BAC Information

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BAC

Clone NameB6Ng01-107C16
Chromosome3 (Build37)
Map Location 90,299,050 - 90,454,293
singlet/doubletdoublet
Overlap gene2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6
Upstream geneKcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap
Downstream geneS100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107C16.bB6Ng01-107C16.g
ACCDH914708DH914709
length1,208976
definitionDH914708|Mus musculus domesticus DNA, BAC clone: B6Ng01-107C16, 5' end.DH914709|Mus musculus domesticus DNA, BAC clone: B6Ng01-107C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,299,050 - 90,300,286)(90,453,731 - 90,454,293)
sequence
gaattcactcttcggtggggctgtctttgatttttgtattccccatgagg
gtccaacatggggcatttgtggtttaccagccttttcacttctgaatact
tcatggtgcttgtagatagtgagctggagcaaggtgttcaataccagtac
agtagcatctatattcagattggatatctgatgtattattcagtgatgat
ctgatcgtaccagtgtagctgctaagcattcacaaagcttaggtagtgtt
cataggtactgctcattgactgccacaatccagcactttctgacagtcct
aaatgttagaggggcaggagccagactttgatttcatagcctccaatttg
ggcctgttcttcaatgtcacatttcctttccttcctgactttaacttaag
aatcaatcccctgttatcaaggcctacccaagcaaggcaccttcagcctg
gacatttccctactccttccaacgtccctacacgggaaatctttcctttt
gcttcccaaattcaatatactgcctctctccatagcaggggtgactactt
cagttaggcctggagatgttgcccaccatgacagtgagtaagttgtggtc
tttgctgcttttgtctgtaataggtcaactggtacacacaaacccttgaa
agcaggttggtgcagtctaccctgctcacccagctgtccttaatggtcaa
ccctcccttcagcctagatttctaaccagttagattggtgctgttggatt
ccaagcttttgtgtatctcctggaggctctagccctgccttacttttggc
tccctcttggacttcacctcccccaaacagtagttaggttgatttgcctt
ctgtcttggcagccgtaaggtagaagcgtaaggaagctttgcagaacact
tatgctggttcaggtagcaccaagtgcctctgcctggaagccatctgcac
cctgtactcctcctggcgagcaatgcacacttgtggaagtgcacaagaat
gctatctagcataacccaagctagggcatgcatcagacacttctgttctc
tcgtcaagtcaaaagacaagatgggatttttctggagtacttaaagtatc
ccacagtctgtacggcaaggatgtaagtaaggttggaagttaaggcacta
gtgacgtaccttgaacctacgctgcttaacagacagatcggagaacgcat
ctgtttgg
gaattccagacagccaaggctacactcagaaaccctgtcttgggggtgca
gaagggggcagaaaaagaaaacatgttttacatttttagtcatgatagaa
aatcaatcagaactaaattgatattgcatctcacctcaatcggaatggct
attgtcaaatatacaagcagcagtacatgctgaatatgatgctgagaaaa
ggaatcctgatatactgttggtggaaatgtaaattacagtattcattatt
catggaggctcctagaactaccatatgatccagctctcctacttctggga
atagacctgaagggatctaaattagtataccccagaaatacccacacaac
catgtgtcctaacgcactattcacaatagccaccatacatagaatcagcc
tggacacccatcagtggctagagaaggataaacagacagatataaggaag
aaggaaaatatgtcattcacaggaaaataaatagctgtgaagatcattgt
gctaagtaacataatctagacacagacaatgttgcaggtgtcctctcatc
tggacaacaagcaagtgtaaagagaactgaatggggaggagaaacaaatg
atggtagaagtgatcaggaaagagaagacactgagtgttgggaaattata
atgacatacctgcacaaaaatgtcatcgtgaaattcattagcgtgtatac
tcattttaaaattaagtaaaaaagaaactcctctatggcccccaagaaaa
acaacttcatagtgtctgtagtatagatacaataacattcaattatttct
attttaatttttattcaagttatttatagcccattgacacaaagtagtat
ttacatcatgtggagaagtggggaaaaagaaactgaggcattggttacaa
tgggggatccctttggggaggaagttggagaaataaagtgacttaagaca
gcagcactactcgctcatggagccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_90299050_90300286
seq2: B6Ng01-107C16.b_46_1253

