BAC Information

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BAC

Clone NameB6Ng01-108N13
Chromosome3 (Build37)
Map Location 52,553,886 - 52,679,859
singlet/doubletdoublet
Overlap geneLOC100039832
Upstream geneMaml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762
Downstream geneCog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108N13.bB6Ng01-108N13.g
ACCDH915923DH915924
length1,0641,152
definitionDH915923|Mus musculus domesticus DNA, BAC clone: B6Ng01-108N13, 5' end.DH915924|Mus musculus domesticus DNA, BAC clone: B6Ng01-108N13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,678,770 - 52,679,859)(52,553,886 - 52,555,037)
sequence
gaattcctatcataatcctgcagataaagaaatattatcctggagtgatt
atgtagccagttagttccagccctagataaaaactcgtgtttcttgtctt
cccatctaaagcttcatcctctatactacttcatgtccctagagttcaac
tcaatcaagaattctagaagcagttagacttttaaactcttcaaattctt
caaaacactcagactatttcctcaggggggagttcttctaggtgacttct
ggggggaaaaaaacgtgcattgtatatcaatcgtctgagccatcctttag
acagaggaggaaacactgatgctaaaagcagagactggtaccctagccaa
agttatattgcctttgaacaaaggggacagaagcaaacaggaatgagaac
cacagaaaagtggcactggtgaccagttgagtctaatacagtaaaaaatg
gtgaatgcacaccccagagcaagatacaagacatcattcctagatttcaa
tattaaacacacacacacacacacacacacacacacacacacacacacac
acacacacaaaactaaactaaatcaaccaagagaaatcaaaggcagtgct
tgaaagtgccccaaggagtctttaggaaactaagcctttctctctaatta
atacatatgggattttaattttcttttaaggcaagaaaagtacagctgtg
cagagaatcacaaaggaggagggagaattccaccttgaaggatataaaat
gcatcccccctgagactgtgacagaaaggtgacctctggccagagcaacc
tggaggacaacaggtgacaagagagagcagcagtcccttgaagaaagtag
ataggtgcaaagattaaaggaagtcggaaggctttgcagcaagtctgacg
gataagaagtgagaaaaaagatagatttaatgattgatgtgacatttcct
gggggagaggactctgttattgtattatttttaaaagaagaaatacgata
tagctaagggatctacatgctctcctctgtccctttgacatctgggtctc
tctgtctctctctg
gaattcttatctatacctgtatacttgggctaagaattcttatctgcaat
cacatgtttgggctacgaatgaggcacataagacaacaagtagcctaatc
ctttgactgtcatgttcttcacacaacacggaactgattgaaccagcaag
ataaagaaaaggctctgttgagagaacaggaacgcatctagagagccaca
gaacaacaacggcaacaaaaaaagatgcagaagaccaaaagtaaaacatt
ccttacgtactccctaaaatttcagtctagacaattggataggtaacctg
caggcatgagtgtggatagagcaaaaataacaattaaaatcagcagaaac
aaaaatattcttgttttctgaaaatacaaaattcaggaggcaggatggaa
agatggcccagtagtagtgcttgctgcatacacgtgaggacccgagcttg
aactcttggaacctccttacagtctgggcacaacagagactgtctgtgtt
cccactgctgtagaggtggagaaaaaaccatgtgttactgggcagctggc
ttagttgaatcggtgagctcctggttcagtgagagacattgactcaaaag
gcaaggtggagacctactgaggaagacatatgatgctgacttctggcatc
cacacgcgtgttgatgtatgttcaagtatgtcacatgcaaagagggaggg
tctgtggctggtggttgtctaactgtaacaaaccccaagcagaaaaacca
gagggaggcagcctcccctcttctctctctttccccacagagtctctgcc
tttcttctctctggttgttcatccacaattctcgaaactgactgtctact
tgtttctcagcattaaaattgatgaaatgtttgccccagcttcagtgttg
catcatttatcatcatttatcacttcaccaccattggctctactctctgt
gtatatggtttgatgtctaaaagaagatgctctggtgacctagccagaat
tagagtgaagacgacaatcaatcatcgaaatcacttgaagttcaaagaag
gtctatgtgtgaacatcagggagagacagtggagtctagaggagaaagaa
tacttgtatagaatgggaatcatgttcatctaaacactcatgaacaacaa
ac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_52678770_52679859
seq2: B6Ng01-108N13.b_50_1113 (reverse)

seq1  CAGAGAGAGACAGAGAGACAGAAAGACAGAGAGAGACAGAGAGACACAGA  50
                                ||||||||||||||||||| ||||
seq2  --------------------------CAGAGAGAGACAGAGAGACCCAGA  24

seq1  TAGACAAAGAGACAGA-GAGAGCATGTAGATTCCTTAAGCTATATCGTAT  99
      | | ||||| |||||| |||||||||||||| |||| |||||||||||||
seq2  T-GTCAAAGGGACAGAGGAGAGCATGTAGATCCCTT-AGCTATATCGTAT  72

