BAC Information

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BAC

Clone NameB6Ng01-108B04
Chromosome3 (Build37)
Map Location 122,476,654 - 122,664,334
singlet/doubletdoublet
Overlap genePde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53
Upstream geneAbcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1
Downstream geneMyoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108B04.bB6Ng01-108B04.g
ACCDH915352DH915353
length1,0481,192
definitionDH915352|Mus musculus domesticus DNA, BAC clone: B6Ng01-108B04, 5' end.DH915353|Mus musculus domesticus DNA, BAC clone: B6Ng01-108B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,476,654 - 122,477,700)(122,663,125 - 122,664,334)
sequence
gaattcatattaagagggagctgcagtaagttgtaagttgttacagactt
gaagtaattccccaacctgaagttagaactgaacaagtgtaacagcccct
gacaccgaaccacgagaggcttcttcaagcctctccaaaccttttgtgga
actcaaggcttacgggccaagtttagcttggccaacttaagtacagttta
tctttcaaattccttctgacctatgtgagagtaggcttcgcctgttaatt
cctgttttggttttttttttaataacttcttttcccaaaaataattctgt
tgaaggtcaaataattttcaaggccagagtttcaaaagagcacgagctac
gttcctacatgagaaattcctgcacatgcatgattcgcccgcattcctct
gtagctggccactggctcctgcttcatttttagtgaatgagcctttttga
aatagttgcagtcaatgtaaaatgtttgtttgattatatattttattgga
aatgtaaaagattgttctgctttgtgtgtgtgtgtgtgtgtgtattagaa
aactatgcagaatatttacttaaaacacaattacctgctagcttaatctg
attataagatgaagatctgaagtccagtgaggtttgggctctaggaaatt
aggaatattactacccttcttaagaataaaaggctggacgcaggagtttt
gttttagctttgcagctttgtgcttttaaacagcccatgtctgctgtaaa
cacgttcactttgaggatctgaggataatggaaaaaaaaaagtgtcactt
ttctcttcttatcctaggttgttggtgtagctcaggccatcaacaagaaa
tcaggaaatggtgggaccttcactgaaaagatgaaaaggtaacaaaacca
gaggctggcatgatgccagctgagagagactcgtctctctatggcacatg
acctctggagtaaggccttgctgaaatggtgcttgaaaaatacgtgagag
tgtgagtgtgtgtgtgtgctcgtgtgcatgcatcagtacatttaggaa
gaattcattttcacctggtgccaaacagggacgcagacatgtgcacctct
aagtcttgtgtgactcatcagaagtttgccatgactctgtatgagcaggt
gaggtgcctgggttgtctgtgtagacactggactgctgtctcgggagcga
tggactcagcagcttgtgttcttccgcagtgtgtgtgccggagctgtggc
gcttcctcagaccctctgccctttaccgaactcgtgaggtacatttctac
aacagccctgtggtaagcttctcaaagaatagttagcaaagaggctagga
gcacacttacacacattaggcatttattctgaaaaattagaacatagtat
agattttcctttctgacattatcgaatgtgctttaataagagagcccagg
aagtagctttctcggctgaaggcttagaatttagcttaatataggttacc
tgaagtgcttggctaaagtttcagattgcggtttggaatacatataagta
atatagtatgtgttttgaggaagctaaggctatatatggaattcatttgt
ttatataacgtatatataacctgacagaaattttatatagtatttgtagt
gagcctgcatcttaaatggagctcatcacataaacttaggtttagaattt
accattcatagcaataatattagctctcaaatttcagattttggagcatt
tcagactaaatacattctataataaaatgcaggatttatatcttttatat
ttatagcagacctttggactgggaaaatgaccttaaagcaaggaactcat
tggtagatgaactgcacaagacaccttcatctttacttagctgctcccct
tgtattggccttgtctctaccctcgtctcctttacagtgataaaagccga
gataaagggaaaagaaaggaaagcgcgaatttaaccttaggttattgtat
ttagacctcaggagtcaactgtaaagtttgccttgcttactgcctgcctg
tctgccagctccttctctcttcctctcagaaaaagctagaatgcaaactt
ctagccttagacctttgcagcattgtcatcaaagtctttgagtcttttat
catttaggagctattcctcataggtgggatgataagagagtgacccagct
gatatcaaaaggttcctcattactccatctgcagttgttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_122476654_122477700
seq2: B6Ng01-108B04.b_43_1080

