BAC Information

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BAC

Clone NameB6Ng01-108H03
Chromosome4 (Build37)3 (Build37)
Map Location 10,665,227 - 10,665,75646,578,811 - 46,579,978
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGdf6, 4930448K20Rik, LOC666840
Downstream gene1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108H03.bB6Ng01-108H03.g
ACCDH915630DH915631
length1,0451,153
definitionDH915630|Mus musculus domesticus DNA, BAC clone: B6Ng01-108H03, 5' end.DH915631|Mus musculus domesticus DNA, BAC clone: B6Ng01-108H03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,665,227 - 10,665,756)(46,578,811 - 46,579,978)
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaccgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgatttct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctatcttgtgaaatagtttgtgcagacctgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggcttttttttggctgggagactattaataactgcttctatttc
tttaggggatatgggactgtttagaaggtcaacttgatcctgattcaact
ttggtacctggtatctgtccagaaatttgtccatttcgtcccggttttcc
agttttgttgagtataagcttttgtagaaggatctgatggtgttttggat
ttcttcaggatctgttgttatgtctcccttttcatttctgattttgttga
ttaggattttgtccctttgccctctagtgagtctagctaagggcttatct
atcttgatgattttctcaaagaaccaactcctcatttggttaattctttg
aatagttcctcttgtttccacttggttaatttcacccctgagtttgatta
tttcctgccgtatactcctcttgggtgaatttgcttcctttttttctaga
gttttagatgtgttgtcaagctgctagtatgtgctctctcccgtttcttc
tggaggtactcagagctatgagtttccctcttagaaatgctttcattgtg
tcccaaaggtttgggtacgttgtgcttcatttcattaaactctaa
gaattcaaaacgacaactcagggaattcagagctcatcactgtgacatga
aaagcttgacttctcagctagattctttgcttcctccctctctgtcattt
cctaggcctttctgtctcaaatagatcccttaccaattccaaaacagctg
gcctaattcatctctcgaaaatggcaatgatcccctagtaacaaatctcg
ggtgcacaggtgtttgaaggaatcctagatatagctaagcaggagccaaa
ttccaggtgaaatcacctataaaggttataactatgagaccaaaaattgc
ctactaatcttgcttctaaaggtttatggctcaaggctactcttaagaac
cttctttctcaaagtgagtctccattatcctccactgcaactgttcggga
gatagtttggtggagctcagaagtataatgactgcagagatgcagcctct
gtgtggaacacctgaaagttttatattccttattatcatgaaacagtttc
agtgacgttctacagtttcctgagaaggagtaagagatacactctcttgt
ccttgatattcttaccgttgtctatccatctgatagcagatgcttttcct
ataatttctctgagcaaaacgagtgcactttctgctttgatgcaaatcaa
catggatccaaaataataatttatttgcattgcagataagacaaatccgt
gttttataaaagtctatttttctttgactagctgaattttttctcattgc
ccttttcctatcttgtccttatataaatcaggaaccatgcacgtgcactg
tacctcagtgattcgaagctttattaattaattattaattagtgtccatg
taaaattgaatcaagggaagcatttgtcatgaatggagaataaaaaccta
gaaactagacttggaataatctcgataattctgggattttggttgctttc
tttttccttaatattttggactgaagagatttacccatctttttaacatg
tttattttgcatgttttcaagatgtaatcatggtgacatcctaaacttag
caagcttgctccaaggttatttgatgtttatctaagtcttagtagtaagt
caaatgtataggaggtgcgacgccctgtattcacgaagggaaatttgtat
gac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_10665227_10665756
seq2: B6Ng01-108H03.b_45_575 (reverse)

seq1  TGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTA  50

seq1  ATAGTCTCCCAGCC-AAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGA  99
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATAGTCTCCCAGCCAAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGA  100

seq1  GTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTAT  149
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGGTCTGCACAAACTAT  150

seq1  TTCACAAGATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAGATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCC  200

seq1  ACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAA  250

seq1  CTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTTAATAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTTAATAAAA  300

seq1  TTCTCGCTAACCGAATCCAAGAACACATTAAAGAAATCATCCATCCTGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGCTAACCGAATCCAAGAACACATTAAAGAAATCATCCATCCTGAC  350

seq1  CAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATC  400

seq1  CATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGA  450

seq1  TCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTC  499
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCGGTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTC  500

seq1  ATGATAAAAGTTTTGGAAAGATCAGGAATTC  530
      |||||||||||||||||||||||||||||||
seq2  ATGATAAAAGTTTTGGAAAGATCAGGAATTC  531

seq1: chr3_46578811_46579978
seq2: B6Ng01-108H03.g_67_1219

seq1  GAATTCAAAACGACAACTCAGGGAATTCAGAGCTCATCACTGTGACATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACGACAACTCAGGGAATTCAGAGCTCATCACTGTGACATGA  50

seq1  AAAGCTTGACTTCTCAGCTAGATTCTTTGCTTCCTCCCTCTCTGTCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTGACTTCTCAGCTAGATTCTTTGCTTCCTCCCTCTCTGTCATTT  100

