
cttcagggaaagggctgcaggttcttttttccttcagagggacaaagtga
ggccatctgggtctctgggtcagagaacctctgctgcttctcagctcttt
ccaatgaaagcaagcatgggcaataatgcacacgaacaggctgtgttaag
agaaacctcgagtacaaaaaaccttgaattcaataatggattttcatgta
caatgaaagattgtttttcaatcactgctgctttaagttgattgaaaaat
gcaaaaggtacgaactggatgtccattcaggaggtgggggcaggagagtc
aagagttcaaggccagccttggctacatacgcaacaataagaaattcaag
gccatagttagttcaaagcccgcttgggatatgtgatcctttcttggaaa
tggagggagaaggagggaggaggga
gaattcaggattgcagagatggaacagttccaactgacggtaagacagag
aacaaaatcaaggttacaggctactaaaattaacagacaacaggaaaaga
ttatggatgtgtgcgtctaggatgcttgggcatatttataggctgatgca
aacagttcgtcaaagcggaggagtcaacaggaaacagatgaaatgcccgt
caggagactaacccagaatgctgtattctgtagagttagaggtccacatt
agcattaggaggacaaactacttatgatggcgtagtaactatatagagac
ccaatagaggactgtagagtgcccaagggtaagaaaaatggaatgatttc
cttaattgtgttttaaaaactaatctattctttgacaggtttttgtgtgt
gtatacacataatattatacatatatacacatttgcatatgtgcatatac
atgtatctaagtaatatggccacacttacctccccacctttctttatcct
cttcccaccctcgccagttcccctcctccaccaagtccccaccttccttc
cctgtctccttttgttttgtttctgttttgtattttgtgaccccctgagc
ttaaccggggccacccatgtggggcatgggtgtggagctatctgctggga
cacagataactcacccgtggctataccgctgaaaaagagttgaatggaag
gaaaacatttatagaactcaggagctggctgtcttgagaagacaataact
tgggtcaaagaaaactcagccaagctaaggagacatttcaggaaggttcc
agaggcaaatatcacctcacacccttctctgtccagatctgctgctgaga
agggctgtaaaggcctgtctgtgtgtgtgtgtgtgtgtgtgggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_121525156_121525586
seq2: B6Ng01-107A08.b_47_477

seq1  GAATTCCTTCAGGGAAAGGGCTGCAGGTTCTTTTTTCCTTCAGAGGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAGGGAAAGGGCTGCAGGTTCTTTTTTCCTTCAGAGGGACA  50

seq1  AAGTGAGGCCATCTGGGTCTCTGGGTCAGAGAACCTCTGCTGCTTCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGGCCATCTGGGTCTCTGGGTCAGAGAACCTCTGCTGCTTCTCAG  100

seq1  CTCTTTCCAATGAAAGCAAGCATGGGCAATAATGCACACGAACAGGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCAATGAAAGCAAGCATGGGCAATAATGCACACGAACAGGCTGT  150

seq1  GTTAAGAGAAACCTCGAGTACAAAAAACCTTGAATTCAATAATGGATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAGAAACCTCGAGTACAAAAAACCTTGAATTCAATAATGGATTTT  200

seq1  CATGTACAATGAAAGATTGTTTTTCAATCACTGCTGCTTTAAGTTGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACAATGAAAGATTGTTTTTCAATCACTGCTGCTTTAAGTTGATTG  250

seq1  AAAAATGCAAAAGGTACGAACTGGATGTCCATTCAGGAGGTGGGGGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCAAAAGGTACGAACTGGATGTCCATTCAGGAGGTGGGGGCAGG  300

seq1  AGAGTCAAGAGTTCAAGGCCAGCCTTGGCTACATACGCAACAATAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAAGAGTTCAAGGCCAGCCTTGGCTACATACGCAACAATAAGAAA  350

seq1  TTCAAGGCCATAGTTAGTTCAAAGCCCGCTTGGGATATGTGATCCTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGCCATAGTTAGTTCAAAGCCCGCTTGGGATATGTGATCCTTTCT  400

seq1  TGGAAATGGAGGGAGAAGGAGGGAGGAGGGA  431
      |||||||||||||||||||||||||||||||
seq2  TGGAAATGGAGGGAGAAGGAGGGAGGAGGGA  431

