BAC Information

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BAC

Clone NameB6Ng01-108D04
Chromosome3 (Build37)
Map Location 52,587,237 - 52,760,998
singlet/doubletdoublet
Overlap genenone
Upstream geneMaml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832
Downstream geneCog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108D04.bB6Ng01-108D04.g
ACCDH915443DH915444
length1,2011,103
definitionDH915443|Mus musculus domesticus DNA, BAC clone: B6Ng01-108D04, 5' end.DH915444|Mus musculus domesticus DNA, BAC clone: B6Ng01-108D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,587,237 - 52,588,451)(52,759,880 - 52,760,998)
sequence
gaattcacacaacagcatagaatcaaagcactgggctacagggcatccaa
agaccaaggagagctttccctgcttactggggactagacctatgtgatct
gtgagcaggacgtccatgcaaagtgcaaaaatgcagtgagtttcgtggaa
ggggaagtggaggggactcatgtctcaaagggttcccgggggaaagtcat
tgctgagccaaacataaggtatttgtaaaggtggagcctgcagttggctc
acagtgtttctatgcttgtgttcaggatgactacatacggatgctgttgg
tgatgtggaattctcttccacctgaaaatcatgtagactggaactcagct
aaacgtaaccccttggaagcacagttgagaagcaccaagacatgttgctt
ctgaggaggatcctagaaaattgtaggacagtatttataccttaaaaaaa
atcacccttcttaaaatgtctagaggcatcttatacaaaatataggagta
ccacaaaaggaactggatttggacgtgttcatactttgtaagtgacggat
gcagagggagacaaatttttactttattttctgcatatttttaaattact
attatttgtagaatatgctttaaataatgaaaaaggtataagtataatga
tataacctttaaagctaaatactacaagctgccctcgtagtctgtatagc
tctgagttattaatgtagctatttagcatctcctaacaggaagacagtca
tgtatacaatagaaaccaggcaccacatagcaatttctttaaagatttaa
ataggaatggaaggaaaggaagaaatgtggccttaaaacagtcttctaca
tttttttttcacaaatcactttctttaaaaattgctttcatatgaaacca
tctaattttctgcatctaaatatttgaagtattgtatagaatataatacc
aactagcaatttactagaggagcagcctgcgggaagcgtcacagtttgac
ttttattgcattaaaactcactttcccgttgtctggctcagtgactttca
caaagcgcctcggtttattgtccttgtctccttgttttgaagctgttatt
atgtgagaacaataagaccctttaaacgaattatattccatagaattagt
taaaaacaatttgacacgtgggttgcgtggctttcgaaatagccttcagg
t
gaattcctcatctagaacaaggaggccatttagtgagttggaattagtgg
aaggtgttagtctcttggaagccaatgcctggataccctcggggagattt
ccaaacccttattcccttaggatcaaagttaagaaaacctgtttggatga
agataaggttcttagtgaagaccaagagatacaagggacgattggagggc
tacccaaataagttctttaagaggacagaactggggtctcaaaattggcc
ccaccaccacgggcatctgctgaggcaggtggctcgggagcccccagtgt
ttaggttccccttgagggcgctctggtgtctatagatgtgcttaagaaca
agagttgtcttcaacacgtagaactctggcccattcacttgcaggaactc
cggagtgagcgttgcccggtggaggagtgaacttggtgcactgctccgac
ccagctgagcttggagggaagcccagcctcaagctagcggcattgctctt
gaccaagtgcaaccgcttcagcctgtgactctggtatgggcatctctgag
ccgtgctccttgatgagagcgtgggtgccacgctgcagcaatgaaggtaa
ctgactgacgggcccttctgaggctcggccccaacagcaaggctggaaag
actgtgtctaggaaacatctgggcgttgtcaggatatgcagcggcactta
caaaagagaacagaacaaaagagcgcatacacttttaggtatttctacca
atctttttatttttttagttatttgctgttttttaatagaagaggaaatt
ttagcaggactaagcttcatgcaatattttcttccttagttattaaactt
tttttttttttaactacagaaatccttccaattacagatcaaagcacacg
aaaagaaacacttctagaatcaaaccagggttaagggtaggtagaggacg
aggactttgtggtttgttcagcctaaaggattgaggaatgatatttcaaa
tgaagactgaaggcagagctcatcaccgtgggacataatatgatatattg
acaggagaagagagatgctgaggtaggatagagccgcttgtgcctccacc
ata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_52587237_52588451
seq2: B6Ng01-108D04.b_44_1244