seq1  CCTAGGCCTTTCTGTCTCAAATAGATCCCTTACCAATTCCAAAACAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCCTTTCTGTCTCAAATAGATCCCTTACCAATTCCAAAACAGCTG  150

seq1  GCCTAATTCATCTCTCGAAAATGGCAATGATCCCCTAGTAACAAATCTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATTCATCTCTCGAAAATGGCAATGATCCCCTAGTAACAAATCTCG  200

seq1  GGTGCACAGGTGTTTGAAGGAATCCTAGATATAGCTAAGCAGGAGCCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACAGGTGTTTGAAGGAATCCTAGATATAGCTAAGCAGGAGCCAAA  250

seq1  TTCCAGGTGAAATCACCTATAAAGGTTATAACTATGAGACCAAAAATTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGTGAAATCACCTATAAAGGTTATAACTATGAGACCAAAAATTGC  300

seq1  CTACTAATCTTGCTTCTAAAGGTTTATGGCTCAAGGCTACTCTTAAGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAATCTTGCTTCTAAAGGTTTATGGCTCAAGGCTACTCTTAAGAAC  350

seq1  CTTCTTTCTCAAAGTGAGTCTCCATTATCCTCCACTGCAACTGTTCGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTCAAAGTGAGTCTCCATTATCCTCCACTGCAACTGTTCGGGA  400

seq1  GATAGTTTGGTGGAGCTCAGAAGTATAATGACTGCAGAGATGCAGCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTTTGGTGGAGCTCAGAAGTATAATGACTGCAGAGATGCAGCCTCT  450

seq1  GTGTGGAACACCTGAAAGTTTTATATTCCTTATTATCATGAAACAGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAACACCTGAAAGTTTTATATTCCTTATTATCATGAAACAGTTTC  500

seq1  AGTGACGTTCTACAGTTTCCTGAGAAGGAGTAAGAGATACACTCTCTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACGTTCTACAGTTTCCTGAGAAGGAGTAAGAGATACACTCTCTTGT  550

seq1  CCTTGATATTCTTACCGTTGTCTATCCATCTGATAGCAGATGCTTTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATATTCTTACCGTTGTCTATCCATCTGATAGCAGATGCTTTTCCT  600

seq1  ATAATTTCTCTGAGCAAAACGAGTGCACTTTCTGCTTTGATGCAAATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCTCTGAGCAAAACGAGTGCACTTTCTGCTTTGATGCAAATCAA  650

seq1  CATGGATCCAAAATAATAATTTATTTGCATTGCAGATAAGACAAATCCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATCCAAAATAATAATTTATTTGCATTGCAGATAAGACAAATCCGT  700

seq1  GTTTTATAAAAGTCTATTTTTCTTTGACTAGCTGAATTTTTTCTCATTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATAAAAGTCTATTTTTCTTTGACTAGCTGAATTTTTTCTCATTGC  750

seq1  CCTTTTCCTATCTTGTCCTTATATAAATCAGGAACCATGCACGTGCACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCCTATCTTGTCCTTATATAAATCAGGAACCATGCACGTGCACTG  800

seq1  TACCTCAGTGATTCGAAGCTTTATTAATTAATTATTAATTAGTGTCCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAGTGATTCGAAGCTTTATTAATTAATTATTAATTAGTGTCCATG  850

seq1  TAAAATTGAATCAAGGGAAGCATTTGTCATGAATGGAGAATAAAAAACCT  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAAAATTGAATCAAGGGAAGCATTTGTCATGAATGGAGAAT-AAAAACCT  899

seq1  AGAAACTAGACTTGGAATAATCTCGATAATTCTGGGATTTTGGTTGCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTAGACTTGGAATAATCTCGATAATTCTGGGATTTTGGTTGCTTT  949

seq1  CTTTTTCCTTAATATTTTGGACTGAAGAGATTTACCCATCTTTTTAAACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTTTTCCTTAATATTTTGGACTGAAGAGATTTACCCATCTTTTT-AACA  998

seq1  TGTTTTATTTTTGCCATGTTTTCAAAGATGTAATCATGGTGACATCCCTA  1050
      || ||||||||   ||||||||| ||||||||||||||||||||| ||||
seq2  TG-TTTATTTT--GCATGTTTTC-AAGATGTAATCATGGTGACAT-CCTA  1043

seq1  AACTTAGCAAAGCCTGCTCCAAGGTTATTTGATGTTTATCTTAAGTCTTA  1100
      |||||||| |||| |||||||||||||||||||||||||| |||||||||
seq2  AACTTAGC-AAGCTTGCTCCAAGGTTATTTGATGTTTATC-TAAGTCTTA  1091

seq1  GTAGTAAAGTCAAAATGTATAGGAGGTTGCAGACAGCCTTGTATTCACAG  1150
      ||||| ||||| |||||||||||||| ||| ||| ||| ||||||||| |
seq2  GTAGT-AAGTC-AAATGTATAGGAGG-TGC-GAC-GCCCTGTATTCAC-G  1135

seq1  ATGGAAAATTTGTATGAC  1168
      | || |||||||||||||
seq2  AAGGGAAATTTGTATGAC  1153