BAC Information

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BAC

Clone NameB6Ng01-108I04
Chromosome3 (Build37)8 (Build37)
Map Location 41,059,244 - 41,059,771107,290,071 - 107,291,182
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108I04.bB6Ng01-108I04.g
ACCDH915678DH915679
length9691,102
definitionDH915678|Mus musculus domesticus DNA, BAC clone: B6Ng01-108I04, 5' end.DH915679|Mus musculus domesticus DNA, BAC clone: B6Ng01-108I04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,244 - 41,059,771)(107,290,071 - 107,291,182)
sequence
gaattcattgtttttaatagctgagtagtactccattttgtaaatgtacc
acattttctgtatccatttctctgttgtagggcatctgggttctttccag
cttctggctattataaataaggctgctatgaacatagtggagcatgtatc
cttcttaccggttgggacatcttcttgatatatgcccaggagaggtattg
ctggattctctggtagtactatgtccaattttctaaggaaccgccagact
gatttccagagtggttgtacaacttgcaatcccaccagcaatggaggaat
gttcttctttctccacatccttgccagcatctgctgtcacctgaattttt
gatcttagccattctgactggtgtgaggtggaatctcagggttgttttga
tttgcatttccctgatgattaaggatgttgaacattttttcaggtgcttc
tctgccattcggtattcctcaggtgagaattctttgttcagttctgagcc
ccattttttaatggggttatttgattttctggagtccacattcttgagtt
ccttatatatattggatattagtcccctatcagatttgggataggtaaag
atcctttcccaatctgttggtggcctttttgtcttattgacggtgtcttt
tgctttgcagaagctttgcaattttatgaggtcccatttatcgattctcg
atcttacagcataagccattgcttttgtattcaggaatttttcccctgta
cccatatcttcaaggctttcctctcctctataagtttcagtgtctctggt
tttatgtggagttccttaatccacttagatttgaccttagtacaaggaga
tagaatgggatcaattcgcaatcctctacatgataaccgccagttatgcc
agccaccatttggtggaaaatgctgtctttcttccaccgggatggtttta
gctcccttggtcaaagatc
gaattcctatgtgccagagggaaggaaggcattctgagatggaaatgatc
ttaggattagtaagggaaagatgggcaaagggtatgcttggaacctggca
ggtagaggaggaaagaagagaccataccccagatcaggttaagcagggct
ggtaagcatgaaacaatagctggaagctgcatggtgtggtcaggaccagg
acctttgtcctcctcctgtctgaagttgacttcactgagaaggagttacc
gagcaggaggaggactgagtgagctatctgagagcctttagctaaaggcc
tggctggaataaagattaataagtctgtctttatttaaccactggcgagt
ccagaaagtcttgctatgttattccaagtaatcagcctttttatacatgt
atcaaaactgaatatacatgtatcaaaactattctggatcagtatttcat
aacatatgtgagcagatggccctctgtcactctaattggtggtggaaaag
aattcagagctctgtttctctttgctggcctcgctaccaggcgtttgttc
ttggtcatatggtagtctccttcctctgtgccaagatccacttagacagg
gataacttctagatgctgactcctggtcgttaaacaaagatctgggctta
gatattatgggttttatctataggtacttccctctgaggggaaagagaag
ctgtccccaccacatggctgtacatgcaatggatgctgatcactctgatt
gtttaatcatcatatccatacctctgggctcccattccgccacctccttt
cattgctcatactagccctaactggtagacaaggcttggagtcatcaggg
ctctgagtgacgtttttctcatcctgctggaagaaggtatttgcagtaac
tgttacatcaatggccagctccatagcccttgttccaccaggatagtgag
acctgcagttggacatgcagcctacatgggcgtggactgaaagtccacag
ctgaaatgttgatccagatcctgtcttcagatgatccagagatcaatggc
tgaggacaagtatatagacatgtaaggatgccacgttctgagtgcagtga
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059244_41059771
seq2: B6Ng01-108I04.b_487_1012 (reverse)

