BAC Information

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BAC

Clone NameB6Ng01-107G05
Chromosome3 (Build37)
Map Location 138,586,637 - 138,743,945
singlet/doubletdoublet
Overlap geneRap1gds1
Upstream geneMap2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1, Tspan5, LOC620771
Downstream geneEG229879, B930007M17Rik, LOC100039840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107G05.bB6Ng01-107G05.g
ACCDH914869DH914870
length1,1591,037
definitionDH914869|Mus musculus domesticus DNA, BAC clone: B6Ng01-107G05, 5' end.DH914870|Mus musculus domesticus DNA, BAC clone: B6Ng01-107G05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,742,770 - 138,743,945)(138,586,637 - 138,587,678)
sequence
gaattcaaggtcagcctggtctacagagttccttccttacagaacagcct
gggctaaaagagggaaaccttgtcttaaaaaacaaacaaacaaacaaaca
aacaaacaaacaaacgaaaacccaaccaaacaacaaccacagtaaaaacc
tctctgctgcattcaggttattatcctctatttagctaccaaggccctac
gagattggtgagtcctcttgtctactcttgtctcatgaactctcctacat
ctttgcttgcttcactgaagccacagaaacgtcttgcaggtccttgtgtc
tagacctgtgcactacagccttctgcctagctaaaggtaccccttgtagg
ttttccctggtagagtaaaatattccgtctattaggagttcttccatagt
accctattgtagcggtgtactaattcctaaacagcaacacacattctcag
tacaacttagatggtactactgggctttctcctcactagttttaaccata
ttattgcattcctctgaaactttcagaggttccttattttcaattttatc
aagttaaaactcttctgtctggttttcttcagtccttcgaaatttgtctc
tcaaacaaacttaatttcatttttgaaatcttatttctcacaagctactc
ttttaatgtttgattgatgtgatatgtgttgtgggtcatgatgcatcctt
ctgttggaagaaattactcccccccccattatttccagaagaaaaattct
acccttcctttaaataccttcttatgaagtcatctttggcttcctttctt
tctgtttttcattcaccgacttaggagatttttgaacaggaagagacttc
taaaatagactggtcttaccctcactttgcataacacgcacctacagtta
tttgagtctgtgattcttgcattgtatcttgatgggtttttgaatcacca
tggaaacaaacctctggtcctgcagaaagtttctagattaactgaggtgg
gaagacccagcctaattgtgagtagcactatttccatgcctggggcctgg
actgagaaagtcccccagtaccgcaatctatcactggcctcctaactgcg
aagcaattcctagctgctccggcctgtcgactgcttcaatgctccacaga
ctgtacttc
gaattctcatgagtgttaatgttgacggagtagatttgggcagaagaaag
gaagtgcaagtgggttgggcctataggttggaaatggttcatgttgggat
gaaattatgtggatagatgactgggctgtgtacaggatgtttgtaccagt
ccaagccctgagtgtggggtatatctgataggtgtggcaacttgatcctc
tggcttgcttataaagtgagaagctctccatgtgtcttggacaaatatgg
caacagcagtcaggagaaaaggtagggattgagggagcaaaggccagaga
atgcagagacttgctatacatttggtttaatgaaggcttgactgtggaat
acaaagtagtcaacatacatgttcatatctggaattatgaacaccacaat
atatattttctatgtttgatgtgttagagtaaaacatctatgctctttgg
ataaaactaaaaatttgttttacaaaaagttttaaaaaaatttttattta
ttacttatttttaggtcagtctcactatgtagccctggaactcattgtgt
agatcagacttgcctcaaattcacagagacctgcatgcctcttccttctt
agtgttgggactaaagcagtgcaccaccatgttgcactcctagtctggtt
taaaattattttatgtgggaaaccttcagaggggagagaaaagattagcc
cacagtagatcacattttttatccactttatcttgaatctctaaaaagtt
ctctctcaaaatcatgaggactattgagtttttcctactgaagagagaat
aagctgagttttagtaagttggccggccatacagccagtgtgtaacaagc
cagaaattacatcagtgtccaaagaccgagtgctttacatatcctacttt
gaagtttggactagtgttggtgcttgatgtgtgtgcagtggtgtagtttg
aaggccagagggacagctttagggatttggtatctctgactttcagggat
caaaccaagttgttaagctggggtggcaggggctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_138742770_138743945
seq2: B6Ng01-107G05.b_51_1209 (reverse)

seq1  GAAGATACAGTCTGTCGTAGCATTGAAGGCATGTCGGCAGGCGCGGAGGC  50
      |||| |||||||||| | ||||||||| ||| |||| ||||| |||| ||
seq2  GAAG-TACAGTCTGT-GGAGCATTGAA-GCA-GTCGACAGGC-CGGA-GC  44

seq1  AGCTAGGGATTTGCTTCTGCAGTTAGGAGGCACAGTGATAGATGGCCGGT  100
      ||||| ||| ||||||| ||||||||||||| ||||||||||| | ||||
seq2  AGCTA-GGAATTGCTTC-GCAGTTAGGAGGC-CAGTGATAGATTG-CGGT  90