seq1  GAATTCATATTAAGAGGGAGCTGCAGTAAGTTGTAAGTTGTTACAGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTAAGAGGGAGCTGCAGTAAGTTGTAAGTTGTTACAGACTT  50

seq1  GAAGTAATTCCCCAACCTGAAGTTAGAACTGAACAAGTGTAACAGCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAATTCCCCAACCTGAAGTTAGAACTGAACAAGTGTAACAGCCCCT  100

seq1  GACACCGAACCACGAGAGGCTTCTTCAAGCCTCTCCAAACCTTTTGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCGAACCACGAGAGGCTTCTTCAAGCCTCTCCAAACCTTTTGTGGA  150

seq1  ACTCAAGGCTTACGGGCCAAGTTTAGCTTGGCCAACTTAAGTACAGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGGCTTACGGGCCAAGTTTAGCTTGGCCAACTTAAGTACAGTTTA  200

seq1  TCTTTCAAATTCCTTCTGACCTATGTGAGAGTAGGCTTCGCCTGTTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAAATTCCTTCTGACCTATGTGAGAGTAGGCTTCGCCTGTTAATT  250

seq1  CCTGTTTTGGTTTTTTTTTTAATAACTTCTTTTCCCAAAAATAATTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTGGTTTTTTTTTTAATAACTTCTTTTCCCAAAAATAATTCTGT  300

seq1  TGAAGGTCAAATAATTTTCAAGGCCAGCGTTTCAAAAGAGCACGAGCTAC  350
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGAAGGTCAAATAATTTTCAAGGCCAGAGTTTCAAAAGAGCACGAGCTAC  350

seq1  GTTCCTACATGAGAAATTCCTGCACATGCATGATTCGCCCGCATTCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTACATGAGAAATTCCTGCACATGCATGATTCGCCCGCATTCCTCT  400

seq1  GTAGCTGGCCACTGGCTCCTGCTTCATTTTTAGTGAATGAGCCTTTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGGCCACTGGCTCCTGCTTCATTTTTAGTGAATGAGCCTTTTTGA  450

seq1  AATAGTTGCAGTCAATGTAAAATGTTTGTTTGATTATATATTTTATTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTGCAGTCAATGTAAAATGTTTGTTTGATTATATATTTTATTGGA  500

seq1  AATGTAAAAGATTGTTCTGCTTTGTGTGTGTGTGTGTGTGTGTATTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAAGATTGTTCTGCTTTGTGTGTGTGTGTGTGTGTGTATTAGAA  550

seq1  AACTATGCAGAATATTTACTTAAAACACAATTACCTGCTAGCTTAATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGCAGAATATTTACTTAAAACACAATTACCTGCTAGCTTAATCTG  600

seq1  ATTATAAGATGAAGATCTGAAGTCCAGTGAGGTTTGGGCTCTAGGAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAGATGAAGATCTGAAGTCCAGTGAGGTTTGGGCTCTAGGAAATT  650

seq1  AGGAATATTACTACCCTTCTTAAGAATAAAAGGCTGGACGCAGGAGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATTACTACCCTTCTTAAGAATAAAAGGCTGGACGCAGGAGTTTT  700

seq1  GTTTTAGCTTTGCAGCTTTGTGCTTTTAAACAGCCCATGTCTGCTGTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGCTTTGCAGCTTTGTGCTTTTAAACAGCCCATGTCTGCTGTAAA  750