seq1: chr3_121619984_121620882
seq2: B6Ng01-107A08.g_68_965 (reverse)

seq1  CCCCCCCCACACACACACACACACACACAGACAGGCCTTTACAGCCCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCACACACACACACACACACACAGACAGGCCTTTACAGCCCTTC  50

seq1  TCAGCAGCAGATCTGGACAGAGAAGGGTGTGAGGTGATATTTGCCTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGCAGATCTGGACAGAGAAGGGTGTGAGGTGATATTTGCCTCTGG  100

seq1  AACCTTCCCTGAAATGTCTCCTTAGCTTGGCTGAGTTTTCTTTGACCCAA  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTT-CCTGAAATGTCTCCTTAGCTTGGCTGAGTTTTCTTTGACCCAA  149

seq1  GTTATTGTCTTCTCAAGACAGCCAGCTCCTGAGTTCTATAAATGTTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGTCTTCTCAAGACAGCCAGCTCCTGAGTTCTATAAATGTTTTCC  199

seq1  TTCCATTCAACTCTTTTTCAGCGGTATAGCCACGGGTGAGTTATCTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTCAACTCTTTTTCAGCGGTATAGCCACGGGTGAGTTATCTGTGT  249

seq1  CCCAGCAGATAGCTCCACACCCATGCCCCACATGGGTGGCCCCGGTTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAGATAGCTCCACACCCATGCCCCACATGGGTGGCCCCGGTTAAG  299

seq1  CTCAGGGGGTCACAAAATACAAAACAGAAACAAAACAAAAGGAGACAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGGGTCACAAAATACAAAACAGAAACAAAACAAAAGGAGACAGGG  349

seq1  AAGGAAGGTGGGGACTTGGTGGAGGAGGGGAACTGGCGAGGGTGGGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGTGGGGACTTGGTGGAGGAGGGGAACTGGCGAGGGTGGGAAGA  399

seq1  GGATAAAGAAAGGTGGGGAGGTAAGTGTGGCCATATTACTTAGATACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAGAAAGGTGGGGAGGTAAGTGTGGCCATATTACTTAGATACATG  449

seq1  TATATGCACATATGCAAATGTGTATATATGTATAATATTATGTGTATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCACATATGCAAATGTGTATATATGTATAATATTATGTGTATACA  499

seq1  CACACAAAAACCTGTCAAAGAATAGATTAGTTTTTAAAACACAATTAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAAAACCTGTCAAAGAATAGATTAGTTTTTAAAACACAATTAAGG  549

seq1  AAATCATTCCATTTTTCTTACCCTTGGGCACTCTACAGTCCTCTATTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTCCATTTTTCTTACCCTTGGGCACTCTACAGTCCTCTATTGGG  599

seq1  TCTCTATATAGTTACTACGCCATCATAAGTAGTTTGTCCTCCTAATGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATATAGTTACTACGCCATCATAAGTAGTTTGTCCTCCTAATGCTA  649

seq1  ATGTGGACCTCTAACTCTACAGAATACAGCATTCTGGGTTAGTCTCCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGACCTCTAACTCTACAGAATACAGCATTCTGGGTTAGTCTCCTGA  699

seq1  CGGGCATTTCATCTGTTTCCTGTTGACTCCTCCGCTTTGACGAACTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCATTTCATCTGTTTCCTGTTGACTCCTCCGCTTTGACGAACTGTTT  749

seq1  GCATCAGCCTATAAATATGCCCAAGCATCCTAGACGCACACATCCATAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGCCTATAAATATGCCCAAGCATCCTAGACGCACACATCCATAAT  799

seq1  CTTTTCCTGTTGTCTGTTAATTTTAGTAGCCTGTAACCTTGATTTTGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTGTTGTCTGTTAATTTTAGTAGCCTGTAACCTTGATTTTGTTC  849

seq1  TCTGTCTTACCGTCAGTTGGAACTGTTCCATCTCTGCAATCCTGAATTC  899
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTACCGTCAGTTGGAACTGTTCCATCTCTGCAATCCTGAATTC  898