seq1  ACTGGGGGGACTTTTCTTCAGTCCAGGCCCCCAGGCCATGG-AATAGTGC  149
      ||| ||||||||||   |||||||||| ||||||| ||||| ||||||||
seq2  ACT-GGGGGACTTT--CTCAGTCCAGG-CCCCAGG-CATGGAAATAGTGC  135

seq1  TACTCACAATTAGGCTGGGTCTTCCCACCTCAGTTAATCTAGAAACTCTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TACTCACAATTAGGCTGGGTCTTCCCACCTCAGTTAATCTAGAAACT-TT  184

seq1  CTTGCAGGACCAGAGGTTTGTTTCCATGGTGATTCAAAAACCCATCAAGA  249
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TGCAGGACCAGAGGTTTGTTTCCATGGTGATTCAAAAACCCATCAAGA  233

seq1  TAACAATGCAAGAATCACAGACTCAAATAACTGTAGGTGCGTGTTATGCA  299
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-ACAATGCAAGAATCACAGACTCAAATAACTGTAGGTGCGTGTTATGCA  282

seq1  AAGTGAGGGTAAGACCAGTCTATTTTAGAAGTCTCTTCCTGTTCAAAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGGGTAAGACCAGTCTATTTTAGAAGTCTCTTCCTGTTCAAAAAT  332

seq1  CTCCTAAGTCGGTGAATGAAAAACAGAAAGAAAGGAAGCCAAAGATGACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAGTCGGTGAATGAAAAACAGAAAGAAAGGAAGCCAAAGATGACT  382

seq1  TCATAAGAAGGTATTTAAAGGAAGGGTAGAATTTTTCTTCTGGAAATAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGAAGGTATTTAAAGGAAGGGTAGAATTTTTCTTCTGGAAATAAT  432

seq1  GGGGGGGGGAGTAATTTCTTCCAACAGAAGGATGCATCATGACCCACAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGAGTAATTTCTTCCAACAGAAGGATGCATCATGACCCACAAC  482

seq1  ACATATCACATCAATCAAACATTAAAAGAGTAGCTTGTGAGAAATAAGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCACATCAATCAAACATTAAAAGAGTAGCTTGTGAGAAATAAGAT  532

seq1  TTCAAAAATGAAATTAAGTTTGTTTGAGAGACAAATTTCGAAGGACTGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAATGAAATTAAGTTTGTTTGAGAGACAAATTTCGAAGGACTGAA  582

seq1  GAAAACCAGACAGAAGAGTTTTAACTTGATAAAATTGAAAATAAGGAACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCAGACAGAAGAGTTTTAACTTGATAAAATTGAAAATAAGGAACC  632

seq1  TCTGAAAGTTTCAGAGGAATGCAATAATATGGTTAAAACTAGTGAGGAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAGTTTCAGAGGAATGCAATAATATGGTTAAAACTAGTGAGGAGA  682

seq1  AAGCCCAGTAGTACCATCTAAGTTGTACTGAGAATGTGTGTTGCTGTTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAGTAGTACCATCTAAGTTGTACTGAGAATGTGTGTTGCTGTTTA  732

seq1  GGAATTAGTACACCGCTACAATAGGGTACTATGGAAGAACTCCTAATAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTAGTACACCGCTACAATAGGGTACTATGGAAGAACTCCTAATAGA  782

seq1  CGGAATATTTTACTCTACCAGGGAAAACCTACAAGGGGTACCTTTAGCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAATATTTTACTCTACCAGGGAAAACCTACAAGGGGTACCTTTAGCTA  832

seq1  GGCAGAAGGCTGTAGTGCACAGGTCTAGACACAAGGACCTGCAAGACGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGGCTGTAGTGCACAGGTCTAGACACAAGGACCTGCAAGACGTT  882

seq1  TCTGTGGCTTCAGTGAAGCAAGCAAAGATGTAGGAGAGTTCATGAGACAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGCTTCAGTGAAGCAAGCAAAGATGTAGGAGAGTTCATGAGACAA  932

seq1  GAGTAGACAAGAGGACTCACCAATCTCGTAGGGCCTTGGTAGCTAAATAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGACAAGAGGACTCACCAATCTCGTAGGGCCTTGGTAGCTAAATAG  982

seq1  AGGATAATAACCTGAATGCAGCAGAGAGGTTTTTACTGTGGTTGTTGTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAATAACCTGAATGCAGCAGAGAGGTTTTTACTGTGGTTGTTGTTT  1032

seq1  GGTTGGGTTTTCGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGTTTTCGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTT  1082

seq1  TAAGACAAGGTTTCCCTCTTTTAGCCCAGGCTGTTCTGTAAGGAAGGAAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAAGGTTTCCCTCTTTTAGCCCAGGCTGTTCTGTAAGGAAGGAAC  1132