seq1  GAATTCACACAACAGCATAGAATCAAAGCACTGGGCTACAGGGCATCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACAACAGCATAGAATCAAAGCACTGGGCTACAGGGCATCCAA  50

seq1  AGACCAAGGAGAGCTTTCCCTGCTTACTGGGGACTAGACCTATGTGATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAAGGAGAGCTTTCCCTGCTTACTGGGGACTAGACCTATGTGATCT  100

seq1  GTGAGCAGGACGTCCATGCAAAGTGCAAAAATGCAGTGAGTTTCGTGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAGGACGTCCATGCAAAGTGCAAAAATGCAGTGAGTTTCGTGGAA  150

seq1  GGGGAAGTGGAGGGGACTCATGTCTCAAAGGGTTCCCGGGGGAAAGTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGTGGAGGGGACTCATGTCTCAAAGGGTTCCCGGGGGAAAGTCAT  200

seq1  TGCTGAGCCAAACATAAGGTATTTGTAAAGGTGGAGCCTGCAGTTGGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCCAAACATAAGGTATTTGTAAAGGTGGAGCCTGCAGTTGGCTC  250

seq1  ACAGTGTTTCTATGCTTGTGTTCAGGATGACTACATACGGATGCTGTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTTTCTATGCTTGTGTTCAGGATGACTACATACGGATGCTGTTGG  300

seq1  TGATGTGGAATTCTCTTCCACCTGAAAATCATGTAGACTGGAACTCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGGAATTCTCTTCCACCTGAAAATCATGTAGACTGGAACTCAGCT  350

seq1  AAACGTAACCCCTTGGAAGCACAGTTGAGAAGCACCAAGACATGTTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTAACCCCTTGGAAGCACAGTTGAGAAGCACCAAGACATGTTGCTT  400

seq1  CTGAGGAGGATCCTAGAAAATTGTAGGACAGTATTTATACCTTAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAGGATCCTAGAAAATTGTAGGACAGTATTTATACCTTAAAAAAA  450

seq1  ATCACCCTTCTTAAAATGTCTAGAGGCATCTTATACAAAATATAGGAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCTTCTTAAAATGTCTAGAGGCATCTTATACAAAATATAGGAGTA  500

seq1  CCACAAAAGGAACTGGATTTGGACGTGTTCATACTTTGTAAGTGACGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAAGGAACTGGATTTGGACGTGTTCATACTTTGTAAGTGACGGAT  550

seq1  GCAGAGGGAGACAAATTTTTACTTTATTTTCTGCATATTTTTAAATTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGGAGACAAATTTTTACTTTATTTTCTGCATATTTTTAAATTACT  600

seq1  ATTATTTGTAGAATATGCTTTAAATAATGAAAAAGGTATAAGTATAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTGTAGAATATGCTTTAAATAATGAAAAAGGTATAAGTATAATGA  650

seq1  TATAACCTTTAAAGCTAAATACTACAAGCTGCCCTCGTAGTCTGTATAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACCTTTAAAGCTAAATACTACAAGCTGCCCTCGTAGTCTGTATAGC  700

seq1  TCTGAGTTATTAATGTAGCTATTTAGCATCTCCTAACAGGAAGACAGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTATTAATGTAGCTATTTAGCATCTCCTAACAGGAAGACAGTCA  750

seq1  TGTATACAATAGAAACCAGGCACCACATAGCAATTTCTTTAAAGATTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACAATAGAAACCAGGCACCACATAGCAATTTCTTTAAAGATTTAA  800

