BAC Information

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BAC

Clone NameB6Ng01-108K08
Chromosome3 (Build37)
Map Location 131,839,911 - 132,006,928
singlet/doubletdoublet
Overlap geneDkk2
Upstream geneLef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1, Olfr375-ps1
Downstream geneLOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik, Ppa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108K08.bB6Ng01-108K08.g
ACCDH915778DH915779
length1,1161,138
definitionDH915778|Mus musculus domesticus DNA, BAC clone: B6Ng01-108K08, 5' end.DH915779|Mus musculus domesticus DNA, BAC clone: B6Ng01-108K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,839,911 - 131,841,038)(132,005,770 - 132,006,928)
sequence
gaattcctgcagctcatcaatgtttcataatgcttagttcaactaccata
catgtgaccaactctctgcactagataacgtgtgctacaacttctgcttt
cacagctagactccaccgattaacaatgtcaagagtccctgaaacctgca
gctttcttgaggcacagctttgttgagacctgttgaatagacatcatatt
aatgaatttgaaaccaccttttttaaaatctcaaattcaccccatagagg
aaaaaatcaccagggaaatatctaaagatatgctacagtttggggaatcg
actccatgggtaaagtgctcaccatgaggacaggagttccaatcctcctc
acttctgtaaatgctgggtagagcacggcagtttatctgtcactccagcc
tcagaagacagacataaggagatccctcatagaaagttggatagcaagtc
tagccatatcagctagatctaggctggcttgagtgatcctgctcaaagaa
taaggtaggacagggatagaggatgatttccaacacaatctggtctttca
gattcattcatacacatgtacttgcccatacacacacacatatactccca
cacaagaaaaaagcatgcatatatgcacacacacatataaacacatagag
agaaatggagaaaaactagactgtgatgaactaaagatgaacacagtact
gctgtgtcattgaactttatattcagatggtagataatggaaaaagacaa
aggcagacttatgggtgtaaagagagaacaaactggtacaaatctaagac
ttctcatcatcagtggcagtataatgcaggataatgtaagtgaagtgttt
tctgtgattttgattataaagtagaaattgctcccaaaaaccctagtaac
ccctttggccttgttttacataggacatgaaagagaccatgcctacggtc
atcagactgcattgatgggttttgttgtgctcgccacttctggaccaaaa
tctgcaaaccagtgctcatcaggggaagtctgtatcaacacgcagaaggt
tcgcatggctggaagatttccagaaggtgtgactgtgcaaaggctgtctg
caaagtgtgaagatgc
gaattccaaagaagcttgtaagtacatcttggaagaagtactgagtaaca
cgtagtcctctggataatgtgtggctaaacaaccaggctggtcataaagt
acagggctagatgtggtgtgtctgtggagacttctgagaacaccacaagc
acagagcctgcagctccagacgcaggaggatgcctctgaagaatggaatc
cttgattttaattcctcacccacagcagagggggagtcagagcttgccct
cgaaggaagacagaacctgcttttcttagtaatagctgtcagccatcttg
tctgattcttagacacagtctttctacagactggaaacacttgttagaga
tttgctcactgtcaaaacaaaaccacatcctggtttctgtgatggtaaat
actgtggattaggccatcagataaaggggttgaaaatacatgatttttac
ataatccccaccagtaagggcagttatgtctttccttatctgaattctat
gtgtaaacaggttaaatactagtcagggtacataaaaaggttgatgtttg
gatttttctgttctttttgacaaatacaggcaaaactacatggttcactg
tgtctttaggctacatcttctgccctgggctatgagtgtgttctttagtt
tccataattttttttaatgaagtggcaaactttatttgaacataaaattt
gatgcattgctgtgactcaaatgaacaggaaagatttaagtcaaaggaaa
ttgtatttattctagcagttctaaactctgagtagtaacttttcagaagg
atttatctatttttatgtgtatgagagctttgctagcacacatggctgct
gcacaaatgtatacctgcagaggtaagaggcaggcagtctatccatagaa
caggaactgtggatggcaggagttataggtagaggctgggaactgaacag
ttcttttaacactaagccatcttccaagaatggtactcgtatttcacttc
agttattggtacatatgtcaccacagtatgacacttcagtcaatcattca
tttcataatacagctgtttgtgtttggaaacaaagtagccctgactttct
tcagggttcggatgcaggtagctattcaatttctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_131839911_131841038
seq2: B6Ng01-108K08.b_46_1161

