BAC Information

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BAC

Clone NameB6Ng01-109D23
Chromosome3 (Build37)11 (Build37)
Map Location 41,059,188 - 41,059,73773,592,488 - 73,593,580
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109D23.bB6Ng01-109D23.g
ACCDH916205DH916206
length9891,085
definitionDH916205|Mus musculus domesticus DNA, BAC clone: B6Ng01-109D23, 5' end.DH916206|Mus musculus domesticus DNA, BAC clone: B6Ng01-109D23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,188 - 41,059,737)(73,592,488 - 73,593,580)
sequence
gaattctttgtttagctctgagccacatcttttaagggggttatttgatt
ttctggagtccaccctcttgagttctttatatatattggatattagtccc
atatctgatttaagataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgccttgcagaagctttgcagtttca
tgaggtcccatttgtcaatcctcaatcttacagcacaagccattgctgtt
ctattcaggtatttttcccctgtgcccatgtcttcctcaacttttcccca
ctttctactctataagtttcagtgtctctggttttatgtggagttccttg
atccacttagatttgaccttagtacaaggagataggaatggatcgattca
cattcttctacatgataacagccagttgtgccagcaccatttgttgaaaa
tgctgtctttcttccactggatggttttagctcccttgtctaagatcaag
tgaccataggtgtgtgggttcatttctgggtcttcaattctattccattg
gtctacttgtctgtcagtataacagtaccatgcagtttttatcacaattg
ctctgtagtacagctttaggtcaggcatggtgattccaccagaggttctt
ttatccttgagaagagtttttgccatcctaggttttttgttattacagat
gaatttgcagattgctctttctaattcgttgaaaaattgagttgaaattt
tgatggggattgcattgaatctgtagattgcttttggcacgatagccatt
tttacaatgttgatcctgccaatccatgagcatgggagatctttccatct
cctgagatcttctttaatttctttcttcagagacttgaagtttttaatca
tacagatctttcacttccttagttagagtcacgccagatattttatatta
tttgtgactattgagaaggtgttgtttccctaattgttc
gaattccaggtgagctgaatgaataataactgctagaactatttctttgg
acagtcttatctgctattcaggtaaaaactgtgagatttacagctgaaga
agtaaagtccattgggtcagcaacagcaactatcacaagtgatctttggt
ttgtagtcttttcacataagcctacataaaccatgggccccactcagtca
cagaatacaaataattctgagacacttggtacacaatttcccttatatta
ctctaagtttctgtttttctattaacttctcacattatgaaaggtaagag
ttacttcactctgatataatgttaataaataaattaaatgttaaaaacac
agtaaaacaccttcatagaaataccttgagctgtaatttgaccaaaatgg
attttaagccctataccagtttctataaaaactgtcatgttaggtatgga
tagttgaatatgaactcaagggagggattaaaattaattgacacttatga
agtgttcattgtatatattttttctccatcattatcagtggaatcatatg
tatagtgaaatcatatgaagcataaaaatattagtcattattagtattat
taaaaagagcattgcattttgtacacccaaatactttccataaatacaca
atcacatcttaaagctaatcacagactatcaaaatttaatgttgaggggg
tacttttggtgacttcatattttgaggagaatgaagaagagtaattattt
gggatttaatataaatttcttccttacattttaggctatgtctcaggcta
cagaatagccaggaaatcttcatgaatactgggttatgaacaggcatgac
cttttcctgcaagaagtttacagtctgtcaacaatagctggtactggatg
ataagctatgaaatgagtacagatggtatgagacattgtagcaggtctac
tatatagggatacaaggaattatactcagtataactcaataatcattgtc
atattgggggacataaaacggacaagatacaccatgagaaagatgtgata
ggtaggaaatattaggttagaaatgattagagtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059188_41059737
seq2: B6Ng01-109D23.b_49_600 (reverse)

seq1  GACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGG  50
      |||||||||||||||||||||||| |||||| ||| ||||||||||||||
seq2  GACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGG  50

seq1  TCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACA  100
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  TCACTTGATCTTAGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACA  100

seq1  GCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGA  150
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCATTTTCAACAAATGGTGCTGGCACAACTGGCTGTTATCATGTAGAAGA  150

seq1  ATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTG  200
      ||| |||| |||||| ||||||||||||||||||||||||||||||||||
seq2  ATGTGAATCGATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTG  200

seq1  GATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGA  250
      ||||||||||| |||||||||||||||||||||||||||||||||| |||
seq2  GATCAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGTAGA  250

seq1  AAGTGGGGAAAAGCCTT---GAAGATATGGTCACAGGGGAAAAATTCCTG  297
      |||||||||||||  ||   ||||| |||| |||||||||||||| ||||
seq2  AAGTGGGGAAAAG--TTGAGGAAGACATGGGCACAGGGGAAAAATACCTG  298

seq1  CATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGA  347
       |||||||||||||||||||||||||||||||||| || |||||||||||
seq2  AATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGGATTGACAAATGGGA  348

seq1  CCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGA  398

seq1  CAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCA  446
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  CAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCTTAAATCA  448

seq1  GATAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTC  496
      |||| |||||||||||||||||||||| |||||||||||| |||||| ||
seq2  GATATGGGACTAATATCCAATATATATAAAGAACTCAAGAGGGTGGACTC  498

seq1  CAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAG  546
      ||||||||||||||||||| |||||| ||| |||||||||||||||||||
seq2  CAGAAAATCAAATAACCCCCTTAAAAGATGTGGCTCAGAGCTAAACAAAG  548

