BAC Information

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BAC

Clone NameB6Ng01-108O19
Chromosome3 (Build37)
Map Location 57,208,758 - 57,372,649
singlet/doubletdoublet
Overlap geneTm4sf4, Wwtr1
Upstream geneLOC100040139, LOC666585, Tm4sf1, LOC383862
Downstream geneCommd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216, 4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108O19.bB6Ng01-108O19.g
ACCDH915979DH915980
length8961,066
definitionDH915979|Mus musculus domesticus DNA, BAC clone: B6Ng01-108O19, 5' end.DH915980|Mus musculus domesticus DNA, BAC clone: B6Ng01-108O19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,208,758 - 57,209,653)(57,371,572 - 57,372,649)
sequence
gaattctcatcctgccctcccgactgtcaaatgggttttctatttgtgat
gagcagaaagaacccaggtctatccaaatggacttaaatgagattattta
tgaaggtttaaaatcactatcaaaaaaaaggttttaacttggttttgaac
cttaagctctgatgaggcaaagaacttcacccttcaagaatagactagag
aaaaaaaagaaaaagaatgggagggtcaagctgagcacattaggatgggt
ggcctggaacatggaattgtgataggcctggcgagtggggttcattgtta
ctttagaggctagtgctggctgtgctggggagacccaaccagacagaaca
cttggaaaaggtggagtagcatcaggtatctgccagttctctaaagcctt
agatctttaccctctagactctggtgcacggcttattcccaccagagggt
ccttgcgtactctcccttaccccttagaacaggggttcccttctcaccct
cagatctcatcctcagtgtccccaaatatgtagtgaagcaaattcttaca
gacctctccatctacctgcattcattttcttcctatgctgtctggttctt
ttattggctttattatctctattttctttgtttgcctattctccctaatt
cagtcccaagacaacctgcactatgcctgcaagacaacactaatttgctc
agaagtaacacccaacaagtatttgtttaattaattagctaattaattaa
tgagagtatgggacatacaagcaaataaaattaaaagtggaaaggaagtt
ccaataataaagaaaactataaattgaattcagactcaagtaagacataa
ctcaatctgtactggataggaagggatgtgtgtgtgtgtgtgtgtg
gaattccagggctggaaagttgatgttgcatagggcccaggttcaattcc
cagcatccacatggaagctcaccacctcttcaggcatcagacatgcctgt
gtgtcacagacatacatgcaggcaaaacactcatactcataatgtaatat
aaataaacccctccccgccgggcgtggtggtgcacgcctttaatcccagc
actcaggaggcagaggcaggcggatttctgagtacgaggccagcttggtc
tacaaagtgagctccaagatagtcaggcctatacagagaaaccctgtctc
aaaaaaaaaaaaaaaaaaaaacaaaccaaaaaaaccaaaacaacaacaaa
aaaccctccctaaaataagaacaaaacgagatttgaattcaagtattatc
ctaattgataaaataatcacttgtctggttttttggtctctgctctgctg
tggtcgatctttgtaagttagtggcatgtatctgttgttggggtatgtca
tactaaattagccgtaagagcagcaggttatgtttggagagtgtcatttg
tacgtgtggttctggaactctaatacgtagttttgggtgagggtttatct
tttctgtctcttgtggtttttattgtttgtttgccagaactggtacttgg
caaagggaattctgagattaatgcaaggaaattcttcaggttatatttga
ttctatcaagctgagttaggcttggttacagtttatagttagagcctata
ttgagactaaaaggctatttcatggctcgggagacgtggcttagccttca
cgagccctggctgccctcgaagaggacccaggctgagttcccagtacaca
tatggtggctcacaacggtctgtaactctagttctagggggtcctctttc
tggtctccaggggcactgtaaatacgtgcaggtacatgaaataaataata
attaataataaataataaatatgaaaggctttctacttgtttgtattttg
taaatttaggagcactgttatagatttggatggtagacaatgattaatag
gagggatagggtcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_57208758_57209653
seq2: B6Ng01-108O19.b_50_945

seq1  GAATTCTCATCCTGCCCTCCCGACTGTCAAATGGGTTTTCTATTTGTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCCTGCCCTCCCGACTGTCAAATGGGTTTTCTATTTGTGAT  50