seq1  GAATTCCTGCAGCTCATCAATGTTTCATAATGCTTAGTTCAACTACCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCAGCTCATCAATGTTTCATAATGCTTAGTTCAACTACCATA  50

seq1  CATGTGACCAACTCTCTGCACTAGATAACGTGTGCTACAACTTCTGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGACCAACTCTCTGCACTAGATAACGTGTGCTACAACTTCTGCTTT  100

seq1  CACAGCTAGACTCCACCGATTAACAATGTCAAGAGTCCCTGAAACCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTAGACTCCACCGATTAACAATGTCAAGAGTCCCTGAAACCTGCA  150

seq1  GCTTTCTTGAGGCACAGCTTTGTTGAGACCTGTTGAATAGACATCATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTGAGGCACAGCTTTGTTGAGACCTGTTGAATAGACATCATATT  200

seq1  AATGAATTTGAAACCACCTTTTTTAAAATCTCAAATTCACCCCATAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTTGAAACCACCTTTTTTAAAATCTCAAATTCACCCCATAGAGG  250

seq1  AAAAAATCACCAGGGAAATATCTAAAGATATGCTACAGTTTGGGGAATCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCACCAGGGAAATATCTAAAGATATGCTACAGTTTGGGGAATCG  300

seq1  ACTCCATGGGTAAAGTGCTCACCATGAGGACAGGAGTTCCAATCCTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATGGGTAAAGTGCTCACCATGAGGACAGGAGTTCCAATCCTCCTC  350

seq1  ACTTCTGTAAATGCTGGGTAGAGCACGGCAGTTTATCTGTCACTCCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTAAATGCTGGGTAGAGCACGGCAGTTTATCTGTCACTCCAGCC  400

seq1  TCAGAAGACAGACATAAGGAGATCCCTCATAGAAAGTTGGATAGCAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGACAGACATAAGGAGATCCCTCATAGAAAGTTGGATAGCAAGTC  450

seq1  TAGCCATATCAGCTAGATCTAGGCTGGCTTGAGTGATCCTGCTCAAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATATCAGCTAGATCTAGGCTGGCTTGAGTGATCCTGCTCAAAGAA  500

seq1  TAAGGTAGGACAGGGATAGAGGATGATTTCCAACACAATCTGGTCTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAGGACAGGGATAGAGGATGATTTCCAACACAATCTGGTCTTTCA  550

seq1  GATTCATTCATACACATGTACTTGCCCATACACACACACATATACTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATTCATACACATGTACTTGCCCATACACACACACATATACTCCCA  600

seq1  CACAAGAAAAAAGCATGCATATATGCACACACACATATAAACACATAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAAAAAAGCATGCATATATGCACACACACATATAAACACATAGAG  650

seq1  AGAAATGGAGAAAAACTAGACTGTGATGAACTAAAGATGAACACAGTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGAGAAAAACTAGACTGTGATGAACTAAAGATGAACACAGTACT  700

seq1  GCTGTGTCATTGAACTTTATATTCAGATGGTAGATAATGGAAAAAGACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTCATTGAACTTTATATTCAGATGGTAGATAATGGAAAAAGACAA  750

seq1  AGGCAGACTTATGGGTGTAAAGAGAGAACAAACTGGTACAAATCTAAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGACTTATGGGTGTAAAGAGAGAACAAACTGGTACAAATCTAAGAC  800