seq1  TTCTTCTTTTAAAAATAATACAATAACAGAGTTCCTCTCCCC--AGTAAT  147
      ||||||||||||||||||||||||||||||| ||||||||||   | |||
seq2  TTCTTCTTTTAAAAATAATACAATAACAGAG-TCCTCTCCCCCAGGAAAT  121

seq1  GTCACATCAATCATTAAATCTATCTTTTTTTCTCACTTCTTATCCGTCAG  197
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTCACATCAATCATTAAATCTATC-TTTTTTCTCACTTCTTATCCGTCAG  170

seq1  ACTTGCTGCAAAGCCTTCCGACTTCCTTTAATCTTTGCACCTATCTAC-T  246
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACTTGCTGCAAAGCCTTCCGACTTCCTTTAATCTTTGCACCTATCTACTT  220

seq1  TCTTCAAGGGACTGCTGCTCTCTCTTGTCACCTGTTGTCCTCCAGGTTGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAGGGACTGCTGCTCTCTCTTGTCACCTGTTGTCCTCCAGGTTGC  270

seq1  TCTGGCCAGAGGTCACCTTTCTGTCACAGTCTCAGGGGGGATGCATTTTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCAGAGGTCACCTTTCTGTCACAGTCTCAGGGGGGATGCATTTTA  320

seq1  TATCCTTCAAGGTGGAATTCTCCCTCCTCCTTTGTGATTCTCTGCACAGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTCAAGGTGGAATTCTCCCTCCTCCTTTGTGATTCTCTGCACAGC  370

seq1  TGTACTTTTCTTGCCTTAAAAGAAAATTAAAATCCCATATGTATTAATTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTTTCTTGCCTTAAAAGAAAATTAAAATCCCATATGTATTAATTA  420

seq1  GAGAGAAAGGCTTAGTTTCCTAAAGACTCCTTGGGGCACTTTCAAGCACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAGGCTTAGTTTCCTAAAGACTCCTTGGGGCACTTTCAAGCACT  470

seq1  GCCTTTGATTTCTCTTGGTTGATTTAGTTTAGTTTTGTGTGTGTGTGTGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGATTTCTCTTGGTTGATTTAGTTTAGTTTTGTGTGTGTGTGTGT  520

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAATATTGAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAATATTGAAA  570

seq1  TCTAGGAATGATGTCTTGTATCTTGCTCTGGGGTGTGCATTCACCATTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAATGATGTCTTGTATCTTGCTCTGGGGTGTGCATTCACCATTTT  620

seq1  TTACTGTATTAGACTCAACTGGTCACCAGTGCCACTTTTCTGTGGTTCTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTATTAGACTCAACTGGTCACCAGTGCCACTTTTCTGTGGTTCTC  670

seq1  ATTCCTGTTTGCTTCTGTCCCCTTTGTTCAAAGGCAATATAACTTTGGCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGTTTGCTTCTGTCCCCTTTGTTCAAAGGCAATATAACTTTGGCT  720

seq1  AGGGTACCAGTCTCTGCTTTTAGCATCAGTGTTTCCTCCTCTGTCTAAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTACCAGTCTCTGCTTTTAGCATCAGTGTTTCCTCCTCTGTCTAAAG  770

seq1  GATGGCTCAGACGATTGATATACAATGCACGTTTTTTTCCCCCCAGAAGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCAGACGATTGATATACAATGCACGTTTTTTTCCCCCCAGAAGT  820

seq1  CACCTAGAAGAACTCCCCCCTGAGGAAATAGTCTGAGTGTTTTGAAGAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGAAGAACTCCCCCCTGAGGAAATAGTCTGAGTGTTTTGAAGAAT  870

seq1  TTGAAGAGTTTAAAAGTCTAACTGCTTCTAGAATTCTTGATTGAGTTGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAGTTTAAAAGTCTAACTGCTTCTAGAATTCTTGATTGAGTTGAA  920

seq1  CTCTAGGGACATGAAGTAGTATAGAGGATGAAGCTTTAGATGGGAAGACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGGACATGAAGTAGTATAGAGGATGAAGCTTTAGATGGGAAGACA  970

seq1  AGAAACACGAGTTTTTATCTAGGGCTGGAACTAACTGGCTACATAATCAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACGAGTTTTTATCTAGGGCTGGAACTAACTGGCTACATAATCAC  1020

seq1  TCCAGGATAATATTTCTTTATCTGCAGGATTATGATAGGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGATAATATTTCTTTATCTGCAGGATTATGATAGGAATTC  1064

seq1: chr3_52553886_52555037
seq2: B6Ng01-108N13.g_69_1220

seq1  GAATTCTTATCTATACCTGTATACTTGGGCTAAGAATTCTTATCTGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATCTATACCTGTATACTTGGGCTAAGAATTCTTATCTGCAAT  50

seq1  CACATGTTTGGGCTACGAATGAGGCACATAAGACAACAAGTAGCCTAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTTTGGGCTACGAATGAGGCACATAAGACAACAAGTAGCCTAATC  100

seq1  CTTTGACTGTCATGTTCTTCACACAACACGGAACTGATTGAACCAGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACTGTCATGTTCTTCACACAACACGGAACTGATTGAACCAGCAAG  150

