BAC Information

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BAC

Clone NameB6Ng01-109D09
Chromosome3 (Build37)
Map Location 59,404,375 - 59,405,565
singlet/doubletsinglet
Overlap genenone
Upstream gene4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330
Downstream geneEG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109D09.bB6Ng01-109D09.g
ACCDH916177DH916178
length1,1521,169
definitionDH916177|Mus musculus domesticus DNA, BAC clone: B6Ng01-109D09, 5' end.DH916178|Mus musculus domesticus DNA, BAC clone: B6Ng01-109D09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatactgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggcaaagatcaaaaactcaggtgacagc
agacgctggcaaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacagccactctggaaatcagtctggtggttactca
gaaaattggacatagtaataccggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaacctgtaagaagaacacatgctccactat
gttcatagcagccttgtttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctattaaaaaaatgaatttatgaaattcctaggcaaa
tggatggacctggagggtatcatcctgagtgaagtaacccaatcacaaag
gaactctcacaatatgtactcactgataagtggatattaacccagaaact
taggatacccaagatataagatacaacttgccaaacgcatgaaattcaag
aagaacgaagaccaaagtgtggacactttaccctttcttagaaatgggaa
caaaacacccatagaaggagttacagagacaaaatttggagctgtgacga
aaggatggaccatctagtgattgccatatgcagggatccatcccataatc
agcttccaaatgctgacaccattgcatacactagcaagatttcgctgaaa
ggacccagatatagctctctcttgtgagactatgccggggcctagcaaca
cagaagtggatgatcacagtcagctattggatgggtcacacggccctaat
ggaggagctagagaattacccaaggagctaaaggaactgcaaccctatag
tggaacaacatatgactacagtaccaggagcttttgtcttagctgcatat
gtatcaaagatgctagtcgcatcactgtaaagagaggcccatgactgcaa
cttatatgccagtacagggaacgccagaagcaaaggaagtgtttgtagca
tc
gaattcctgaggtgatccactgtgtgcgcagagactgcatatccagggag
ttatctgagttgatgatctccagacacgtttgcttccctgtgacaatgga
acccaagttcctatcagcccaaacgaattcataaatagctgcatgtccac
taggaaaccttaaaattgaagctaattctctgacttcctggtcattctgc
tgcttgtgtaggattgtttgacatgtttagtgcttattctgttttttctt
ttttaaaaacttattttgtttatttacattccagtcaatggctcttaaaa
ttgaaatcaatagtcagatttttttttctctacacggatatttttatttt
aatcggtgttcttggataccttttttgttttgttttggatgttttctttc
tttacatttcaaatgcaaagccatttgagtttcctcggttgagaattctg
tataggaagccctgctcctaaactttgtgaaatggaagttaagcatgtct
tgtgaatttagttagtattctgatcctcatctctaaacatattttcagta
atgtttttctgcagcttgagatttttgttcatctcaactatgattagctc
attggtctcttagatttcacaacatgagcttaccagccattcagacacta
agctcttgcaagaacatcaggaaagtttagcttcaaggtttctttgctgt
tgtgggtgaagctataacatcttaagtaacatcaatctgcttgttgcatt
agtaaaaaagaaataatgctggtaatcatgacaaaccagacttgatgaaa
attgcttctctccattaagtattaatcacagattgagagagaatgagaag
acataggttgccatggaaagtgaatgtggtttccctcagatgacagttcg
ttttttgaaagacataaccaaatgggaaatgggagaacctagggactgat
aaagtacccaatctagagtctgttttgctggatccagcttacattccctc
atcctgataaaagctctgaaataaagctgttactttgccttctctggtga
ctttgtcttctgtcttactgggatgcacacccattcctcactggcccaga
acctacttcttctgaaagaaggctcagcgctctaggcaccacgaacctcc
ccttcactttttcttacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_59404375_59405565
seq2: B6Ng01-109D09.g_68_1236 (reverse)

seq1  ATGTAAAAGGAAAAAAAGTGAAGGGGGAGGGGTCTGGTGGTTGCCTAGGA  50
      |||||     | |||||||||| |||||||    | |||| |||||   |
seq2  ATGTA-----AGAAAAAGTGAA-GGGGAGG---TTCGTGG-TGCCT---A  37

seq1  GACTGCTGAGC--TCATTCTATGAGGAAGTAGGTTCTAGTGCCAGTGAAG  98
      ||  |||||||  || |||   || |||||||||||| | ||||||| ||
seq2  GAGCGCTGAGCCTTCTTTC--AGAAGAAGTAGGTTCT-GGGCCAGTG-AG  83

seq1  GAATGGGTGTGCATCCCAGGTAAGACAGAAGACAAAGTCA-CAGAGAAGG  147
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  GAATGGGTGTGCATCCCA-GTAAGACAGAAGACAAAGTCACCAGAGAAGG  132