seq1  TTCTCATCATCAGTGGCAGTATAATGCAGGATAATGTAAGTGAAGTGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATCATCAGTGGCAGTATAATGCAGGATAATGTAAGTGAAGTGTTT  850

seq1  TCTGTGATTTTGATTATAAAGTAGAAATTGCTCCCAAAAACCCTAGTAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATTTTGATTATAAAGTAGAAATTGCTCCCAAAAACCCTAGTAAC  900

seq1  CCCTTTGGCCTTGTTTTACATAGGACATGAAGGAGACCCATGCCTACGGT  950
      ||||||||||||||||||||||||||||||| |||| |||||||||||||
seq2  CCCTTTGGCCTTGTTTTACATAGGACATGAAAGAGA-CCATGCCTACGGT  949

seq1  CATCAGACTGCATTGATGGGTTTTGTTGTGCTCGCCACTTCTGGACCAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGACTGCATTGATGGGTTTTGTTGTGCTCGCCACTTCTGGACCAAA  999

seq1  ATCTGCAAACCAGTGCTCCATCAGGGGGAAGTCTGTACCAAACAACGCAA  1050
      ||||||||||||||||| ||||| ||||||||||||| |||   |||| |
seq2  ATCTGCAAACCAGTGCT-CATCA-GGGGAAGTCTGTATCAA--CACGC-A  1044

seq1  GAAGGGTTCGCACGGGCTGGAGATTTTCCAG-AGGTGTGACTGTGCAAAG  1099
      ||| ||||||||  |||||||   ||||||| ||||||||||||||||||
seq2  GAA-GGTTCGCA-TGGCTGGAAGATTTCCAGAAGGTGTGACTGTGCAAAG  1092

seq1  GGCCTGTCCTGCAAAGTGTGGAAAGATGC  1128
      |  |||| ||||||||||||  |||||||
seq2  G--CTGT-CTGCAAAGTGTG--AAGATGC  1116

seq1: chr3_132005770_132006928
seq2: B6Ng01-108K08.g_68_1205 (reverse)

seq1  AGAGAAAAATTGAATAGCTACTTGCATCCAGAACACTGAAAGGAAAGTCA  50
      ||||| ||||||||||||||| ||||||| |||| |||||  ||||||||
seq2  AGAGAGAAATTGAATAGCTACCTGCATCC-GAACCCTGAA--GAAAGTCA  47

seq1  GGGGGCTACTTTTGTTTTCAAACACATACAGCTGTATTATGAAAATGGAA  100
        ||||||| ||||||| |||||||| |||||||||||||||||   |||
seq2  --GGGCTAC-TTTGTTTCCAAACACAAACAGCTGTATTATGAAA--TGAA  92

seq1  TGGATTGACTGAAGTTGTTCATACTGTGGTGACATATGTTACCAATAAAC  150
      | |||||||||||||   |||||||||||||||||||| ||||||| |||
seq2  T-GATTGACTGAAGT--GTCATACTGTGGTGACATATG-TACCAAT-AAC  137

seq1  TGAAGTGAAATACGGAGTTACCATTTCTGGGAAAGATGGCTTAGTGGTTA  200
      ||||||||||||| ||| |||||||  |||  ||||||||||||| ||||
seq2  TGAAGTGAAATAC-GAG-TACCATTCTTGG--AAGATGGCTTAGT-GTTA  182

seq1  AAAGAACTTGTTCAGTTCCCAGCCTCTACCTATAACTCCCTGCCATCCAC  250
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  AAAGAAC-TGTTCAGTTCCCAGCCTCTACCTATAACT-CCTGCCATCCAC  230

seq1  AGTTCCTGTTCTATTGGATAGACTGCCTGCCTCTTACCTCTGCAGGTATA  300
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTGTTCTA-TGGATAGACTGCCTGCCTCTTACCTCTGCAGGTATA  279