seq1  CACGTTCACTTTGAGGATCTGAGGATAATGGAAAAAAAAAAGTGTCACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTCACTTTGAGGATCTGAGGATAATGGAAAAAAAAAAGTGTCACTT  800

seq1  TTCTCTTCTTATCCTAGGTTGTTGGTGTAGCTCAGGCCATCAACAAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCTTATCCTAGGTTGTTGGTGTAGCTCAGGCCATCAACAAGAAA  850

seq1  TCAGGAAATGGTGGGACCTTCACTGAAAAAGATGAAAAGGTAACAAAACC  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCAGGAAATGGTGGGACCTTCACTG-AAAAGATGAAAAGGTAACAAAACC  899

seq1  AGAGGCTGGCATGATGCCAGCTGAGAGAGACTCGTTCTCTCTATGGCACA  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGAGGCTGGCATGATGCCAGCTGAGAGAGACTCG-TCTCTCTATGGCACA  948

seq1  TGACCTCTGGAGTAAGGCCTTGCTGAAATGGTTGCTTGAAAAAAAATTAC  1000
      ||||||||||||||||||||||||||||||| |||||||||||    |||
seq2  TGACCTCTGGAGTAAGGCCTTGCTGAAATGG-TGCTTGAAAAA----TAC  993

seq1  GGTGAGAGGTGTGAGTGTGTGTGTGTGCTCGTGTGCATGCATCAGTA  1047
       |||||| |||||||||||||||||||||||||||||||||||||||
seq2  -GTGAGA-GTGTGAGTGTGTGTGTGTGCTCGTGTGCATGCATCAGTA  1038

seq1: chr3_122663125_122664334
seq2: B6Ng01-108B04.g_67_1258 (reverse)

seq1  AATAACAAAACTGCCAGTATTGGAGTAATGAG--ACATTTTGTAATCAGA  48
      ||||||  ||||| |||   ||||||||||||  || |||||  ||||| 
seq2  AATAAC--AACTG-CAG--ATGGAGTAATGAGGAACCTTTTGATATCAG-  44

seq1  CTTGGGTTTCCATCTTAATCCATCCACCTATGAGGTAGATTAAGCTCACT  98
        |||||  |  |||| |||   |||||||||||| |     ||||| ||
seq2  -CTGGGTCACTCTCTT-ATCATCCCACCTATGAGGAA----TAGCTC-CT  87

seq1  AAATTGATAAAGGACTCAAAGGAACTTTGATGACAAATGCTGCATAAGGT  148
      ||| ||||||| |||||||||  ||||||||||| ||||||||| |||||
seq2  AAA-TGATAAAAGACTCAAAG--ACTTTGATGAC-AATGCTGCA-AAGGT  132

seq1  CTAAGGCTAG-AGTTTGCATTTCTAGCTGTTTCTGAGAGGGAGAGAGAAG  197
      |||||||||| |||||||| |||||||| ||||||||||| |||||||||
seq2  CTAAGGCTAGAAGTTTGCA-TTCTAGCTTTTTCTGAGAGGAAGAGAGAAG  181

seq1  GAGCTGGCAGACAGGCAGGCAGTAAGCAAGGCAAACTTTTACAGTTGACT  247
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGCTGGCAGACAGGCAGGCAGTAAGCAAGGCAAAC-TTTACAGTTGACT  230

seq1  CCTGAGGTCTAAAATACAATAACCTAAGGTTAAATTCGCGCTTTCCTTTC  297
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGTCT-AAATACAATAACCTAAGGTTAAATTCGCGCTTTCCTTTC  279

seq1  TTTTCCCTTTATCTCGGCTTTTATCACTGTAAAGGAGACGAGGGTAGAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTTTATCTCGGCTTTTATCACTGTAAAGGAGACGAGGGTAGAGA  329