seq1  GAGCAGAAAGAACCCAGGTCTATCCAAATGGACTTAAATGAGATTATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAAAGAACCCAGGTCTATCCAAATGGACTTAAATGAGATTATTTA  100

seq1  TGAAGGTTTAAAATCACTATCAAAAAAAAGGTTTTAACTTGGTTTTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTTTAAAATCACTATCAAAAAAAAGGTTTTAACTTGGTTTTGAAC  150

seq1  CTTAAGCTCTGATGAGGCAAAGAACTTCACCCTTCAAGAATAGACTAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCTCTGATGAGGCAAAGAACTTCACCCTTCAAGAATAGACTAGAG  200

seq1  AAAAAAAAGAAAAAGAATGGGAGGGTCAAGCTGAGCACATTAGGATGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAAAAAGAATGGGAGGGTCAAGCTGAGCACATTAGGATGGGT  250

seq1  GGCCTGGAACATGGAATTGTGATAGGCCTGGCGAGTGGGGTTCATTGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGAACATGGAATTGTGATAGGCCTGGCGAGTGGGGTTCATTGTTA  300

seq1  CTTTAGAGGCTAGTGCTGGCTGTGCTGGGGAGACCCAACCAGACAGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAGGCTAGTGCTGGCTGTGCTGGGGAGACCCAACCAGACAGAACA  350

seq1  CTTGGAAAAGGTGGAGTAGCATCAGGTATCTGCCAGTTCTCTAAAGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAAAGGTGGAGTAGCATCAGGTATCTGCCAGTTCTCTAAAGCCTT  400

seq1  AGATCTTTACCCTCTAGACTCTGGTGCACGGCTTATTCCCACCAGAGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTTACCCTCTAGACTCTGGTGCACGGCTTATTCCCACCAGAGGGT  450

seq1  CCTTGCGTACTCTCCCTTACCCCTTAGAACAGGGGTTCCCTTCTCACCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCGTACTCTCCCTTACCCCTTAGAACAGGGGTTCCCTTCTCACCCT  500

seq1  CAGATCTCATCCTCAGTGTCCCCAAATATGTAGTGAAGCAAATTCTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTCATCCTCAGTGTCCCCAAATATGTAGTGAAGCAAATTCTTACA  550

seq1  GACCTCTCCATCTACCTGCATTCATTTTCTTCCTATGCTGTCTGGTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTCCATCTACCTGCATTCATTTTCTTCCTATGCTGTCTGGTTCTT  600

seq1  TTATTGGCTTTATTATCTCTATTTTCTTTGTTTGCCTATTCTCCCTAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGCTTTATTATCTCTATTTTCTTTGTTTGCCTATTCTCCCTAATT  650

seq1  CAGTCCCAAGACAACCTGCACTATGCCTGCAAGACAACACTAATTTGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCAAGACAACCTGCACTATGCCTGCAAGACAACACTAATTTGCTC  700

seq1  AGAAGTAACACCCAACAAGTATTTGTTTAATTAATTAGCTAATTAATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAACACCCAACAAGTATTTGTTTAATTAATTAGCTAATTAATTAA  750

seq1  TGAGAGTATGGGACATACAAGCAAATAAAATTAAAAGTGGAAAGGAAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTATGGGACATACAAGCAAATAAAATTAAAAGTGGAAAGGAAGTT  800

seq1  CCAATAATAAAGAAAACTATAAATTGAATTCAGACTCAAGTAAGACATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAATAAAGAAAACTATAAATTGAATTCAGACTCAAGTAAGACATAA  850

seq1  CTCAATCTGTACTGGATAGGAAGGGATGTGTGTGTGTGTGTGTGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATCTGTACTGGATAGGAAGGGATGTGTGTGTGTGTGTGTGTG  896

seq1: chr3_57371572_57372649
seq2: B6Ng01-108O19.g_67_1132 (reverse)

seq1  TATGAACCCTAATCCCTCCTATTAAATTCATGTCTATACAAATCCCAAAT  50
      |||| ||||| ||||||||||||||  |||| | | ||| |   ||||||
seq2  TATG-ACCCT-ATCCCTCCTATTAA--TCAT-TGTCTACCA--TCCAAAT  43

seq1  CTATAACAGTTGCTCCTAAATTTACAAAATACAAACAAGTAAGATAGCCT  100
      ||||||||| |||||||||||||||||||||||||||||| ||| |||||
seq2  CTATAACAG-TGCTCCTAAATTTACAAAATACAAACAAGT-AGAAAGCCT  91