seq1  GATCTTCGA-CAAGGGAGCTAAAACCAT-CCAGTGGAAAAAAGACAGCAT  48
      |||||| || |||||||||||||||||| || |||||| |||||||||||
seq2  GATCTTTGACCAAGGGAGCTAAAACCATCCCGGTGGAAGAAAGACAGCAT  50

seq1  TTT-CAACAAATGGT-GCTGGCACAACTGGTTGTTATCATGTAGAAGAAT  96
      ||| || |||||||| ||||||| ||||||  ||||||||||||| || |
seq2  TTTCCACCAAATGGTGGCTGGCATAACTGGCGGTTATCATGTAGAGGATT  100

seq1  GCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGA  146
      ||||||||||||  | ||||||||||||||||||||||||||||||||||
seq2  GCGAATTGATCCCATTCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGA  150

seq1  TCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAA  196
      | ||||||| ||||||||||||||||||||||||||||||||||||||  
seq2  TTAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGA--  198

seq1  GTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAG  246
           | ||||||||||||||||||  |||||||||||||||||| ||| 
seq2  -----GGAAAGCCTTGAAGATATGGGTACAGGGGAAAAATTCCTGAATAC  243

seq1  AACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCA  296
      || ||||||||||| ||||||||||| |||||| || |||||||||||||
seq2  AAAAGCAATGGCTTATGCTGTAAGATCGAGAATCGATAAATGGGACCTCA  293

seq1  TGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAA  346
      | ||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  TAAAATTGCAAAGCTTCTGCAAAGCAAAAGACACCGTCAATAAGACAAAA  343

seq1  AGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAG  395
      ||| |||||||||||||||||||||||||||||||||| ||||| |||||
seq2  AGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCCAAATCTGATAG  393

seq1  GGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAA  445
      |||||||||||||||||||||| | ||||||||||| ||||| |||||||
seq2  GGGACTAATATCCAATATATATAAGGAACTCAAGAATGTGGACTCCAGAA  443

seq1  AATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATTA  495
      |||||||||||||||||||||||||||||||||| || ||||||||||| 
seq2  AATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  493

seq1  TCACCTGAGGAATACCGAATGGCTGAGAAGCAC  528
      ||||||||||||||||||||||| |||||||||
seq2  TCACCTGAGGAATACCGAATGGCAGAGAAGCAC  526

seq1: chr8_107290071_107291182
seq2: B6Ng01-108I04.g_70_1171

seq1  GAATTCCTATGTGCCAGAGGGAAGGAAGGCATTCTGAGATGGAAATGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGTGCCAGAGGGAAGGAAGGCATTCTGAGATGGAAATGATC  50

seq1  TTAGGATTAGTAAGGGAAAGATGGGCAAAGGGTATGCTTGGAACCTGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATTAGTAAGGGAAAGATGGGCAAAGGGTATGCTTGGAACCTGGCA  100

seq1  GGTAGAGGAGGAAAGAAGAGACCATACCCCAGATCAGGTTAAGCAGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGGAGGAAAGAAGAGACCATACCCCAGATCAGGTTAAGCAGGGCT  150

seq1  GGTAAGCATGAAACAATAGCTGGAAGCTGCATGGTGTGGTCAGGACCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGCATGAAACAATAGCTGGAAGCTGCATGGTGTGGTCAGGACCAGG  200

seq1  ACCTTTGTCCTCCTCCTGTCTGAAGTTGACTTCACTGAGAAGGAGTTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGTCCTCCTCCTGTCTGAAGTTGACTTCACTGAGAAGGAGTTACC  250

seq1  GAGCAGGAGGAGGACTGAGTGAGCTATCTGAGAGCCTTTAGCTAAAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGAGGAGGACTGAGTGAGCTATCTGAGAGCCTTTAGCTAAAGGCC  300

seq1  TGGCTGGAATAAAGATTAATAAGTCTGTCTTTATTTAACCACTGGCGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGAATAAAGATTAATAAGTCTGTCTTTATTTAACCACTGGCGAGT  350