seq1  ATAGGAATGGAAGGAAAGGAAGAAATGTGGCCTTAAAACAGTCTTCTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAATGGAAGGAAAGGAAGAAATGTGGCCTTAAAACAGTCTTCTACA  850

seq1  TTTTTTTTTCACAAATCACTTTCTTTAAAAAATTGCTTTCATATGAAACC  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTTTTTTTCACAAATCACTTTCTTT-AAAAATTGCTTTCATATGAAACC  899

seq1  ATCTAATTTTCTGCATCTAAATATTTTGAAGTATTGTATAGAATAATAAT  950
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  ATCTAATTTTCTGCATCTAAATA-TTTGAAGTATTGTATAGAAT-ATAAT  947

seq1  ACCAACTAGCAATTTACTAGAGGAGCAGCCTGCGGGAAGCGTCACAGTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTAGCAATTTACTAGAGGAGCAGCCTGCGGGAAGCGTCACAGTTT  997

seq1  GACTTTTATTGCATTAAAACCTCACTTTCCCGTTGTCTGGCTCAGGTGAC  1050
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  GACTTTTATTGCATTAAAA-CTCACTTTCCCGTTGTCTGGCTCA-GTGAC  1045

seq1  TTTCCACAAAGCG-CTCGGTTTATTGTTCCTTGTCTCCTTGTTATGAAGC  1099
      ||| ||||||||| |||||||||||| |||||||||||||||| ||||||
seq2  TTT-CACAAAGCGCCTCGGTTTATTG-TCCTTGTCTCCTTGTTTTGAAGC  1093

seq1  TGTTTATTAATGTGAGACCAATAAGACCCTTTAAACGGAATATAATTCGA  1149
      || ||||| |||||||| ||||||||||||||||||| | ||| |||| |
seq2  TG-TTATT-ATGTGAGAACAATAAGACCCTTTAAACGAATTAT-ATTCCA  1140

seq1  TAGAATTAGTTAAAGACAAATTGAGCACGTGTGGTTAGCTGTGCTTTCGA  1199
      |||||||||||||| |||| |||| |||||| |||| ||   ||||||||
seq2  TAGAATTAGTTAAAAACAATTTGA-CACGTG-GGTT-GCGTGGCTTTCGA  1187

seq1  AATTAGCCTATCAGGT  1215
      || |||||| ||||||
seq2  AA-TAGCCT-TCAGGT  1201

seq1: chr3_52759880_52760998
seq2: B6Ng01-108D04.g_68_1170 (reverse)

seq1  TATGGTTGAGGCACAACGTGGCTCTATCCTGACCTCAGCATCCTCCTCCT  50
      |||||| ||||||||| | ||||||||||| |||||||||||   || ||
seq2  TATGGTGGAGGCACAA-GCGGCTCTATCCT-ACCTCAGCATCTCTCTTCT  48

seq1  CCTCACTGTACAATATATCATATTTATGTCCCACGGTGATGAGCTCTGCC  100
      |    |||| |||||||||||| ||||||||||||||||||||||||| |
seq2  C----CTGT-CAATATATCATA-TTATGTCCCACGGTGATGAGCTCTG-C  91

seq1  CTTCAGTCTTCACTTTGAAATATCATTTCCTTCATTCCTCTAGGCTGAAC  150
      |||||||||||| ||||||||||||||  | ||| |||| ||||||||||
seq2  CTTCAGTCTTCA-TTTGAAATATCATT--CCTCAATCCTTTAGGCTGAAC  138

seq1  AAACCACAGAGTCCTTCGTCCTCTACCTACCCTTAACCCTGGTTTTGATT  200
      |||||||| ||||| ||||||||||||||||||||||||||| |||||||
seq2  AAACCACAAAGTCC-TCGTCCTCTACCTACCCTTAACCCTGG-TTTGATT  186

seq1  CTAGAAGTGTTTCTTTTCGTGTGCTTTGATCTGTAATTGGAAGGATTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGTGTTTCTTTTCGTGTGCTTTGATCTGTAATTGGAAGGATTTCT  236

