BAC Information

Click to search

BAC

Clone NameB6Ng01-108C06
Chromosome3 (Build37)
Map Location 120,537,919 - 120,539,014
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108C06.bB6Ng01-108C06.g
ACCDH915403DH915404
length6581,080
definitionDH915403|Mus musculus domesticus DNA, BAC clone: B6Ng01-108C06, 5' end.DH915404|Mus musculus domesticus DNA, BAC clone: B6Ng01-108C06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaatgaactgttttcactgaatagcccttcatctgcaacctgtg
tgtataaaactgtcctagtaaaactgttctctctctctctctctctctct
ctctctctctctctctctctctctctctctctctctaaaaaaaaaaaaat
atatatataaatatatataaatatatatatatctctatatatatatatag
atatatcgcgcgagagagaaaaatacactctgtccaccactctctccccc
tagagaaaatggtagaagcgagagaccacactatgtgaatgagagagtac
tagaaaatagcttttgctcttttctgggtgggtgggacacttgaaaaaaa
aaaaaaaaaggaaaaagatataagttctttcctgtctctctctggctctc
gctctcaaagggggtgaaagaaactctaaaagaaaaactctctatctcac
tctctcactcaacctactaagtgtatatacaaataaagaataaaaaagga
aaaaaaaaaatgctccacccatctatacccccccctttctcctttataca
gagagctgccggagctggaggaggtggcttatttaagtgagagataccca
ctcaggaggtagagaaatagagaggagtgctaagaaggcctcgtctattt
taattgtc

gaattccaggggacacttaatattctccatactttaagccatgacatttc
atagctatttacttgcatggcattcttttaacttacattctagtgactac
taattttgataaattttgtatacttatcttctattgaacctctaacttac
aaaacttttcctttaaaattatttgaacacaaatactaaagttctcagcg
aaacactagcaaaccaaaagcaatagcacattaaaaggatcacctaccct
aatcaagtgggatttatttccgggatgcaaggatggttcaagatttacta
gtcaataatatgaaaaccccaccaaaagaatggagaacaacccccccccc
aaatccatcttagtaaatgcataaaagaaaaaaatgcagcatgatttcac
cataaaactctaaaactaaatattaagtgaagaatttcacataattatga
aattataaaaggtaagtcaattaccgacatcctgctgtatgggggttggt
gatagcctgcctctgagagctagaacagaagagggctgctctatcgcact
aggatgctctattggactatcaaggtgtagtagttttcactggacatttc
ttgcatatacttcgttaaatcatcccccaagtattccatattctagagct
attataatggcagtgttattaccagctgagcttttcaaaatctcagtgtt
cacaatcactactggcatacagaaaataggttgggtttttgtttgtttgt
tttggggttttttttgcacattaactttagtatattagtatattataact
agaatatactaagcctactcatttattttatttgccagagtttttctatg
tgggtagccagttgtagtcatatttgtataaaataactttagtttaagta
ctttttccttttttctgtttcattattatcttggacatttagaggataat
acagtcttctgtaaatataagatataaaactgagagtggtcacactctct
gtctttgatagaggactacttgtagtctcagagtaggcggggaggtacaa
ttttagttaagtcatattatattctgatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_120537919_120539014
seq2: B6Ng01-108C06.g_68_1147 (reverse)

seq1  ACATCAGAAAATAAAATATAAACTAAACTAAAA-TGTACCTCCCCGCTTA  49
      ||||||||| |||| ||    ||| |||||||| ||||||||||||| ||
seq2  ACATCAGAATATAATAT---GACTTAACTAAAATTGTACCTCCCCGCCTA  47

seq1  CTCTGAAGGACTTAAACAGTAGTCCCTTCTATCAGAGACAGGAGAAGTGT  99
      ||||||  ||||  |  ||||||||  ||||||| ||||| ||| |||||
seq2  CTCTGA--GACT--ACAAGTAGTCC--TCTATCAAAGACA-GAG-AGTGT  89

seq1  GACCACTCTCAGTTTTATATTCTTATATTTACAGGAAGAACTGTATTTAT  149
      ||||||||||||||||||| ||||||||||||| |||| |||||| ||||
seq2  GACCACTCTCAGTTTTATA-TCTTATATTTACA-GAAG-ACTGTA-TTAT  135

