BAC Information

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BAC

Clone NameB6Ng01-108M18
Chromosome3 (Build37)
Map Location 82,060,552 - 82,188,642
singlet/doubletdoublet
Overlap geneMtap9
Upstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3
Downstream geneNpy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108M18.bB6Ng01-108M18.g
ACCDH915886DH915887
length1,0851,087
definitionDH915886|Mus musculus domesticus DNA, BAC clone: B6Ng01-108M18, 5' end.DH915887|Mus musculus domesticus DNA, BAC clone: B6Ng01-108M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,187,540 - 82,188,642)(82,060,552 - 82,061,644)
sequence
gaattcagttaagtcagctatgaagagaaaaaaaccaaagccctgttaga
tggattatggaaaaaattttatgtgatttagtcataggaatgccatctac
ttgcacaaagtataatattcatgggtattattacttaaaattaagaaaat
gagtctttgttttaaaataaagtaactaaatgtaacttgttaacatatgt
aaattaaaaccaagtatttattactcacacatgaagggcagctggatatt
gtaccttccaacctcacagttgatccctttctttaaacaatgcctacatg
aaacccccttccctagatcatcagtgagatcgaaagagtatgagaaatag
actaggttcctcaccaccattaacttcagtgctattgcatgcaggggctg
accacatctacaagactctcccctcccctccgtgcatttgtctctttcta
tgaggtcagaggcatgaggcacagaagcaagaataggcatgatgggaagg
gactgaggcagggatgcaggcctagagcatcccaactgctacaagctcag
atgcttgtgtcaagctcagaatcaaggtcagacatgagaggccacggggg
aatctgatctcagaggaggaaaggctgagcacaacaaggtgcactccagg
tggacgaggactgggaatgagaagcagaaaaggaagaaaaagtcagttaa
agttaaaattaaagggtcaagttcatctgcacggaacacataccagccac
ttttcgtattcactgatggcttgcttgtctttgtctttcttctcggctct
cttcagctcttcctttcttctctcatttattttctccttctccttttgct
tgaggagagcttcctttctctcactcctgtgtgggagaaacatgaaacac
tgggaggttaaagaagagtatatgcccggcgatggcctcctgtagctttg
aaagccatgaggtgagagtcggagagacctgtagcagtaactaatttcta
ggagctcagcattacatgaatacgaactgcgcatcgtgggggagtacatt
tcaaagcaggtaactgtccttcttttctcagcaac
gaattctaaagtgattatagaaatgaaatagctacaaaatgaggagtgtc
catgttggctgtggacagagttgggaaacatgatgacacctggtaggata
tgcttcctggagttacctaaagtggagaatgaaaaccttaggtaaacaag
ttcaactgttaacatttaattcttgcaatacaaacatttctgcttgaata
tcatgaagctaatctcttctaaaagaaattggctcttttaagagactgaa
attttaatgtgtttgaattcatagactatgggatattttgttatttatat
ttttaatgtgagaccttgaggatgaatgagaaaggaaagattgtaacttt
gtgttgtggtgatgtatttgtgtatcaagttggcaaaaagtcaattgtgg
tagagagtttcatgtgaacttgacacaatctaaaatcatctggtagaagg
caacctcaattaaggaaatgcctccaaagattgggtagtatgcaaaactg
taaggcaattgttttaaattagtgattgatgtgaaaggatccagcccatt
gtcagtggtgctacccctgggctgtatatgaaagcaggcttagcaagcca
tagggagcaagccagtaagcagcacccctccatcgcatctgcatcagctc
ctgcctcctggtgccatccttgctagagtttctgtcccaactttctttaa
cgatgaactatgtagacaaaaaaacctaaaagcaaaaaagcaaacaaaca
aacaaaaaaactttccttcccaagttgctttggccatggttgtcactaca
acaacagcaaccctaactaagacacacagaatacatgagacccagggttc
cattatcatagctgaataaaggagaagaaagatgaagaagaggaagaata
tattatattggcccatgaggaaagaaggtattctcttcagccaggatcaa
attacttgaaatgtagttaagcatagctgtgttgggatagtggacatatc
acaaattttttcagaaaaggtaagaccagaaaatctatagagatctcggg
aaaaaatggatgctagaagtagaataaaagaagtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82187540_82188642
seq2: B6Ng01-108M18.b_47_1131 (reverse)

seq1  GTTGCTGAGAAAAAGAAAGACAGTTTAACTGCTTTTGAAAAATGGTAACT  50
      ||||||||| ||||||| ||||| ||| |||||||    |||||   |||
seq2  GTTGCTGAG-AAAAGAAGGACAG-TTACCTGCTTT---GAAATG--TACT  43

seq1  CCCCCCACGATGCGCAGTTCGGTATTTCATGGTAATGCTTGAGGCTTCCC  100
       ||||||||||||||||||| ||| ||||| ||||||| ||| |||  ||
seq2  -CCCCCACGATGCGCAGTTC-GTA-TTCAT-GTAATGC-TGA-GCT--CC  85