seq1  CAAGGCCAATACAAGGGGAGCAGCTAAGTAAAGATGAAGGTGTCTTGTGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCAATACAAGGGGAGCAGCTAAGTAAAGATGAAGGTGTCTTGTGC  379

seq1  AGTTCATCTACCAATGAGTTCCTTGCTTTAAGGTCATTTTCCCAGTCCAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATCTACCAATGAGTTCCTTGCTTTAAGGTCATTTTCCCAGTCCAA  429

seq1  AGGTCTGCTATAAATATAAAAGATATAAATCCTGCATTTTATTATAGAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGCTATAAATATAAAAGATATAAATCCTGCATTTTATTATAGAAT  479

seq1  GTATTTAGTCTGAAATGCTCCAAAATCTGAAATTTGAGAGCTAATATTAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAGTCTGAAATGCTCCAAAATCTGAAATTTGAGAGCTAATATTAT  529

seq1  TGCTATGAATGGTAAATTCTAAACCTAAGTTTATGTGATGAGCTCCATTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGAATGGTAAATTCTAAACCTAAGTTTATGTGATGAGCTCCATTT  579

seq1  AAGATGCAGGCTCACTACAAATACTATATAAAATTTCTGTCAGGTTATAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCAGGCTCACTACAAATACTATATAAAATTTCTGTCAGGTTATAT  629

seq1  ATACGTTATATAAACAAATGAATTCCATATATAGCCTTAGCTTCCTCAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTTATATAAACAAATGAATTCCATATATAGCCTTAGCTTCCTCAAA  679

seq1  ACACATACTATATTACTTATATGTATTCCAAACCGCAATCTGAAACTTTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACTATATTACTTATATGTATTCCAAACCGCAATCTGAAACTTTA  729

seq1  GCCAAGCACTTCAGGTAACCTATATTAAGCTAAATTCTAAGCCTTCAGCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCACTTCAGGTAACCTATATTAAGCTAAATTCTAAGCCTTCAGCC  779

seq1  GAGAAAGCTACTTCCTGGGCTCTCTTATTAAAGCACATTCGATAATGTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCTACTTCCTGGGCTCTCTTATTAAAGCACATTCGATAATGTCA  829

seq1  GAAAGGAAAATCTATACTATGTTCTAATTTTTCAGAATAAATGCCTAATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAAATCTATACTATGTTCTAATTTTTCAGAATAAATGCCTAATG  879

seq1  TGTGTAAGTGTGCTCCTAGCCTCTTTGCTAACTATTCTTTGAGAAGCTTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAGTGTGCTCCTAGCCTCTTTGCTAACTATTCTTTGAGAAGCTTA  929

seq1  CCACAGGGCTGTTGTAGAAATGTACCTCACGAGTTCGGTAAAGGGCAGAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGGCTGTTGTAGAAATGTACCTCACGAGTTCGGTAAAGGGCAGAG  979

seq1  GGTCTGAGGAAGCGCCACAGCTCCGGCACACACACTGCGGAAGAACACAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGAGGAAGCGCCACAGCTCCGGCACACACACTGCGGAAGAACACAA  1029

seq1  GCTGCTGAGTCCATCGCTCCCGAGACAGCAGTCCAGTGTCTACACAGACA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGAGTCCATCGCTCCCGAGACAGCAGTCCAGTGTCTACACAGACA  1079

seq1  ACCCAGGCACCTCACCTGCTCATACAGAGTCATGGCAAACTTCTGATGAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGCACCTCACCTGCTCATACAGAGTCATGGCAAACTTCTGATGAG  1129

seq1  TCACACAAGACTTAGAGGTGCACATGTCTGCGTCCCTGTTTGGCACCAGG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAAGACTTAGAGGTGCACATGTCTGCGTCCCTGTTTGGCACCAGG  1179

seq1  TGAAAATGAATTC  1210
      |||||||||||||
seq2  TGAAAATGAATTC  1192