seq1  CCAGAAAGTCTTGCTATGTTATTCCAAGTAATCAGCCTTTTTATACATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAGTCTTGCTATGTTATTCCAAGTAATCAGCCTTTTTATACATGT  400

seq1  ATCAAAACTGAATATACATGTATCAAAACTATTCTGGATCAGTATTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAACTGAATATACATGTATCAAAACTATTCTGGATCAGTATTTCAT  450

seq1  AACATATGTGAGCAGATGGCCCTCTGTCACTCTAATTGGTGGTGGAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATGTGAGCAGATGGCCCTCTGTCACTCTAATTGGTGGTGGAAAAG  500

seq1  AATTCAGAGCTCTGTTTCTCTTTGCTGGCCTCGCTACCAGGCGTTTGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGAGCTCTGTTTCTCTTTGCTGGCCTCGCTACCAGGCGTTTGTTC  550

seq1  TTGGTCATATGGTAGTCTCCTTCCTCTGTGCCAAGATCCACTTAGACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCATATGGTAGTCTCCTTCCTCTGTGCCAAGATCCACTTAGACAGG  600

seq1  GATAACTTCTAGATGCTGACTCCTGGTCGTTAAACAAAGATCTGGGCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTTCTAGATGCTGACTCCTGGTCGTTAAACAAAGATCTGGGCTTA  650

seq1  GATATTATGGGTTTTATCTATAGGTACTTCCCTCTGAGGGGAAAGAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTATGGGTTTTATCTATAGGTACTTCCCTCTGAGGGGAAAGAGAAG  700

seq1  CTGTCCCCACCACATGGCTGTACATGCAATGGATGCTGATCACTCTGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCCACCACATGGCTGTACATGCAATGGATGCTGATCACTCTGATT  750

seq1  GTTTAATCATCATATCCATACCTCTGGGCTCCCATTCCGCCACCTCC-TT  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTTTAATCATCATATCCATACCTCTGGGCTCCCATTCCGCCACCTCCTTT  800

seq1  CATTGCTCATACTAGCCCTAACTGGTAGACAAGGCTTGGAGTCATCAGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTCATACTAGCCCTAACTGGTAGACAAGGCTTGGAGTCATCAGGG  850

seq1  CTCTGAGTGACGTTTTTCTCATCCTGCTGGAAGAAGGTATTTGCAGTAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTGACGTTTTTCTCATCCTGCTGGAAGAAGGTATTTGCAGTAAC  900

seq1  TGTAACATCAATGGCCAGCTCCAATAGCCCTTGTTCCACCAGGATAAGTG  949
      ||| |||||||||||||||||| |||||||||||||||||||||| ||||
seq2  TGTTACATCAATGGCCAGCTCC-ATAGCCCTTGTTCCACCAGGAT-AGTG  948

seq1  AGACCTGCAGTTGGACATGCAGCCTACATGGGCCGTGAACTGAAAGTCCA  999
      |||||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  AGACCTGCAGTTGGACATGCAGCCTACATGGG-CGTGGACTGAAAGTCCA  997

seq1  CAGGCTGAAATGTTGGATCCAGATCCTGTCCTCAGATGATCCAGGAGATC  1049
      || ||||||||||| ||||||||||||||| |||||||||||| ||||||
seq2  CA-GCTGAAATGTT-GATCCAGATCCTGTCTTCAGATGATCCA-GAGATC  1044

seq1  AAATGGGCTGAGGACAAGTATATAGAACATGTAAGGATGGCACTGTCATG  1099
      ||   |||||||||||||||||||| ||||||||||||| ||| ||  ||
seq2  AA--TGGCTGAGGACAAGTATATAG-ACATGTAAGGATGCCAC-GTTCTG  1090

seq1  AGTGCAAGTGAGG  1112
      ||||| |||||||
seq2  AGTGC-AGTGAGG  1102