seq1  TAAGAAATTAGTTACTGCTTACAGGTCTCCTCCGGCCTCTCAACCTCATG  150
      | |||||||||||||||| ||||||||| |||| | ||||| ||||||||
seq2  T-AGAAATTAGTTACTGC-TACAGGTCT-CTCC-GACTCTC-ACCTCATG  130

seq1  GCTTTCAAAGCTACAGGAGGCCATCGCC-GGCATATACTCTTCTTTAACC  199
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCTTTCAAAGCTACAGGAGGCCATCGCCGGGCATATACTCTTCTTTAACC  180

seq1  TCCCAGTGTTTCATG-TTCTCCCACACAGGAGTGAGAGAAAGGAAGCTCT  248
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCCCAGTGTTTCATGTTTCTCCCACACAGGAGTGAGAGAAAGGAAGCTCT  230

seq1  CCTCAAGCAAAAGGAGAAGGAGAAAATAAATGAGAGAAGAAAGGAAGAGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGCAAAAGGAGAAGGAGAAAATAAATGAGAGAAGAAAGGAAGAGC  280

seq1  TGAAGAGAGCCGAGAAGAAAGACAAAGACAAGCAAGCCATCAGTGAATAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGAGCCGAGAAGAAAGACAAAGACAAGCAAGCCATCAGTGAATAC  330

seq1  GAAAAGTGGCTGGTATGTGTTCCGTGCAGATGAACTTGACCCTTTAATTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGGCTGGTATGTGTTCCGTGCAGATGAACTTGACCCTTTAATTT  380

seq1  TAACTTTAACTGACTTTTTCTTCCTTTTCTGCTTCTCATTCCCAGTCCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTAACTGACTTTTTCTTCCTTTTCTGCTTCTCATTCCCAGTCCTC  430

seq1  GTCCACCTGGAGTGCACCTTGTTGTGCTCAGCCTTTCCTCCTCTGAGATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACCTGGAGTGCACCTTGTTGTGCTCAGCCTTTCCTCCTCTGAGATC  480

seq1  AGATTCCCCCGTGGCCTCTCATGTCTGACCTTGATTCTGAGCTTGACACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCCCCGTGGCCTCTCATGTCTGACCTTGATTCTGAGCTTGACACA  530

seq1  AGCATCTGAGCTTGTAGCAGTTGGGATGCTCTAGGCCTGCATCCCTGCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTGAGCTTGTAGCAGTTGGGATGCTCTAGGCCTGCATCCCTGCCT  580

seq1  CAGTCCCTTCCCATCATGCCTATTCTTGCTTCTGTGCCTCATGCCTCTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCTTCCCATCATGCCTATTCTTGCTTCTGTGCCTCATGCCTCTGA  630

seq1  CCTCATAGAAAGAGACAAATGCACGGAGGGGAGGGGAGAGTCTTGTAGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATAGAAAGAGACAAATGCACGGAGGGGAGGGGAGAGTCTTGTAGAT  680

seq1  GTGGTCAGCCCCTGCATGCAATAGCACTGAAGTTAATGGTGGTGAGGAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCAGCCCCTGCATGCAATAGCACTGAAGTTAATGGTGGTGAGGAAC  730

seq1  CTAGTCTATTTCTCATACTCTTTCGATCTCACTGATGATCTAGGGAAGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTATTTCTCATACTCTTTCGATCTCACTGATGATCTAGGGAAGGG  780

seq1  GGTTTCATGTAGGCATTGTTTAAAGAAAGGGATCAACTGTGAGGTTGGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCATGTAGGCATTGTTTAAAGAAAGGGATCAACTGTGAGGTTGGAA  830

seq1  GGTACAATATCCAGCTGCCCTTCATGTGTGAGTAATAAATACTTGGTTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAATATCCAGCTGCCCTTCATGTGTGAGTAATAAATACTTGGTTTT  880

seq1  AATTTACATATGTTAACAAGTTACATTTAGTTACTTTATTTTAAAACAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACATATGTTAACAAGTTACATTTAGTTACTTTATTTTAAAACAAA  930

seq1  GACTCATTTTCTTAATTTTAAGTAATAATACCCATGAATATTATACTTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATTTTCTTAATTTTAAGTAATAATACCCATGAATATTATACTTTG  980

seq1  TGCAAGTAGATGGCATTCCTATGACTAAATCACATAAAATTTTTTCCATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTAGATGGCATTCCTATGACTAAATCACATAAAATTTTTTCCATA  1030

seq1  ATCCATCTAACAGGGCTTTGGTTTTTTTCTCTTCATAGCTGACTTAACTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCTAACAGGGCTTTGGTTTTTTTCTCTTCATAGCTGACTTAACTG  1080

seq1  AATTC  1103
      |||||
seq2  AATTC  1085

seq1: chr3_82060552_82061644
seq2: B6Ng01-108M18.g_67_1153

seq1  GAATTCTAAAGTGATTATAGAAATGAAATAGCTACAAAATGAGGAGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAGTGATTATAGAAATGAAATAGCTACAAAATGAGGAGTGTC  50