seq1  GAATTCACTCTTCGGTGGGGCTGTCTTTGATTTTTGTATTCCCCATGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTTCGGTGGGGCTGTCTTTGATTTTTGTATTCCCCATGAGG  50

seq1  GTCCAACATGGGGCATTTGTGGTTTACCAGCCTTTTCACTTCTGAATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAACATGGGGCATTTGTGGTTTACCAGCCTTTTCACTTCTGAATACT  100

seq1  TCATGGTGCTTGTAGATAGTGAGCTGGAGCAAGGTGTTCAATACCAGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTGCTTGTAGATAGTGAGCTGGAGCAAGGTGTTCAATACCAGTAC  150

seq1  AGTAGCATCTATATTCAGATTGGATATCTGATGTATTATTCAGTGATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCATCTATATTCAGATTGGATATCTGATGTATTATTCAGTGATGAT  200

seq1  CTGATCGTACCAGTGTAGCTGCTAAGCATTCACAAAGCTTAGGTAGTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCGTACCAGTGTAGCTGCTAAGCATTCACAAAGCTTAGGTAGTGTT  250

seq1  CATAGGTACTGCTCATTGACTGCCACAATCCAGCACTTTCTGACAGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTACTGCTCATTGACTGCCACAATCCAGCACTTTCTGACAGTCCT  300

seq1  AAATGTTAGAGGGGCAGGAGCCAGACTTTGATTTCATAGCCTCCAATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTAGAGGGGCAGGAGCCAGACTTTGATTTCATAGCCTCCAATTTG  350

seq1  GGCCTGTTCTTCAATGTCACATTTCCTTTCCTTCCTGACTTTAACTTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTTCTTCAATGTCACATTTCCTTTCCTTCCTGACTTTAACTTAAG  400

seq1  AATCAATCCCCTGTTATCAAGGCCTACCCAAGCAAGGCACCTTCAGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATCCCCTGTTATCAAGGCCTACCCAAGCAAGGCACCTTCAGCCTG  450

seq1  GACATTTCCCTACTCCTTCCAACGTCCCTACACGGGAAATCTTTCCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTCCCTACTCCTTCCAACGTCCCTACACGGGAAATCTTTCCTTTT  500

seq1  GCTTCCCAAATTCAATATACTGCCTCTCTCCATAGCAGGGGTGACTACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCAAATTCAATATACTGCCTCTCTCCATAGCAGGGGTGACTACTT  550

seq1  CAGTTAGGCCTGGAGATGTTGCCCACCATGACAGTGAGTAAGTTGTGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGGCCTGGAGATGTTGCCCACCATGACAGTGAGTAAGTTGTGGTC  600

seq1  TTTGCTGCTTTTGTCTGTAATAGGTCAACTGGTACACACAAACCCTTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGCTTTTGTCTGTAATAGGTCAACTGGTACACACAAACCCTTGAA  650

seq1  AGCAGGTTGGTGCAGTCTACCCTGCTCACCCAGCTGTCCTTAATGGTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTTGGTGCAGTCTACCCTGCTCACCCAGCTGTCCTTAATGGTCAA  700

seq1  CCCTCCCTTCAGCCTAGATTTCTAACCAGTTAGATTGGTGCTGTTGGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTTCAGCCTAGATTTCTAACCAGTTAGATTGGTGCTGTTGGATT  750

seq1  CCAAGCTTTTGTGTATCTCCTGGAGGCTCTAGCCCTGCCTTACTTTTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTTTTGTGTATCTCCTGGAGGCTCTAGCCCTGCCTTACTTTTGGC  800

seq1  TCCCTCTTGGACTTCACCTCCCCCAAACAGTAGTTAGGTTGATTTGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTTGGACTTCACCTCCCCCAAACAGTAGTTAGGTTGATTTGCCTT  850

seq1  CTGTCTTGGCAGCCGTAAGGTAGAAGCGTAAGGAAGCTTTGCAGAACACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTGGCAGCCGTAAGGTAGAAGCGTAAGGAAGCTTTGCAGAACACT  900

seq1  TATGCTGGTTCAGGTAGCACCAAGTGCCTCTGCCTGGAAGCCATCTGCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGGTTCAGGTAGCACCAAGTGCCTCTGCCTGGAAGCCATCTGCAC  950