seq1  GTAAGTTAAAAAAAAAAAAAGTTTAAATAACTAAGGAAGAAAATATTGCA  300
      || ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GT-AGTTAAAAAAAAAAAAAGTTT-AATAACTAAGGAAGAAAATATTGCA  284

seq1  TGAAGCTTAGTCCTGCTAAAATTTCCTCTTCTATTAAAAAACAGCAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTTAGTCCTGCTAAAATTTCCTCTTCTATTAAAAAACAGCAAATA  334

seq1  ACTAAAAAAATAAAAAGATTGGTAGAAATACCTAAAAGTGTATGCGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAAAATAAAAAGATTGGTAGAAATACCTAAAAGTGTATGCGCTCT  384

seq1  TTTGTTCTGTTCTCTTTTGTAAGTGCCGCTGCATATCCTGACAACGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTGTTCTCTTTTGTAAGTGCCGCTGCATATCCTGACAACGCCCA  434

seq1  GATGTTTCCTAGACACAGTCTTTCCAGCCTTGCTGTTGGGGCCGAGCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTCCTAGACACAGTCTTTCCAGCCTTGCTGTTGGGGCCGAGCCTC  484

seq1  AGAAGGGCCCGTCAGTCAGTTACCTTCATTGCTGCAGCGTGGCACCCACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGCCCGTCAGTCAGTTACCTTCATTGCTGCAGCGTGGCACCCACG  534

seq1  CTCTCATCAAGGAGCACGGCTCAGAGATGCCCATACCAGAGTCACAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATCAAGGAGCACGGCTCAGAGATGCCCATACCAGAGTCACAGGCT  584

seq1  GAAGCGGTTGCACTTGGTCAAGAGCAATGCCGCTAGCTTGAGGCTGGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCGGTTGCACTTGGTCAAGAGCAATGCCGCTAGCTTGAGGCTGGGCT  634

seq1  TCCCTCCAAGCTCAGCTGGGTCGGAGCAGTGCACCAAGTTCACTCCTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCAAGCTCAGCTGGGTCGGAGCAGTGCACCAAGTTCACTCCTCCA  684

seq1  CCGGGCAACGCTCACTCCGGAGTTCCTGCAAGTGAATGGGCCAGAGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGCAACGCTCACTCCGGAGTTCCTGCAAGTGAATGGGCCAGAGTTCT  734

seq1  ACGTGTTGAAGACAACTCTTGTTCTTAAGCACATCTATAGACACCAGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTTGAAGACAACTCTTGTTCTTAAGCACATCTATAGACACCAGAGC  784

seq1  GCCCTCAAGGGGAACCTAAACACTGGGGGCTCCCGAGCCACCTGCCTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCAAGGGGAACCTAAACACTGGGGGCTCCCGAGCCACCTGCCTCAG  834

seq1  CAGATGCCCGTGGTGGTGGGGCCAATTTTGAGACCCCAGTTCTGTCCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCCCGTGGTGGTGGGGCCAATTTTGAGACCCCAGTTCTGTCCTCT  884

seq1  TAAAGAACTTATTTGGGTAGCCCTCCAATCGTCCCTTGTATCTCTTGGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACTTATTTGGGTAGCCCTCCAATCGTCCCTTGTATCTCTTGGTC  934

seq1  TTCACTAAGAACCTTATCTTCATCCAAACAGGTTTTCTTAACTTTGATCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTAAGAACCTTATCTTCATCCAAACAGGTTTTCTTAACTTTGATCC  984

seq1  TAAGGGAATAAGGGTTTGGAAATCTCCCCGAGGGTATCCAGGCATTGGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGAATAAGGGTTTGGAAATCTCCCCGAGGGTATCCAGGCATTGGCT  1034

seq1  TCCAAGAGACTAACACCTTCCACTAATTCCAACTCACTAAATGGCCTCCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAGACTAACACCTTCCACTAATTCCAACTCACTAAATGGCCTCCT  1084

seq1  TGTTCTAGATGAGGAATTC  1119
      |||||||||||||||||||
seq2  TGTTCTAGATGAGGAATTC  1103