seq1  CATGTTGGCTGTGGACAGAGTTGGGAAACATGATGACACCTGGTAGGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGGCTGTGGACAGAGTTGGGAAACATGATGACACCTGGTAGGATA  100

seq1  TGCTTCCTGGAGTTACCTAAAGTGGAGAATGAAAACCTTAGGTAAACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTGGAGTTACCTAAAGTGGAGAATGAAAACCTTAGGTAAACAAG  150

seq1  TTCAACTGTTAACATTTAATTCTTGCAATACAAACATTTCTGCTTGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTGTTAACATTTAATTCTTGCAATACAAACATTTCTGCTTGAATA  200

seq1  TCATGAAGCTAATCTCTTCTAAAAGAAATTGGCTCTTTTAAGAGACTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAGCTAATCTCTTCTAAAAGAAATTGGCTCTTTTAAGAGACTGAA  250

seq1  ATTTTAATGTGTTTGAATTCATAGACTATGGGATATTTTGTTATTTATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATGTGTTTGAATTCATAGACTATGGGATATTTTGTTATTTATAT  300

seq1  TTTTAATGTGAGACCTTGAGGATGAATGAGAAAGGAAAGATTGTAACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGTGAGACCTTGAGGATGAATGAGAAAGGAAAGATTGTAACTTT  350

seq1  GTGTTGTGGTGATGTATTTGTGTATCAAGTTGGCAAAAAGTCAATTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTGGTGATGTATTTGTGTATCAAGTTGGCAAAAAGTCAATTGTGG  400

seq1  TAGAGAGTTTCATGTGAACTTGACACAATCTAAAATCATCTGGTAGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGTTTCATGTGAACTTGACACAATCTAAAATCATCTGGTAGAAGG  450

seq1  CAACCTCAATTAAGGAAATGCCTCCAAAGATTGGGTAGTATGCAAAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCAATTAAGGAAATGCCTCCAAAGATTGGGTAGTATGCAAAACTG  500

seq1  TAAGGCAATTGTTTTAAATTAGTGATTGATGTGAAAGGATCCAGCCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCAATTGTTTTAAATTAGTGATTGATGTGAAAGGATCCAGCCCATT  550

seq1  GTCAGTGGTGCTACCCCTGGGCTGTATATGAAAGCAGGCTTAGCAAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGGTGCTACCCCTGGGCTGTATATGAAAGCAGGCTTAGCAAGCCA  600

seq1  TAGGGAGCAAGCCAGTAAGCAGCACCCCTCCATCGCATCTGCATCAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGCAAGCCAGTAAGCAGCACCCCTCCATCGCATCTGCATCAGCTC  650

seq1  CTGCCTCCTGGTGCCATCCTTGCTAGAGTTTCTGTCCCAACTTTCTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCTGGTGCCATCCTTGCTAGAGTTTCTGTCCCAACTTTCTTTAA  700

seq1  CGATGAACTATGTAGACAAAAAAACCTAAAAGCAAAAAAGCAAACAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGAACTATGTAGACAAAAAAACCTAAAAGCAAAAAAGCAAACAAACA  750

seq1  AACAAAAAAACTTTCCTTCCCAAGTTGCTTTGGCCATGGTTGTCACTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAAACTTTCCTTCCCAAGTTGCTTTGGCCATGGTTGTCACTACA  800

seq1  ACAACAGCAACCCTAACTAAGACACACAGAATACATGAGACCCAGGGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGCAACCCTAACTAAGACACACAGAATACATGAGACCCAGGGTTC  850

seq1  CATTATCATAGCTGAATAAAGGAGAAGAAAGATGAAGAAGAGGAAGAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCATAGCTGAATAAAGGAGAAGAAAGATGAAGAAGAGGAAGAATA  900

seq1  TATTATATTGGCCCATGAGGAAAGAAGGTATTCTCTTCAGCCA-GATCAA  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TATTATATTGGCCCATGAGGAAAGAAGGTATTCTCTTCAGCCAGGATCAA  950

seq1  ATTACTTGAAATGTAGTTAAAGCATAGCTGTGTTGGGATAAGTGGATCAT  999
      |||||||||||||||||| |||||||||||||||||||| |||||| |||
seq2  ATTACTTGAAATGTAGTT-AAGCATAGCTGTGTTGGGAT-AGTGGA-CAT  997

seq1  ATCACAAATATTTTCCAGAAAGGTAAGACCAGAAAATTCTTATAGAGATC  1049
      ||||||||| |||||   |||||||||||||||||||   ||||||||||
seq2  ATCACAAATTTTTTCAGAAAAGGTAAGACCAGAAAAT--CTATAGAGATC  1045

seq1  TTTGGGAAAATATTGATGCTAGAAGGTAGATATAAAGAAGTATA  1093
       | ||||||| || |||||||||| |||||   |||||||||||
seq2  -TCGGGAAAAAATGGATGCTAGAA-GTAGAATAAAAGAAGTATA  1087