seq1  CAAAGTAACAGCTTTATTTTCAGGAGCTTTTATCAGGATTGAGGGATTGT  197
      |||||||||||||||| ||||| ||||||||||||||| ||||||| |||
seq2  CAAAGTAACAGCTTTA-TTTCA-GAGCTTTTATCAGGA-TGAGGGAATGT  179

seq1  AAGCTGGATCCAGCAAAACAGACTCTAGATTGGGTACTTTATCAGGTCCC  247
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGCTGGATCCAGCAAAACAGACTCTAGATTGGGTACTTTATCA-GTCCC  228

seq1  TAGGTTCTCCCATTTCCCATTTTGGTTATGTCTTTTCAAAAAACGAACTG  297
      ||||||||||||||||||| |||||||||||| |||||||||||||||||
seq2  TAGGTTCTCCCATTTCCCA-TTTGGTTATGTC-TTTCAAAAAACGAACTG  276

seq1  TCATCTGAGGGAAACCACATTCACTTTCCATGGCAACCTATGTTCTTCTC  347
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCATCTGAGGGAAACCACATTCACTTTCCATGGCAACCTATG-TCTTCTC  325

seq1  ATTCTCTCTCAATCTGTGATTAATACTTAATGGAGAGAAGCAATTTTCAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTCTCAATCTGTGATTAATACTTAATGGAGAGAAGCAATTTTCAT  375

seq1  CAAGTCTGGTTTGTCATGATTACCAGCATTATTTCTTTTTTACTAATGCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTGGTTTGTCATGATTACCAGCATTATTTCTTTTTTACTAATGCA  425

seq1  ACAAGCAGATTGATGTTACTTAAGATGTTATAGCTTCACCCACAACAGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAGATTGATGTTACTTAAGATGTTATAGCTTCACCCACAACAGCA  475

seq1  AAGAAACCTTGAAGCTAAACTTTCCTGATGTTCTTGCAAGAGCTTAGTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACCTTGAAGCTAAACTTTCCTGATGTTCTTGCAAGAGCTTAGTGT  525

seq1  CTGAATGGCTGGTAAGCTCATGTTGTGAAATCTAAGAGACCAATGAGCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGGCTGGTAAGCTCATGTTGTGAAATCTAAGAGACCAATGAGCTA  575

seq1  ATCATAGTTGAGATGAACAAAAATCTCAAGCTGCAGAAAAACATTACTGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGTTGAGATGAACAAAAATCTCAAGCTGCAGAAAAACATTACTGA  625

seq1  AAATATGTTTAGAGATGAGGATCAGAATACTAACTAAATTCACAAGACAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTTTAGAGATGAGGATCAGAATACTAACTAAATTCACAAGACAT  675

seq1  GCTTAACTTCCATTTCACAAAGTTTAGGAGCAGGGCTTCCTATACAGAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAACTTCCATTTCACAAAGTTTAGGAGCAGGGCTTCCTATACAGAAT  725

seq1  TCTCAACCGAGGAAACTCAAATGGCTTTGCATTTGAAATGTAAAGAAAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACCGAGGAAACTCAAATGGCTTTGCATTTGAAATGTAAAGAAAGA  775

seq1  AAACATCCAAAACAAAACAAAAAAGGTATCCAAGAACACCGATTAAAATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCCAAAACAAAACAAAAAAGGTATCCAAGAACACCGATTAAAATA  825

seq1  AAAATATCCGTGTAGAGAAAAAAAAATCTGACTATTGATTTCAATTTTAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCCGTGTAGAGAAAAAAAAATCTGACTATTGATTTCAATTTTAA  875

seq1  GAGCCATTGACTGGAATGTAAATAAACAAAATAAGTTTTTAAAAAAGAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATTGACTGGAATGTAAATAAACAAAATAAGTTTTTAAAAAAGAAA  925

seq1  AAACAGAATAAGCACTAAACATGTCAAACAATCCTACACAAGCAGCAGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAATAAGCACTAAACATGTCAAACAATCCTACACAAGCAGCAGAA  975

seq1  TGACCAGGAAGTCAGAGAATTAGCTTCAATTTTAAGGTTTCCTAGTGGAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGGAAGTCAGAGAATTAGCTTCAATTTTAAGGTTTCCTAGTGGAC  1025

seq1  ATGCAGCTATTTATGAATTCGTTTGGGCTGATAGGAACTTGGGTTCCATT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCTATTTATGAATTCGTTTGGGCTGATAGGAACTTGGGTTCCATT  1075

seq1  GTCACAGGGAAGCAAACGTGTCTGGAGATCATCAACTCAGATAACTCCCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGGGAAGCAAACGTGTCTGGAGATCATCAACTCAGATAACTCCCT  1125

seq1  GGATATGCAGTCTCTGCGCACACAGTGGATCACCTCAGGAATTC  1191
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGCAGTCTCTGCGCACACAGTGGATCACCTCAGGAATTC  1169