seq1  CCTCTAAATGTCCAAGATAATAATGAAACAAGAAAAAAAGGAAAAAGTAC  199
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  CCTCTAAATGTCCAAGATAATAATGAAACA--GAAAAAAGGAAAAAGTAC  183

seq1  TTAAAACTAAAGTTATTTTATACAAATATGACTACAACTGGCTACCCACA  249
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TT-AAACTAAAGTTATTTTATACAAATATGACTACAACTGGCTACCCACA  232

seq1  TAG-AAAACTCTGGCAAATAAAATAAATGAGTAGGCTTAGTATATTCTAG  298
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAACTCTGGCAAATAAAATAAATGAGTAGGCTTAGTATATTCTAG  282

seq1  TTATAATATACTAATATACTAAAGTTAATGTGCAAAAAAAACCCCAAAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATATACTAATATACTAAAGTTAATGTGCAAAAAAAACCCCAAAAC  332

seq1  AAACAAACAAAAACCCAACCTATTTTCTGTATGCCAGTAGTGATTGTGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAAAACCCAACCTATTTTCTGTATGCCAGTAGTGATTGTGAA  382

seq1  CACTGAGATTTTGAAAAGCTCAGCTGGTAATAACACTGCCATTATAATAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGATTTTGAAAAGCTCAGCTGGTAATAACACTGCCATTATAATAG  432

seq1  CTCTAGAATATGGAATACTTGGGGGATGATTTAACGAAGTATATGCAAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAATATGGAATACTTGGGGGATGATTTAACGAAGTATATGCAAGA  482

seq1  AATGTCCAGTGAAAACTACTACACCTTGATAGTCCAATAGAGCATCCTAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCAGTGAAAACTACTACACCTTGATAGTCCAATAGAGCATCCTAG  532

seq1  TGCGATAGAGCAGCCCTCTTCTGTTCTAGCTCTCAGAGGCAGGCTATCAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGATAGAGCAGCCCTCTTCTGTTCTAGCTCTCAGAGGCAGGCTATCAC  582

seq1  CAACCCCCATACAGCAGGATGTCGGTAATTGACTTACCTTTTATAATTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCCATACAGCAGGATGTCGGTAATTGACTTACCTTTTATAATTTC  632

seq1  ATAATTATGTGAAATTCTTCACTTAATATTTAGTTTTAGAGTTTTATGGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATGTGAAATTCTTCACTTAATATTTAGTTTTAGAGTTTTATGGT  682

seq1  GAAATCATGCTGCATTTTTTTCTTTTATGCATTTACTAAGATGGATTTGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATGCTGCATTTTTTTCTTTTATGCATTTACTAAGATGGATTTGG  732

seq1  GGGGGGGGTTGTTCTCCATTCTTTTGGTGGGGTTTTCATATTATTGACTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGTTGTTCTCCATTCTTTTGGTGGGGTTTTCATATTATTGACTA  782

seq1  GTAAATCTTGAACCATCCTTGCATCCCGGAAATAAATCCCACTTGATTAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCTTGAACCATCCTTGCATCCCGGAAATAAATCCCACTTGATTAG  832

seq1  GGTAGGTGATCCTTTTAATGTGCTATTGCTTTTGGTTTGCTAGTGTTTCG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGTGATCCTTTTAATGTGCTATTGCTTTTGGTTTGCTAGTGTTTCG  882

seq1  CTGAGAACTTTAGTATTTGTGTTCAAATAATTTTAAAGGAAAAGTTTTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACTTTAGTATTTGTGTTCAAATAATTTTAAAGGAAAAGTTTTGT  932

seq1  AAGTTAGAGGTTCAATAGAAGATAAGTATACAAAATTTATCAAAATTAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGAGGTTCAATAGAAGATAAGTATACAAAATTTATCAAAATTAGT  982

seq1  AGTCACTAGAATGTAAGTTAAAAGAATGCCATGCAAGTAAATAGCTATGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTAGAATGTAAGTTAAAAGAATGCCATGCAAGTAAATAGCTATGA  1032

seq1  AATGTCATGGCTTAAAGTATGGAGAATATTAAGTGTCCCCTGGAATTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCATGGCTTAAAGTATGGAGAATATTAAGTGTCCCCTGGAATTC  1080


| Home | SequenceCutter | Blast | Download |