seq1  TTCATATTTATTTATTTATTTATTTATTTATTTATTTATTTCATGTACCT  150
      |||||||||| ||||||| ||||| |||   |||||||||||||||||||
seq2  TTCATATTTA-TTATTTA-TTATTAATT--ATTATTTATTTCATGTACCT  137

seq1  GCACGTATGTACAGTGCCCCTGGAGACCAG-AAGAGGACCCCCTAGAACT  199
      |||||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  GCACGTATTTACAGTGCCCCTGGAGACCAGAAAGAGGACCCCCTAGAACT  187

seq1  AGAGTTACAGACCGTTGTGAGCCACCATATGTGTACTGGGAACTCAGCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTACAGACCGTTGTGAGCCACCATATGTGTACTGGGAACTCAGCCT  237

seq1  GGGTCCTCTTCGAGGGCAGCCAGGGCTCGTGAAGGCTAAGCCACGTCTCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTCTTCGAGGGCAGCCAGGGCTCGTGAAGGCTAAGCCACGTCTCC  287

seq1  CGAGCCATGAAATAGCCTTTTAGTCTCAATATAGGCTCTAACTATAAACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCCATGAAATAGCCTTTTAGTCTCAATATAGGCTCTAACTATAAACT  337

seq1  GTAACCAAGCCTAACTCAGCTTGATAGAATCAAATATAACCTGAAGAATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCAAGCCTAACTCAGCTTGATAGAATCAAATATAACCTGAAGAATT  387

seq1  TCCTTGCATTAATCTCAGAATTCCCTTTGCCAAGTACCAGTTCTGGCAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCATTAATCTCAGAATTCCCTTTGCCAAGTACCAGTTCTGGCAAA  437

seq1  CAAACAATAAAAACCACAAGAGACAGAAAAGATAAACCCTCACCCAAAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAATAAAAACCACAAGAGACAGAAAAGATAAACCCTCACCCAAAAC  487

seq1  TACGTATTAGAGTTCCAGAACCACACGTACAAATGACACTCTCCAAACAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTATTAGAGTTCCAGAACCACACGTACAAATGACACTCTCCAAACAT  537

seq1  AACCTGCTGCTCTTACGGCTAATTTAGTATGACATACCCCAACAACAGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCTGCTCTTACGGCTAATTTAGTATGACATACCCCAACAACAGAT  587

seq1  ACATGCCACTAACTTACAAAGATCGACCACAGCAGAGCAGAGACCAAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCACTAACTTACAAAGATCGACCACAGCAGAGCAGAGACCAAAAA  637

seq1  ACCAGACAAGTGATTATTTTATCAATTAGGATAATACTTGAATTCAAATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACAAGTGATTATTTTATCAATTAGGATAATACTTGAATTCAAATC  687

seq1  TCGTTTTGTTCTTATTTTAGGGAGGGTTTTTTGTTGTTGTTTTGGTTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTTGTTCTTATTTTAGGGAGGGTTTTTTGTTGTTGTTTTGGTTTTT  737

seq1  TTGGTTTGTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTATA  787

seq1  GGCCTGACTATCTTGGAGCTCACTTTGTAGACCAAGCTGGCCTCGTACTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGACTATCTTGGAGCTCACTTTGTAGACCAAGCTGGCCTCGTACTC  837

seq1  AGAAATCCGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCAC  887

seq1  CACCACGCCCGGCGGGGAGGGGTTTATTTATATTACATTATGAGTATGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACGCCCGGCGGGGAGGGGTTTATTTATATTACATTATGAGTATGAG  937

seq1  TGTTTTGCCTGCATGTATGTCTGTGACACACAGGCATGTCTGATGCCTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGCCTGCATGTATGTCTGTGACACACAGGCATGTCTGATGCCTGA  987

seq1  AGAGGTGGTGAGCTTCCATGTGGATGCTGGGAATTGAACCTGGGCCCTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGGTGAGCTTCCATGTGGATGCTGGGAATTGAACCTGGGCCCTAT  1037

seq1  GCAACATCAACTTTCCAGCCCTGGAATTC  1078
      |||||||||||||||||||||||||||||
seq2  GCAACATCAACTTTCCAGCCCTGGAATTC  1066