seq1  ATAAAGAAAAGGCTCTGTTGAGAGAACAGGAACGCATCTAGAGAGCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAAAGGCTCTGTTGAGAGAACAGGAACGCATCTAGAGAGCCACA  200

seq1  GAACAACAACGGCAACAAAAAAAGATGCAGAAGACCAAAAGTAAAACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACAACGGCAACAAAAAAAGATGCAGAAGACCAAAAGTAAAACATT  250

seq1  CCTTACGTACTCCCTAAAATTTCAGTCTAGACAATTGGATAGGTAACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACGTACTCCCTAAAATTTCAGTCTAGACAATTGGATAGGTAACCTG  300

seq1  CAGGCATGAGTGTGGATAGAGCAAAAATAACAATTAAAATCAGCAGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATGAGTGTGGATAGAGCAAAAATAACAATTAAAATCAGCAGAAAC  350

seq1  AAAAATATTCTTGTTTTCTGAAAATACAAAATTCAGGAGGCAGGATGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTCTTGTTTTCTGAAAATACAAAATTCAGGAGGCAGGATGGAA  400

seq1  AGATGGCCCAGTAGTAGTGCTTGCTGCATACACGTGAGGACCCGAGCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCCCAGTAGTAGTGCTTGCTGCATACACGTGAGGACCCGAGCTTG  450

seq1  AACTCTTGGAACCTCCTTACAGTCTGGGCACAACAGAGACTGTCTGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTGGAACCTCCTTACAGTCTGGGCACAACAGAGACTGTCTGTGTT  500

seq1  CCCACTGCTGTAGAGGTGGAGAAAAAACCATGTGTTACTGGGCAGCTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGCTGTAGAGGTGGAGAAAAAACCATGTGTTACTGGGCAGCTGGC  550

seq1  TTAGTTGAATCGGTGAGCTCCTGGTTCAGTGAGAGACATTGACTCAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGAATCGGTGAGCTCCTGGTTCAGTGAGAGACATTGACTCAAAAG  600

seq1  GCAAGGTGGAGACCTACTGAGGAAGACATATGATGCTGACTTCTGGCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTGGAGACCTACTGAGGAAGACATATGATGCTGACTTCTGGCATC  650

seq1  CACACGCGTGTTGATGTATGTTCAAGTATGTCACATGCAAAGAGGGAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGCGTGTTGATGTATGTTCAAGTATGTCACATGCAAAGAGGGAGGG  700

seq1  TCTGTGGCTGGTGGTTGTCTAACTGTAACAAACCCCAAGCAGAAAAACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGCTGGTGGTTGTCTAACTGTAACAAACCCCAAGCAGAAAAACCA  750

seq1  GAGGGAGGCAGCCTCCCCTCTTCTCTCTCTTTCCCCACAGAGTCTCTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGCAGCCTCCCCTCTTCTCTCTCTTTCCCCACAGAGTCTCTGCC  800

seq1  TTTCTTCTCTCTGGTTGTTCATCCACAATTCTCGAAACTGACTGTCTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTCTCTGGTTGTTCATCCACAATTCTCGAAACTGACTGTCTACT  850

seq1  TGTTTCTCAGCATTAAAATTGATGAAATGTTTGCCCCAGCTTCAGTGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCAGCATTAAAATTGATGAAATGTTTGCCCCAGCTTCAGTGTTG  900

seq1  CATCATTTATCATCATTTATCACTTCACCACCATTGGCTCTACTCTCTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTATCATCATTTATCACTTCACCACCATTGGCTCTACTCTCTGT  950

seq1  GTATTATGGTTTGATGTCTAAAAGGAGATGCTCTGGTGACCTAGGCCAGA  1000
      ||| |||||||||||||||||||| |||||||||||||||||| ||||||
seq2  GTA-TATGGTTTGATGTCTAAAAGAAGATGCTCTGGTGACCTA-GCCAGA  998

seq1  ATTAGAGTTGAGACGACAACCAATCATCGAAATCACTTGAAGTTCCAAAG  1050
      ||||||||  ||||||||| |||||||||||||||||||||||| |||||
seq2  ATTAGAGTGAAGACGACAATCAATCATCGAAATCACTTGAAGTT-CAAAG  1047

seq1  AAGGCCCA--TGTGAACATCAGGGAGAGACAGTGGAGTTCTAGAGGAGAA  1098
      |||| | |  ||||||||||||||||||||||||||| ||||||||||||
seq2  AAGGTCTATGTGTGAACATCAGGGAGAGACAGTGGAG-TCTAGAGGAGAA  1096

seq1  --GATACATGTATAGAATGGGAAATCATG-TCATCTAAACAACTCATGAA  1145
         |||| ||||||||||||| ||||||| |||||||||| |||||||||
seq2  AGAATACTTGTATAGAATGGG-AATCATGTTCATCTAAAC-ACTCATGAA  1144

seq1  -AACAAAC  1152
       |||||||
seq2  CAACAAAC  1152