seq1  CATTTGTGCAGCAGCCATGTGTGCTAGCAAAGCTCTCATACACATAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGCAGCAGCCATGTGTGCTAGCAAAGCTCTCATACACATAAAAA  329

seq1  TAGATAAATCCTTCTGAAAAGTTACTACTCAGAGTTTAGAACTGCTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAATCCTTCTGAAAAGTTACTACTCAGAGTTTAGAACTGCTAGAA  379

seq1  TAAATACAATTTCCTTTGACTTAAATCTTTCCTGTTCATTTGAGTCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACAATTTCCTTTGACTTAAATCTTTCCTGTTCATTTGAGTCACAG  429

seq1  CAATGCATCAAATTTTATGTTCAAATAAAGTTTGCCACTTCATTAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCATCAAATTTTATGTTCAAATAAAGTTTGCCACTTCATTAAAAAA  479

seq1  AATTATGGAAACTAAAGAACACACTCATAGCCCAGGGCAGAAGATGTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGGAAACTAAAGAACACACTCATAGCCCAGGGCAGAAGATGTAGC  529

seq1  CTAAAGACACAGTGAACCATGTAGTTTTGCCTGTATTTGTCAAAAAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGACACAGTGAACCATGTAGTTTTGCCTGTATTTGTCAAAAAGAAC  579

seq1  AGAAAAATCCAAACATCAACCTTTTTATGTACCCTGACTAGTATTTAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATCCAAACATCAACCTTTTTATGTACCCTGACTAGTATTTAACC  629

seq1  TGTTTACACATAGAATTCAGATAAGGAAAGACATAACTGCCCTTACTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACACATAGAATTCAGATAAGGAAAGACATAACTGCCCTTACTGGT  679

seq1  GGGGATTATGTAAAAATCATGTATTTTCAACCCCTTTATCTGATGGCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTATGTAAAAATCATGTATTTTCAACCCCTTTATCTGATGGCCTA  729

seq1  ATCCACAGTATTTACCATCACAGAAACCAGGATGTGGTTTTGTTTTGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACAGTATTTACCATCACAGAAACCAGGATGTGGTTTTGTTTTGACA  779

seq1  GTGAGCAAATCTCTAACAAGTGTTTCCAGTCTGTAGAAAGACTGTGTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAAATCTCTAACAAGTGTTTCCAGTCTGTAGAAAGACTGTGTCTA  829

seq1  AGAATCAGACAAGATGGCTGACAGCTATTACTAAGAAAAGCAGGTTCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAGACAAGATGGCTGACAGCTATTACTAAGAAAAGCAGGTTCTGT  879

seq1  CTTCCTTCGAGGGCAAGCTCTGACTCCCCCTCTGCTGTGGGTGAGGAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCGAGGGCAAGCTCTGACTCCCCCTCTGCTGTGGGTGAGGAATT  929

seq1  AAAATCAAGGATTCCATTCTTCAGAGGCATCCTCCTGCGTCTGGAGCTGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAGGATTCCATTCTTCAGAGGCATCCTCCTGCGTCTGGAGCTGC  979

seq1  AGGCTCTGTGCTTGTGGTGTTCTCAGAAGTCTCCACAGACACACCACATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGTGCTTGTGGTGTTCTCAGAAGTCTCCACAGACACACCACATC  1029

seq1  TAGCCCTGTACTTTATGACCAGCCTGGTTGTTTAGCCACACATTATCCAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGTACTTTATGACCAGCCTGGTTGTTTAGCCACACATTATCCAG  1079

seq1  AGGACTACGTGTTACTCAGTACTTCTTCCAAGATGTACTTACAAGCTTCT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTACGTGTTACTCAGTACTTCTTCCAAGATGTACTTACAAGCTTCT  1129

seq1  TTGGAATTC  1159
      |||||||||
seq2  TTGGAATTC  1138