seq1  CCTGTACTCCTCCTGGGCGAGGCAATGCACACTTGTGGAAGGTGCACAAG  1000
      |||||||||||||| ||||| ||||||||||||||||||| |||||||||
seq2  CCTGTACTCCTCCT-GGCGA-GCAATGCACACTTGTGGAA-GTGCACAAG  997

seq1  AATGCTATCTAGCATAACCCAAGCTAGGGCATTGGCATCAGACACTTCTG  1050
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  AATGCTATCTAGCATAACCCAAGCTAGGGCAT--GCATCAGACACTTCTG  1045

seq1  TTCTCTCGTCAAGTCAAAAGGACAAGGATGGGGATATTCTGGGAGGTACT  1100
      ||||||||||||||||||| ||||| ||||||  | ||||||   |||| 
seq2  TTCTCTCGTCAAGTCAAAA-GACAA-GATGGGATTTTTCTGG--AGTAC-  1090

seq1  TTAAAGTATCCCACAGTTCTGTAGCGGGAAAGGAGTTGTAGGGTAAGTGT  1150
      |||||||||||||||| ||||||   || |||||  ||||  ||||| ||
seq2  TTAAAGTATCCCACAG-TCTGTA--CGGCAAGGA--TGTA-AGTAAG-GT  1133

seq1  TGGAAAAGGTTAAGCGCAGCTAGTGACGTAGCTTGTAGCTCTAGCTGCTT  1200
      |||||   |||||| ||| ||||||||||| |||| | ||   |||||||
seq2  TGGAA---GTTAAG-GCA-CTAGTGACGTACCTTGAACCT-ACGCTGCTT  1177

seq1  -ACAGACAAGTATTCCTGGAGAGCAGCCATCTGTTTGG  1237
       |||||||  |      |||||  |  |||||||||||
seq2  AACAGACAGAT-----CGGAGA--ACGCATCTGTTTGG  1208

seq1: chr3_90453731_90454293
seq2: B6Ng01-107C16.g_66_628 (reverse)

seq1  TGCTTGTTGTCCAGATGAGAGGACACCTGCAACATTGTCTGTGTCTAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTTGTCCAGATGAGAGGACACCTGCAACATTGTCTGTGTCTAGAT  50

seq1  TATGTTACTTAGCACAATGATCTTCACAGCTATTTATTTTCCTGTGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTACTTAGCACAATGATCTTCACAGCTATTTATTTTCCTGTGAATG  100

seq1  ACATATTTTCCTTCTTCCTTATATCTGTCTGTTTATCCTTCTCTAGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTTCCTTCTTCCTTATATCTGTCTGTTTATCCTTCTCTAGCCAC  150

seq1  TGATGGGTGTCCAGGCTGATTCTATGTATGGTGGCTATTGTGAATAGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGTGTCCAGGCTGATTCTATGTATGGTGGCTATTGTGAATAGTGC  200

seq1  GTTAGGACACATGGTTGTGTGGGTATTTCTGGGGTATACTAATTTAGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGACACATGGTTGTGTGGGTATTTCTGGGGTATACTAATTTAGATC  250

seq1  CCTTCAGGTCTATTCCCAGAAGTAGGAGAGCTGGATCATATGGTAGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGGTCTATTCCCAGAAGTAGGAGAGCTGGATCATATGGTAGTTCT  300

seq1  AGGAGCCTCCATGAATAATGAATACTGTAATTTACATTTCCACCAACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCTCCATGAATAATGAATACTGTAATTTACATTTCCACCAACAGT  350

seq1  ATATCAGGATTCCTTTTCTCAGCATCATATTCAGCATGTACTGCTGCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGGATTCCTTTTCTCAGCATCATATTCAGCATGTACTGCTGCTTG  400

seq1  TATATTTGACAATAGCCATTCCGATTGAGGTGAGATGCAATATCAATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGACAATAGCCATTCCGATTGAGGTGAGATGCAATATCAATTTA  450

seq1  GTTCTGATTGATTTTCTATCATGACTAAAAATGTAAAACATGTTTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGATTGATTTTCTATCATGACTAAAAATGTAAAACATGTTTTCTTT  500

seq1  TTCTGCCCCCTTCTGCACCCCCAAGACAGGGTTTCTGAGTGTAGCCTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCCCCTTCTGCACCCCCAAGACAGGGTTTCTGAGTGTAGCCTTGG  550

seq1  CTGTCTGGAATTC  563
      |||||||||||||
seq2  CTGTCTGGAATTC  563