seq1  TCTGTAGACCAGGCTGACCTTGAATTC  1176
      |||||||||||||||||||||||||||
seq2  TCTGTAGACCAGGCTGACCTTGAATTC  1159

seq1: chr3_138586637_138587678
seq2: B6Ng01-107G05.g_68_1104

seq1  GAATTCTCATGAGTGTTAATGTTGACGGAGTAGATTTGGGCAGAAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGAGTGTTAATGTTGACGGAGTAGATTTGGGCAGAAGAAAG  50

seq1  GAAGTGCAAGTGGGTTGGGCCTATAGGTTGGAAATGGTTCATGTTGGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCAAGTGGGTTGGGCCTATAGGTTGGAAATGGTTCATGTTGGGAT  100

seq1  GAAATTATGTGGATAGATGACTGGGCTGTGTACAGGATGTTTGTACCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATGTGGATAGATGACTGGGCTGTGTACAGGATGTTTGTACCAGT  150

seq1  CCAAGCCCTGAGTGTGGGGTATATCTGATAGGTGTGGCAACTTGATCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCCTGAGTGTGGGGTATATCTGATAGGTGTGGCAACTTGATCCTC  200

seq1  TGGCTTGCTTATAAAGTGAGAAGCTCTCCATGTGTCTTGGACAAATATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGCTTATAAAGTGAGAAGCTCTCCATGTGTCTTGGACAAATATGG  250

seq1  CAACAGCAGTCAGGAGAAAAGGTAGGGATTGAGGGAGCAAAGGCCAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCAGTCAGGAGAAAAGGTAGGGATTGAGGGAGCAAAGGCCAGAGA  300

seq1  ATGCAGAGACTTGCTATACATTTGGTTTAATGAAGGCTTGACTGTGGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAGACTTGCTATACATTTGGTTTAATGAAGGCTTGACTGTGGAAT  350

seq1  ACAAAGTAGTCAACATACATGTTCATATCTGGAATTATGAACACCACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTAGTCAACATACATGTTCATATCTGGAATTATGAACACCACAAT  400

seq1  ATATATTTTCTATGTTTGATGTGTTAGAGTAAAACATCTATGCTCTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTTCTATGTTTGATGTGTTAGAGTAAAACATCTATGCTCTTTGG  450

seq1  ATAAAACTAAAAATTTGTTTTACAAAAAGTTTTAAAAAAATTTTTATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTAAAAATTTGTTTTACAAAAAGTTTTAAAAAAATTTTTATTTA  500

seq1  TTACTTATTTTTAGGTCAGTCTCACTATGTAGCCCTGGAACTCATTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTATTTTTAGGTCAGTCTCACTATGTAGCCCTGGAACTCATTGTGT  550

seq1  AGATCAGACTTGCCTCAAATTCACAGAGACCTGCATGCCTCTTCCTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGACTTGCCTCAAATTCACAGAGACCTGCATGCCTCTTCCTTCTT  600

seq1  AGTGTTGGGACTAAAGCAGTGCACCACCATGTTGCACTCCTAGTCTGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGGGACTAAAGCAGTGCACCACCATGTTGCACTCCTAGTCTGGTT  650

seq1  TAAAATTATTTTATGTGGGAAACCTTCAGAGGGGAGAGAAAAGATTAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTATTTTATGTGGGAAACCTTCAGAGGGGAGAGAAAAGATTAGCC  700

seq1  CACAGTAGATCACA-TTTTTATCCACTTTATCTTGAATCTCTAAAAAGTT  749
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CACAGTAGATCACATTTTTTATCCACTTTATCTTGAATCTCTAAAAAGTT  750

seq1  CTCTCTCAAAATCATGAGGACTATTGAGTTTTTCCTACTGAAGAGAGAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCAAAATCATGAGGACTATTGAGTTTTTCCTACTGAAGAGAGAAT  800

seq1  AAGCTGAGTTTTAAGTAAGTTGGCCGGCCATACAGCCAGTGTGTAACAAA  849
      |||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  AAGCTGAGTTTT-AGTAAGTTGGCCGGCCATACAGCCAGTGTGTAAC-AA  848

seq1  GCCAG-AATTACATCAGTGTCCAAAGACCGAGTGCTTTACATTATCCTAC  898
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCCAGAAATTACATCAGTGTCCAAAGACCGAGTGCTTTACA-TATCCTAC  897

seq1  TTTGAAGTTTGTACTAGTGTTGTGTGCTTGATGTGTGTGCAGTGGTGTAG  948
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  TTTGAAGTTTGGACTAGTGTTG-GTGCTTGATGTGTGTGCAGTGGTGTAG  946

seq1  TTTGTAAGGTCAGA-GGACAGCTTTTAGGAGTTGGTTATCTCTGACTTTT  997
      |||| |||| |||| ||||||||||  ||| |||| |||||||||| |||
seq2  TTTG-AAGGCCAGAGGGACAGCTTTAGGGATTTGG-TATCTCTGAC-TTT  993

seq1  CAGGGATCAAACCCAAGTTGTTAAGCTTGGGTGGCAAGGGCTTTC  1042
      ||||||||||| ||||||||||||||| |||||||| ||||||||
seq2  CAGGGATCAAA-CCAAGTTGTTAAGCTGGGGTGGCAGGGGCTTTC  1037