seq1  AATT  550
      ||||
seq2  AATT  552

seq1: chr11_73592488_73593580
seq2: B6Ng01-109D23.g_67_1150 (reverse)

seq1  GACTCT-ATCATTTCTAACTTAATATTCTCCTTACCTATCACATCTTCTC  49
      |||||| |||||||||||| ||||||| ||| |||||||||||||||   
seq2  GACTCTAATCATTTCTAACCTAATATT-TCC-TACCTATCACATCTT---  45

seq1  CTCT-ATGGTGTATCTTGTTCGTTTTATGGTTCCACAATATGACATTGAA  98
       ||| |||||||||||||| |||||||| || || |||||||||| || |
seq2  -TCTCATGGTGTATCTTGTCCGTTTTAT-GTCCCCCAATATGACAATG-A  92

seq1  TTATTGAGTTATACTGAGTTATAATTTCTTTGTATCCCTATATAGTTAGA  148
      |||||||||||||||||| ||||| ||| |||||||||||||||| ||||
seq2  TTATTGAGTTATACTGAG-TATAA-TTCCTTGTATCCCTATATAG-TAGA  139

seq1  CCTGCTACAATGGTCTCATACCATCTTGTACTCATTTCATAGCTTATCAT  198
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  CCTGCTACAAT-GTCTCATACCATC-TGTACTCATTTCATAGCTTATCAT  187

seq1  TCAGTACCAGCTATTGTTGACAGACTGTAAACTTCTTGCAGG-AAAGGTC  247
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCAGTACCAGCTATTGTTGACAGACTGTAAACTTCTTGCAGGAAAAGGTC  237

seq1  ATGCCTGTTCATAACCCAGTATTCATGAAGATTTCCTGGCTATTCTGTAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGTTCATAACCCAGTATTCATGAAGATTTCCTGGCTATTCTGTAG  287

seq1  CCTGAGACATAGCCTAAAATGTAAGGAAGAAATTTATATTAAAT-CCAAA  346
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCTGAGACATAGCCTAAAATGTAAGGAAGAAATTTATATTAAATCCCAAA  337

seq1  TAATTACTCTTCTTCATTCTCCTCAAAATATGAAGTCACCAAAAGTACCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACTCTTCTTCATTCTCCTCAAAATATGAAGTCACCAAAAGTACCC  387

seq1  CCTCAACATTAAATTTTGATAGTCTGTGATTAGCTTTAAGATGTGATTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACATTAAATTTTGATAGTCTGTGATTAGCTTTAAGATGTGATTGT  437

seq1  GTATTTATGGAAAGTATTTGGGTGTACAAAATGCAATGCTCTTTTTAATA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATGGAAAGTATTTGGGTGTACAAAATGCAATGCTCTTTTTAATA  487

seq1  ATACTAATAATGACTAATATTTTTATGCTTCATATGATTTCACTATACAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAATAATGACTAATATTTTTATGCTTCATATGATTTCACTATACAT  537

seq1  ATGATTCCACTGATAATGATGGAGAAAAAATATATACAATGAACACTTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCCACTGATAATGATGGAGAAAAAATATATACAATGAACACTTCA  587

seq1  TAAGTGTCAATTAATTTTAATCCCTCCCTTGAGTTCATATTCAACTATCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTCAATTAATTTTAATCCCTCCCTTGAGTTCATATTCAACTATCC  637

seq1  ATACCTAACATGACAGTTTTTATAGAAACTGGTATAGGGCTTAAAATCCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTAACATGACAGTTTTTATAGAAACTGGTATAGGGCTTAAAATCCA  687

seq1  TTTTGGTCAAATTACAGCTCAAGGTATTTCTATGAAGGTGTTTTACTGTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTCAAATTACAGCTCAAGGTATTTCTATGAAGGTGTTTTACTGTG  737

seq1  TTTTTAACATTTAATTTATTTATTAACATTATATCAGAGTGAAGTAACTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACATTTAATTTATTTATTAACATTATATCAGAGTGAAGTAACTC  787

seq1  TTACCTTTCATAATGTGAGAAGTTAATAGAAAAACAGAAACTTAGAGTAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTTCATAATGTGAGAAGTTAATAGAAAAACAGAAACTTAGAGTAA  837

seq1  TATAAGGGAAATTGTGTACCAAGTGTCTCAGAATTATTTGTATTCTGTGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGGAAATTGTGTACCAAGTGTCTCAGAATTATTTGTATTCTGTGA  887

seq1  CTGAGTGGGGCCCATGGTTTATGTAGGCTTATGTGAAAAGACTACAAACC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGGGGCCCATGGTTTATGTAGGCTTATGTGAAAAGACTACAAACC  937

seq1  AAAGATCACTTGTGATAGTTGCTGTTGCTGACCCAATGGACTTTACTTCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCACTTGTGATAGTTGCTGTTGCTGACCCAATGGACTTTACTTCT  987

seq1  TCAGCTGTAAATCTCACAGTTTTTACCTGAATAGCAGATAAGACTGTCCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGTAAATCTCACAGTTTTTACCTGAATAGCAGATAAGACTGTCCA  1037

seq1  AAGAAATAGTTCTAGCAGTTATTATTCATTCAGCTCACCTGGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAGTTCTAGCAGTTATTATTCATTCAGCTCACCTGGAATTC  1084